Wall clock time and date at job start Tue Mar 31 2020 16:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38360 * 119.40487 * 2 1 4 4 C 1.38338 * 119.45643 * 180.02562 * 3 2 1 5 5 C 1.39986 * 118.34806 * 0.02562 * 4 3 2 6 6 C 1.47527 * 120.59306 * 179.97438 * 5 4 3 7 7 O 1.21599 * 119.99866 * 186.66160 * 6 5 4 8 8 N 1.34769 * 120.00245 * 6.66747 * 6 5 4 9 9 C 1.47671 * 134.46018 * 184.80104 * 8 6 5 10 10 C 1.53508 * 85.98117 * 204.33574 * 9 8 6 11 11 C 1.47672 * 134.45551 * 4.82834 * 8 6 5 12 12 C 1.52668 * 113.57835 * 91.01325 * 10 9 8 13 13 C 1.53335 * 109.10950 * 73.81364 * 12 10 9 14 14 N 1.46880 * 108.76085 * 52.40822 * 13 12 10 15 15 C 1.36937 * 120.46517 * 124.47339 * 14 13 12 16 16 H 1.07998 * 119.99862 * 324.45820 * 15 14 13 17 17 C 1.38816 * 120.00280 * 144.73520 * 15 14 13 18 18 N 1.31621 * 119.99548 * 346.60368 * 17 15 14 19 19 Si 1.86799 * 120.00192 * 166.60127 * 17 15 14 20 20 H 1.48500 * 109.47016 * 90.00037 * 19 17 15 21 21 H 1.48497 * 109.46899 * 210.00017 * 19 17 15 22 22 H 1.48502 * 109.47008 * 330.00166 * 19 17 15 23 23 C 1.46884 * 119.06882 * 304.74250 * 14 13 12 24 24 C 1.52676 * 113.56180 * 222.23713 * 10 9 8 25 25 C 1.40280 * 118.81128 * 0.27103 * 5 4 3 26 26 O 1.35423 * 119.80214 * 179.72305 * 25 5 4 27 27 N 1.31879 * 119.40774 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47276 * 89.99964 * 1 2 3 29 29 H 1.09007 * 109.46853 * 209.99773 * 1 2 3 30 30 H 1.08996 * 109.47178 * 329.99717 * 1 2 3 31 31 H 1.07999 * 120.27025 * 0.02648 * 3 2 1 32 32 H 1.07994 * 120.82473 * 180.02562 * 4 3 2 33 33 H 1.09002 * 113.78917 * 90.06750 * 9 8 6 34 34 H 1.08997 * 113.89601 * 318.61537 * 9 8 6 35 35 H 1.08993 * 113.79271 * 41.39277 * 11 8 6 36 36 H 1.09001 * 113.78705 * 269.92649 * 11 8 6 37 37 H 1.09001 * 109.52660 * 313.92979 * 12 10 9 38 38 H 1.08988 * 109.59405 * 193.74266 * 12 10 9 39 39 H 1.09003 * 109.59305 * 292.62535 * 13 12 10 40 40 H 1.08995 * 109.58846 * 172.19040 * 13 12 10 41 41 H 0.97003 * 119.99564 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.58877 * 175.04590 * 23 14 13 43 43 H 1.08997 * 109.59116 * 295.47529 * 23 14 13 44 44 H 1.08996 * 109.53220 * 46.07240 * 24 10 9 45 45 H 1.09003 * 109.52968 * 166.21955 * 24 10 9 46 46 H 0.96704 * 113.99301 * 90.00528 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0248 -0.0016 6 6 5.7097 -0.0813 -0.0028 7 8 6.2771 -1.1497 -0.1259 8 7 6.4276 1.0513 0.1327 9 6 7.8677 1.3747 0.0871 10 6 7.5112 2.5928 0.9506 11 6 6.0892 2.4661 0.3867 12 6 7.6003 2.3249 2.4509 13 6 9.0759 2.2525 2.8612 14 7 9.7604 3.4587 2.3776 15 6 10.4474 4.2630 3.2473 16 1 10.0804 4.4089 4.2525 17 6 11.6123 4.8955 2.8351 18 7 12.2009 4.5270 1.7170 19 14 12.3445 6.2695 3.8672 20 1 13.2986 5.6958 4.8500 21 1 13.0590 7.2254 2.9836 22 1 11.2579 6.9796 4.5887 23 6 9.6926 3.7934 0.9490 24 6 8.2262 3.8728 0.5250 25 6 3.4759 -1.2041 -0.0079 26 8 4.0993 -2.4062 -0.0148 27 7 2.1546 -1.1489 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6411 2.1376 0.0004 32 1 4.1223 2.1345 -0.0001 33 1 8.2293 1.6320 -0.9085 34 1 8.5001 0.6461 0.5943 35 1 5.3066 2.6039 1.1325 36 1 5.9224 3.0478 -0.5199 37 1 7.1111 1.3785 2.6817 38 1 7.1096 3.1311 2.9959 39 1 9.5356 1.3690 2.4181 40 1 9.1511 2.2003 3.9473 41 1 13.0148 4.9692 1.4288 42 1 10.1741 4.7560 0.7759 43 1 10.1966 3.0208 0.3683 44 1 8.1638 3.9824 -0.5576 45 1 7.7553 4.7303 1.0058 46 1 4.2805 -2.7603 0.8667 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050676849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:34 Heat of formation + Delta-G solvation = 1.720773 kcal Electronic energy + Delta-G solvation = -28676.347248 eV Core-core repulsion = 24760.424184 eV Total energy + Delta-G solvation = -3915.923064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25749 -41.32360 -39.35448 -38.26723 -37.41733 -34.59796 -33.94838 -32.62558 -32.14838 -31.44204 -29.40304 -28.15410 -27.44686 -25.95345 -24.30390 -23.98626 -23.79907 -22.49577 -20.95361 -19.76527 -19.46863 -18.52841 -18.08187 -17.93152 -17.27350 -16.85818 -16.65016 -16.43580 -15.76187 -15.53788 -15.35594 -15.18178 -14.95099 -14.85955 -14.73254 -14.22059 -13.97493 -13.82379 -13.55356 -13.32335 -13.13707 -13.03744 -12.99433 -12.93485 -12.86932 -12.64621 -12.57077 -12.28440 -12.02985 -11.82376 -11.42180 -11.30335 -11.21719 -11.02386 -10.96297 -10.52583 -10.38785 -9.98726 -9.64372 -8.52876 -7.84945 -5.38873 -0.50812 0.05523 1.48176 1.49564 1.58891 1.64980 1.76268 2.42464 2.52567 2.69621 3.20782 3.26515 3.38679 3.57216 3.66624 3.74125 3.85122 3.91136 4.03786 4.17740 4.24345 4.39376 4.43489 4.44257 4.55322 4.62280 4.67499 4.72265 4.78366 4.81236 4.82182 4.91520 4.93940 5.03703 5.05731 5.14404 5.16664 5.20765 5.36300 5.38578 5.50912 5.53829 5.69474 5.81197 6.46261 6.48187 6.62544 6.80287 7.02605 7.20633 7.89062 8.43742 9.19999 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.002570 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.669881 B =10892.220539 C =11335.083748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.164 3.836 3 C -0.177 4.177 4 C -0.031 4.031 5 C -0.223 4.223 6 C 0.575 3.425 7 O -0.573 6.573 8 N -0.633 5.633 9 C 0.114 3.886 10 C -0.072 4.072 11 C 0.108 3.892 12 C -0.093 4.093 13 C 0.143 3.857 14 N -0.606 5.606 15 C -0.266 4.266 16 H 0.061 0.939 17 C -0.043 4.043 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.179 3.821 24 C -0.110 4.110 25 C 0.352 3.648 26 O -0.482 6.482 27 N -0.535 5.535 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.190 0.810 32 H 0.176 0.824 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.001 0.999 40 H 0.049 0.951 41 H 0.250 0.750 42 H 0.046 0.954 43 H -0.006 1.006 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.332 -1.587 -3.757 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.027 3.973 3 C -0.196 4.196 4 C -0.056 4.056 5 C -0.230 4.230 6 C 0.366 3.634 7 O -0.454 6.454 8 N -0.367 5.367 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.013 4.013 12 C -0.132 4.132 13 C 0.018 3.982 14 N -0.329 5.329 15 C -0.396 4.396 16 H 0.078 0.922 17 C -0.239 4.239 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.191 1.191 23 C 0.054 3.946 24 C -0.150 4.150 25 C 0.172 3.828 26 O -0.291 6.291 27 N -0.256 5.256 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.207 0.793 32 H 0.193 0.807 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.019 0.981 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.012 0.988 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -25.428 -3.045 -4.488 26.000 hybrid contribution 2.049 0.588 0.816 2.282 sum -23.379 -2.457 -3.673 23.793 Atomic orbital electron populations 1.20971 0.85520 1.05222 1.04657 1.22061 0.98826 0.87049 0.89413 1.22404 0.93857 1.00762 1.02616 1.22565 0.95584 0.97267 0.90178 1.20971 0.93225 0.95757 1.13056 1.17907 0.86620 0.82616 0.76251 1.90791 1.72815 1.29720 1.52102 1.49960 1.09168 1.07574 1.70019 1.23287 0.81901 0.95363 1.00290 1.21867 0.95545 0.94541 0.95328 1.23814 0.97332 0.78431 1.01735 1.21562 0.96941 1.01071 0.93652 1.20979 0.91920 0.88153 0.97172 1.44169 1.59737 1.24325 1.04714 1.19402 1.02198 1.22003 0.96012 0.92162 1.25965 0.96251 1.02850 0.98863 1.70159 1.19388 1.42921 1.25275 0.85337 0.78262 0.79194 0.77976 1.21511 1.21874 1.19144 1.20435 0.92920 0.97918 0.83367 1.21836 0.96377 0.96014 1.00744 1.19345 0.86727 0.85109 0.91621 1.84680 1.76792 1.32636 1.35017 1.67193 1.08793 1.32351 1.17250 0.88640 0.90701 0.87006 0.79328 0.80656 0.88842 0.92597 0.87054 0.85942 0.92115 0.90610 0.98074 0.93242 0.94116 0.93580 0.98805 0.89967 0.91058 0.72460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 71.24 0.72 -0.08 16 2 C 0.16 2.53 6.78 42.58 0.29 2.82 16 3 C -0.18 -1.99 9.71 22.32 0.22 -1.78 16 4 C -0.03 -0.48 9.18 22.72 0.21 -0.27 16 5 C -0.22 -5.50 5.90 -19.91 -0.12 -5.62 16 6 C 0.57 17.61 7.98 86.69 0.69 18.30 16 7 O -0.57 -22.53 15.95 16.70 0.27 -22.27 16 8 N -0.63 -16.56 3.43 -846.18 -2.90 -19.47 16 9 C 0.11 3.37 7.63 86.32 0.66 4.03 16 10 C -0.07 -1.91 0.77 -52.03 -0.04 -1.95 16 11 C 0.11 1.92 5.38 86.31 0.46 2.39 16 12 C -0.09 -2.82 5.22 30.60 0.16 -2.66 16 13 C 0.14 5.82 6.38 86.42 0.55 6.37 16 14 N -0.61 -29.03 2.93 -699.69 -2.05 -31.07 16 15 C -0.27 -14.16 9.50 84.03 0.80 -13.36 16 16 H 0.06 3.15 7.86 -2.91 -0.02 3.13 16 17 C -0.04 -2.35 4.95 84.86 0.42 -1.93 16 18 N -0.93 -54.18 11.50 21.65 0.25 -53.94 16 19 Si 0.96 43.65 29.57 68.60 2.03 45.68 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 C 0.18 7.91 5.14 86.26 0.44 8.36 16 24 C -0.11 -3.32 5.24 30.44 0.16 -3.16 16 25 C 0.35 9.40 7.77 85.13 0.66 10.06 16 26 O -0.48 -13.87 11.68 -66.45 -0.78 -14.64 16 27 N -0.53 -12.54 10.28 -296.05 -3.04 -15.58 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.11 0.18 8.07 -2.39 -0.02 0.16 16 31 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.18 1.82 4.20 -2.91 -0.01 1.81 16 33 H 0.09 2.60 8.07 -2.39 -0.02 2.58 16 34 H 0.06 1.97 7.41 -2.39 -0.02 1.95 16 35 H 0.11 1.44 6.78 -2.39 -0.02 1.43 16 36 H 0.12 1.48 8.03 -2.39 -0.02 1.46 16 37 H 0.06 1.74 8.01 -2.39 -0.02 1.73 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.00 0.06 7.49 -2.39 -0.02 0.04 16 40 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 41 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.05 2.33 6.41 -2.38 -0.02 2.32 16 43 H -0.01 -0.30 8.07 -2.39 -0.02 -0.32 16 44 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.41 8.65 9.06 -74.05 -0.67 7.98 16 Total: -1.00 -78.35 368.79 0.40 -77.95 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.34 Total: 11.81 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 6.29 Total: 21.52 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -7.75 Total: -120.06 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.51 Total: -36.91 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -78.35 0.40 -77.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050676849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.673 kcal (2) G-P(sol) polarization free energy of solvation -78.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds