Wall clock time and date at job start Tue Mar 31 2020 16:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.40487 * 2 1 4 4 C 1.38338 * 119.45643 * 180.02562 * 3 2 1 5 5 C 1.39986 * 118.34806 * 0.02562 * 4 3 2 6 6 C 1.47527 * 120.59306 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99866 * 186.66160 * 6 5 4 8 8 N 1.34769 * 120.00245 * 6.66747 * 6 5 4 9 9 C 1.47671 * 134.46018 * 184.80104 * 8 6 5 10 10 C 1.53508 * 85.98117 * 204.33574 * 9 8 6 11 11 C 1.47672 * 134.45551 * 4.82834 * 8 6 5 12 12 C 1.52668 * 113.57835 * 91.01325 * 10 9 8 13 13 C 1.53335 * 109.10950 * 73.81364 * 12 10 9 14 14 N 1.46880 * 108.76085 * 52.40822 * 13 12 10 15 15 C 1.36937 * 120.46517 * 124.47339 * 14 13 12 16 16 H 1.07998 * 119.99862 * 324.45820 * 15 14 13 17 17 C 1.38816 * 120.00280 * 144.73520 * 15 14 13 18 18 N 1.31621 * 119.99548 * 346.60368 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 166.60127 * 17 15 14 20 20 H 1.48500 * 109.47016 * 90.00037 * 19 17 15 21 21 H 1.48497 * 109.46899 * 210.00017 * 19 17 15 22 22 H 1.48502 * 109.47008 * 330.00166 * 19 17 15 23 23 C 1.46884 * 119.06882 * 304.74250 * 14 13 12 24 24 C 1.52676 * 113.56180 * 222.23713 * 10 9 8 25 25 C 1.40280 * 118.81128 * 0.27103 * 5 4 3 26 26 O 1.35423 * 119.80214 * 179.72305 * 25 5 4 27 27 N 1.31879 * 119.40774 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47276 * 89.99964 * 1 2 3 29 29 H 1.09007 * 109.46853 * 209.99773 * 1 2 3 30 30 H 1.08996 * 109.47178 * 329.99717 * 1 2 3 31 31 H 1.07999 * 120.27025 * 0.02648 * 3 2 1 32 32 H 1.07994 * 120.82473 * 180.02562 * 4 3 2 33 33 H 1.09002 * 113.78917 * 90.06750 * 9 8 6 34 34 H 1.08997 * 113.89601 * 318.61537 * 9 8 6 35 35 H 1.08993 * 113.79271 * 41.39277 * 11 8 6 36 36 H 1.09001 * 113.78705 * 269.92649 * 11 8 6 37 37 H 1.09001 * 109.52660 * 313.92979 * 12 10 9 38 38 H 1.08988 * 109.59405 * 193.74266 * 12 10 9 39 39 H 1.09003 * 109.59305 * 292.62535 * 13 12 10 40 40 H 1.08995 * 109.58846 * 172.19040 * 13 12 10 41 41 H 0.97003 * 119.99564 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.58877 * 175.04590 * 23 14 13 43 43 H 1.08997 * 109.59116 * 295.47529 * 23 14 13 44 44 H 1.08996 * 109.53220 * 46.07240 * 24 10 9 45 45 H 1.09003 * 109.52968 * 166.21955 * 24 10 9 46 46 H 0.96704 * 113.99301 * 90.00528 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0248 -0.0016 6 6 5.7097 -0.0813 -0.0028 7 8 6.2771 -1.1497 -0.1259 8 7 6.4276 1.0513 0.1327 9 6 7.8677 1.3747 0.0871 10 6 7.5112 2.5928 0.9506 11 6 6.0892 2.4661 0.3867 12 6 7.6003 2.3249 2.4509 13 6 9.0759 2.2525 2.8612 14 7 9.7604 3.4587 2.3776 15 6 10.4474 4.2630 3.2473 16 1 10.0804 4.4089 4.2525 17 6 11.6123 4.8955 2.8351 18 7 12.2009 4.5270 1.7170 19 14 12.3445 6.2695 3.8672 20 1 13.2986 5.6958 4.8500 21 1 13.0590 7.2254 2.9836 22 1 11.2579 6.9796 4.5887 23 6 9.6926 3.7934 0.9490 24 6 8.2262 3.8728 0.5250 25 6 3.4759 -1.2041 -0.0079 26 8 4.0993 -2.4062 -0.0148 27 7 2.1546 -1.1489 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6411 2.1376 0.0004 32 1 4.1223 2.1345 -0.0001 33 1 8.2293 1.6320 -0.9085 34 1 8.5001 0.6461 0.5943 35 1 5.3066 2.6039 1.1325 36 1 5.9224 3.0478 -0.5199 37 1 7.1111 1.3785 2.6817 38 1 7.1096 3.1311 2.9959 39 1 9.5356 1.3690 2.4181 40 1 9.1511 2.2003 3.9473 41 1 13.0148 4.9692 1.4288 42 1 10.1741 4.7560 0.7759 43 1 10.1966 3.0208 0.3683 44 1 8.1638 3.9824 -0.5576 45 1 7.7553 4.7303 1.0058 46 1 4.2805 -2.7603 0.8667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050676849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:35 Heat of formation + Delta-G solvation = 25.806861 kcal Electronic energy + Delta-G solvation = -28675.302797 eV Core-core repulsion = 24760.424184 eV Total energy + Delta-G solvation = -3914.878613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26715 -40.32075 -38.17778 -37.30386 -35.85482 -33.57941 -32.38199 -31.91272 -30.64518 -29.88106 -28.46183 -26.92829 -26.39189 -24.27878 -23.46269 -23.02981 -22.39773 -20.95607 -19.87324 -18.76072 -18.12476 -17.39964 -17.06737 -16.47248 -16.29138 -15.59834 -15.42892 -14.93231 -14.84969 -14.37650 -14.15235 -13.92678 -13.75899 -13.60078 -13.37058 -13.17143 -12.85709 -12.73403 -12.59374 -12.42245 -12.22178 -11.92609 -11.81129 -11.71636 -11.45153 -11.08273 -10.77734 -10.56161 -10.38077 -10.27872 -10.21570 -10.11994 -9.92816 -9.71080 -9.67358 -9.29401 -9.14573 -8.58852 -8.50654 -6.59481 -5.83614 -3.34124 0.31168 0.79279 2.67751 2.78128 3.22655 3.33703 3.41083 3.42547 3.53323 4.11648 4.26799 4.33979 4.45048 4.52286 4.59546 4.86554 4.98893 5.02166 5.14609 5.17587 5.20502 5.26715 5.36605 5.43062 5.51402 5.54953 5.58613 5.59737 5.64030 5.80523 5.90152 6.01236 6.03271 6.13398 6.22507 6.38450 6.52046 6.54865 6.61030 6.78270 6.93189 7.25247 7.29439 7.55036 7.55847 7.72291 7.77362 8.15339 8.46451 9.18683 9.79323 10.40035 11.24474 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.002570 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.669881 B =10892.220539 C =11335.083748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.171 3.829 3 C -0.193 4.193 4 C -0.036 4.036 5 C -0.203 4.203 6 C 0.579 3.421 7 O -0.524 6.524 8 N -0.635 5.635 9 C 0.121 3.879 10 C -0.072 4.072 11 C 0.091 3.909 12 C -0.108 4.108 13 C 0.147 3.853 14 N -0.589 5.589 15 C -0.259 4.259 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.175 3.825 24 C -0.128 4.128 25 C 0.373 3.627 26 O -0.459 6.459 27 N -0.511 5.511 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.080 0.920 43 H 0.020 0.980 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.555 -4.011 -3.765 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.033 3.967 3 C -0.213 4.213 4 C -0.062 4.062 5 C -0.209 4.209 6 C 0.368 3.632 7 O -0.401 6.401 8 N -0.370 5.370 9 C 0.000 4.000 10 C -0.072 4.072 11 C -0.032 4.032 12 C -0.147 4.147 13 C 0.020 3.980 14 N -0.311 5.311 15 C -0.389 4.389 16 H 0.078 0.922 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.730 3.270 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.049 3.951 24 C -0.167 4.167 25 C 0.193 3.807 26 O -0.267 6.267 27 N -0.231 5.231 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -21.608 -5.489 -4.515 22.747 hybrid contribution 0.911 1.396 0.789 1.845 sum -20.697 -4.092 -3.726 21.424 Atomic orbital electron populations 1.20827 0.88144 1.03976 1.03600 1.21289 0.97074 0.87278 0.91073 1.21939 0.94534 0.99576 1.05216 1.22311 0.94669 0.98042 0.91156 1.21125 0.94959 0.94367 1.10459 1.17463 0.85464 0.83089 0.77135 1.90826 1.71666 1.27886 1.49702 1.49950 1.09838 1.06535 1.70671 1.23304 0.81174 0.95623 0.99932 1.21986 0.92785 0.95954 0.96519 1.23660 0.99388 0.80308 0.99804 1.21772 1.00470 1.00179 0.92328 1.20898 0.89353 0.90036 0.97672 1.43903 1.59485 1.23438 1.04290 1.19083 1.02128 1.22111 0.95568 0.92160 1.25240 0.95641 1.00454 0.97632 1.70003 1.19012 1.41607 1.23569 0.86338 0.79041 0.81955 0.79630 1.21288 1.21561 1.20406 1.20586 0.89334 1.00809 0.84378 1.22074 1.00762 0.94903 0.99001 1.19147 0.86047 0.85165 0.90372 1.84735 1.76372 1.31800 1.33757 1.67148 1.09321 1.30441 1.16175 0.89810 0.90071 0.90084 0.83756 0.82835 0.89666 0.89681 0.89969 0.89424 0.93020 0.91743 0.96336 0.92601 0.93562 0.90166 0.96177 0.92775 0.91890 0.73579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.01 0.37 -0.25 16 2 C 0.17 1.60 6.78 -82.53 -0.56 1.04 16 3 C -0.19 -1.57 9.71 -39.50 -0.38 -1.95 16 4 C -0.04 -0.36 9.18 -38.89 -0.36 -0.72 16 5 C -0.20 -2.64 5.90 -104.69 -0.62 -3.26 16 6 C 0.58 8.99 7.98 -12.48 -0.10 8.89 16 7 O -0.52 -9.88 15.95 -16.39 -0.26 -10.14 16 8 N -0.63 -8.88 3.43 -181.43 -0.62 -9.51 16 9 C 0.12 1.82 7.63 -3.15 -0.02 1.80 16 10 C -0.07 -1.03 0.77 -154.42 -0.12 -1.15 16 11 C 0.09 1.02 5.38 -3.15 -0.02 1.00 16 12 C -0.11 -1.72 5.22 -26.73 -0.14 -1.86 16 13 C 0.15 2.93 6.38 -3.66 -0.02 2.91 16 14 N -0.59 -13.86 2.93 -172.51 -0.51 -14.36 16 15 C -0.26 -6.81 9.50 -15.06 -0.14 -6.96 16 16 H 0.06 1.57 7.86 -52.49 -0.41 1.16 16 17 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16 18 N -0.90 -25.28 11.50 55.49 0.64 -24.65 16 19 Si 0.90 20.98 29.57 -169.99 -5.03 15.95 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.17 3.80 5.14 -3.91 -0.02 3.78 16 24 C -0.13 -2.06 5.24 -26.97 -0.14 -2.20 16 25 C 0.37 5.01 7.77 -16.61 -0.13 4.88 16 26 O -0.46 -6.26 11.68 -39.63 -0.46 -6.73 16 27 N -0.51 -6.28 10.28 -9.21 -0.09 -6.38 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.08 0.28 8.07 -51.93 -0.42 -0.13 16 31 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.15 1.26 4.20 -52.49 -0.22 1.04 16 33 H 0.09 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.08 1.43 7.41 -51.93 -0.38 1.04 16 35 H 0.08 0.79 6.78 -51.93 -0.35 0.44 16 36 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 37 H 0.05 0.78 8.01 -51.93 -0.42 0.37 16 38 H 0.06 1.02 8.14 -51.94 -0.42 0.59 16 39 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 40 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.08 1.98 6.41 -51.92 -0.33 1.65 16 43 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 44 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.40 3.80 9.06 45.56 0.41 4.21 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -33.48 368.79 -9.12 -42.61 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.85 Total: 1.51 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.49 Total: 6.13 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.58 Total: -54.89 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.72 Total: -16.87 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.48 -9.12 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050676849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.413 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds