Wall clock time and date at job start Tue Mar 31 2020 17:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38000 * 120.81961 * 2 1 4 4 C 1.39123 * 119.26424 * 180.02562 * 3 2 1 5 5 O 1.35500 * 119.52661 * 180.02562 * 4 3 2 6 6 N 1.32440 * 120.95044 * 0.27012 * 4 3 2 7 7 C 1.31639 * 121.79418 * 359.44369 * 6 4 3 8 8 C 1.39563 * 120.62865 * 0.55587 * 7 6 4 9 9 C 1.47608 * 120.49746 * 179.75079 * 8 7 6 10 10 O 1.21588 * 119.99998 * 141.23036 * 9 8 7 11 11 N 1.34782 * 120.00308 * 321.23383 * 9 8 7 12 12 C 1.47162 * 135.99755 * 4.48499 * 11 9 8 13 13 C 1.52647 * 87.97100 * 206.72048 * 12 11 9 14 14 C 1.47158 * 136.00388 * 184.85688 * 11 9 8 15 15 C 1.52557 * 113.89190 * 88.17360 * 13 12 11 16 16 C 1.53357 * 109.12558 * 190.30436 * 15 13 12 17 17 N 1.46884 * 108.75177 * 307.75793 * 16 15 13 18 18 C 1.36933 * 120.46024 * 235.60180 * 17 16 15 19 19 H 1.08005 * 119.99759 * 153.41873 * 18 17 16 20 20 C 1.38809 * 120.00624 * 333.41989 * 18 17 16 21 21 N 1.31618 * 120.00529 * 154.60614 * 20 18 17 22 22 Si 1.86807 * 119.99803 * 334.60524 * 20 18 17 23 23 H 1.48491 * 109.47022 * 94.96493 * 22 20 18 24 24 H 1.48493 * 109.47241 * 214.97115 * 22 20 18 25 25 H 1.48510 * 109.46920 * 334.96889 * 22 20 18 26 26 C 1.46896 * 119.07394 * 55.62927 * 17 16 15 27 27 C 1.52554 * 114.26200 * 220.76614 * 13 12 11 28 28 H 1.09001 * 109.47317 * 95.64907 * 1 2 3 29 29 H 1.09002 * 109.46849 * 215.64668 * 1 2 3 30 30 H 1.09000 * 109.46786 * 335.64918 * 1 2 3 31 31 H 1.08001 * 120.36575 * 0.02562 * 3 2 1 32 32 H 0.96700 * 114.00154 * 89.99466 * 5 4 3 33 33 H 1.08001 * 119.68351 * 180.30655 * 7 6 4 34 34 H 1.08997 * 113.49351 * 321.41961 * 12 11 9 35 35 H 1.09000 * 113.48969 * 91.92362 * 12 11 9 36 36 H 1.08997 * 113.49202 * 268.08611 * 14 11 9 37 37 H 1.09007 * 113.48946 * 38.52613 * 14 11 9 38 38 H 1.08994 * 109.53034 * 310.20342 * 15 13 12 39 39 H 1.08997 * 109.52456 * 70.41265 * 15 13 12 40 40 H 1.09003 * 109.58613 * 187.97764 * 16 15 13 41 41 H 1.08993 * 109.58886 * 67.54242 * 16 15 13 42 42 H 0.96999 * 120.00155 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.59033 * 184.58885 * 26 17 16 44 44 H 1.08994 * 109.59275 * 64.13887 * 26 17 16 45 45 H 1.09005 * 109.52515 * 289.75562 * 27 13 12 46 46 H 1.08993 * 109.52963 * 49.88901 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1474 -0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2548 -0.0065 -0.0064 7 6 3.6205 -1.1600 -0.0011 8 6 2.2256 -1.2043 -0.0006 9 6 1.5172 -2.4993 -0.0001 10 8 0.5055 -2.6386 0.6596 11 7 1.9920 -3.5275 -0.7310 12 6 3.1809 -3.7753 -1.5621 13 6 2.3531 -4.7887 -2.3483 14 6 1.5458 -4.8922 -1.0533 15 6 1.5809 -4.1827 -3.5161 16 6 0.5987 -5.2253 -4.0640 17 7 1.3342 -6.4653 -4.3447 18 6 1.2940 -7.0290 -5.5920 19 1 2.1137 -7.6439 -5.9333 20 6 0.1998 -6.8104 -6.4177 21 7 0.3340 -6.8945 -7.7243 22 14 -1.4633 -6.3967 -5.6743 23 1 -1.6388 -4.9225 -5.6437 24 1 -2.5387 -7.0063 -6.4971 25 1 -1.5343 -6.9325 -4.2911 26 6 2.1130 -7.0925 -3.2686 27 6 3.1063 -6.0636 -2.7152 28 1 -0.3634 -0.1012 -1.0227 29 1 -0.3633 -0.8351 0.5989 30 1 -0.3633 0.9363 0.4237 31 1 1.6935 2.1314 0.0004 32 1 4.5076 2.6441 0.8835 33 1 4.1849 -2.0808 -0.0011 34 1 3.4847 -2.9122 -2.1543 35 1 4.0091 -4.2234 -1.0131 36 1 1.9245 -5.6472 -0.3643 37 1 0.4707 -4.9709 -1.2154 38 1 1.0295 -3.3073 -3.1733 39 1 2.2781 -3.8909 -4.3015 40 1 0.1456 -4.8530 -4.9829 41 1 -0.1776 -5.4202 -3.3242 42 1 -0.4307 -6.7420 -8.3012 43 1 2.6573 -7.9503 -3.6636 44 1 1.4421 -7.4172 -2.4734 45 1 3.8571 -5.8379 -3.4726 46 1 3.5939 -6.4669 -1.8278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050659488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:44 Heat of formation + Delta-G solvation = 3.723549 kcal Electronic energy + Delta-G solvation = -28920.932745 eV Core-core repulsion = 25005.096528 eV Total energy + Delta-G solvation = -3915.836217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34206 -41.46837 -39.68733 -38.06350 -37.76086 -34.96199 -34.39105 -32.75593 -32.01464 -31.55086 -29.33336 -28.44862 -27.19477 -25.92823 -24.99594 -24.45974 -23.33491 -22.71322 -20.90031 -19.67852 -19.48674 -18.72314 -18.27301 -18.03701 -17.32144 -17.19115 -16.87510 -16.59624 -15.93438 -15.67179 -15.45608 -15.25034 -15.01365 -14.93230 -14.76609 -14.35728 -14.19334 -13.95247 -13.78869 -13.64021 -13.57808 -13.38225 -13.27543 -13.15644 -12.90034 -12.73493 -12.54625 -12.23068 -12.11924 -11.66602 -11.55367 -11.36694 -11.23938 -10.99968 -10.68778 -10.63547 -10.51173 -10.12087 -9.75481 -8.90553 -8.17653 -5.42578 -0.51755 0.01796 1.27912 1.39447 1.47385 1.52881 1.70203 2.37718 2.41277 2.62781 3.02756 3.18758 3.28940 3.42418 3.49424 3.53873 3.75018 3.87759 3.93029 4.11047 4.14024 4.31321 4.36940 4.39268 4.48096 4.52321 4.56614 4.61403 4.63565 4.64872 4.70332 4.76122 4.80617 4.90809 5.00137 5.01851 5.04103 5.20126 5.21391 5.25010 5.30659 5.35664 5.57113 5.89915 6.14882 6.49742 6.60953 6.74111 6.95218 6.95357 7.66645 8.07012 9.02242 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.003089 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.804989 B = 9062.805405 C = 9329.233874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 C -0.189 4.189 4 C 0.332 3.668 5 O -0.487 6.487 6 N -0.529 5.529 7 C 0.169 3.831 8 C -0.209 4.209 9 C 0.592 3.408 10 O -0.571 6.571 11 N -0.636 5.636 12 C 0.110 3.890 13 C -0.080 4.080 14 C 0.113 3.887 15 C -0.097 4.097 16 C 0.129 3.871 17 N -0.617 5.617 18 C -0.242 4.242 19 H 0.059 0.941 20 C -0.030 4.030 21 N -0.951 5.951 22 Si 0.929 3.071 23 H -0.283 1.283 24 H -0.311 1.311 25 H -0.264 1.264 26 C 0.139 3.861 27 C -0.103 4.103 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.174 0.826 32 H 0.426 0.574 33 H 0.183 0.817 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.024 0.976 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.092 15.493 21.001 27.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 C -0.209 4.209 4 C 0.154 3.846 5 O -0.298 6.298 6 N -0.249 5.249 7 C 0.011 3.989 8 C -0.214 4.214 9 C 0.383 3.617 10 O -0.452 6.452 11 N -0.369 5.369 12 C -0.011 4.011 13 C -0.081 4.081 14 C -0.009 4.009 15 C -0.136 4.136 16 C 0.004 3.996 17 N -0.341 5.341 18 C -0.372 4.372 19 H 0.076 0.924 20 C -0.225 4.225 21 N -0.597 5.597 22 Si 0.759 3.241 23 H -0.210 1.210 24 H -0.240 1.240 25 H -0.189 1.189 26 C 0.015 3.985 27 C -0.142 4.142 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.191 0.809 32 H 0.289 0.711 33 H 0.199 0.801 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.085 0.915 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.300 15.634 20.762 27.283 hybrid contribution -2.057 0.052 -0.026 2.058 sum 6.243 15.686 20.736 26.739 Atomic orbital electron populations 1.21167 0.88801 1.05509 1.03761 1.20486 0.97879 0.90942 0.89521 1.22169 0.93469 0.99976 1.05335 1.19558 0.87599 0.85434 0.92000 1.84676 1.75690 1.33254 1.36195 1.67245 1.42433 0.98773 1.16436 1.22946 0.89663 0.95831 0.90477 1.20742 0.95851 0.93580 1.11204 1.17639 0.83626 0.82809 0.77648 1.90717 1.27335 1.83474 1.43681 1.49597 1.25856 1.13560 1.47901 1.23395 0.89267 0.98140 0.90323 1.21508 0.96715 0.96966 0.92898 1.23211 1.00207 0.82887 0.94602 1.21531 0.98284 0.96928 0.96902 1.21210 0.93860 0.87013 0.97495 1.44492 1.57434 1.23716 1.08507 1.18903 1.00855 1.27393 0.90048 0.92364 1.25768 1.00684 1.00813 0.95248 1.70006 1.31145 1.54909 1.03625 0.86129 0.82231 0.77193 0.78573 1.21025 1.23982 1.18892 1.21185 0.92950 0.94951 0.89401 1.21751 0.97305 0.93181 1.01977 0.90372 0.89884 0.88213 0.80904 0.71114 0.80058 0.89752 0.85207 0.86769 0.92520 0.92351 0.91693 0.93965 0.95797 0.93097 0.92149 0.94636 0.91462 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.55 71.24 0.68 -1.89 16 2 C 0.02 0.40 5.94 -19.43 -0.12 0.28 16 3 C -0.19 -3.02 9.70 22.43 0.22 -2.80 16 4 C 0.33 5.94 7.74 84.81 0.66 6.60 16 5 O -0.49 -6.74 13.55 -88.01 -1.19 -7.94 16 6 N -0.53 -10.92 10.37 -307.80 -3.19 -14.12 16 7 C 0.17 3.24 9.97 85.04 0.85 4.08 16 8 C -0.21 -4.60 5.74 -20.00 -0.11 -4.72 16 9 C 0.59 15.53 7.40 86.72 0.64 16.17 16 10 O -0.57 -18.73 15.17 -3.99 -0.06 -18.79 16 11 N -0.64 -14.49 3.45 -862.40 -2.97 -17.46 16 12 C 0.11 1.90 5.71 83.21 0.48 2.38 16 13 C -0.08 -1.90 0.83 -52.61 -0.04 -1.94 16 14 C 0.11 2.63 7.57 83.31 0.63 3.26 16 15 C -0.10 -3.10 5.26 30.57 0.16 -2.94 16 16 C 0.13 5.35 4.16 86.43 0.36 5.71 16 17 N -0.62 -27.34 2.73 -698.66 -1.91 -29.24 16 18 C -0.24 -13.28 9.97 84.03 0.84 -12.45 16 19 H 0.06 3.45 8.05 -2.91 -0.02 3.42 16 20 C -0.03 -1.74 5.13 84.86 0.44 -1.30 16 21 N -0.95 -59.33 13.97 21.65 0.30 -59.03 16 22 Si 0.93 46.73 24.52 68.60 1.68 48.41 16 23 H -0.28 -13.76 6.68 99.48 0.66 -13.09 16 24 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 25 H -0.26 -12.81 6.91 99.48 0.69 -12.12 16 26 C 0.14 4.64 6.42 86.42 0.56 5.20 16 27 C -0.10 -2.41 5.31 30.56 0.16 -2.25 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.02 5.55 -2.39 -0.01 2.01 16 30 H 0.10 1.28 8.07 -2.39 -0.02 1.26 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.43 1.27 9.06 -74.06 -0.67 0.60 16 33 H 0.18 2.59 6.75 -2.91 -0.02 2.57 16 34 H 0.08 1.44 7.84 -2.39 -0.02 1.42 16 35 H 0.13 1.33 8.09 -2.39 -0.02 1.31 16 36 H 0.11 2.08 8.06 -2.39 -0.02 2.06 16 37 H 0.06 1.61 7.53 -2.38 -0.02 1.60 16 38 H 0.06 1.80 7.95 -2.39 -0.02 1.78 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.04 2.00 4.57 -2.39 -0.01 1.99 16 41 H 0.02 0.99 6.88 -2.39 -0.02 0.97 16 42 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 43 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.11 1.62 8.09 -2.39 -0.02 1.60 16 Total: -1.00 -77.04 364.22 -0.67 -77.71 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.28 Total: 7.06 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.39 Total: 13.39 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -7.77 Total: -119.84 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -1.25 Total: -26.73 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.68 Total: 48.41 kcal Total: -77.04 -0.67 -77.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050659488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.435 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds