Wall clock time and date at job start Tue Mar 31 2020 17:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38630 * 120.75128 * 2 1 4 4 C 1.38559 * 119.34534 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.54525 * 180.02562 * 4 3 2 6 6 N 1.31524 * 120.90545 * 359.73990 * 4 3 2 7 7 C 1.32718 * 121.64302 * 0.52939 * 6 4 3 8 8 C 1.48162 * 119.72121 * 179.74998 * 7 6 4 9 9 O 1.21519 * 119.99981 * 189.35312 * 8 7 6 10 10 N 1.34777 * 120.00501 * 9.35762 * 8 7 6 11 11 C 1.47124 * 121.06649 * 181.33486 * 10 8 7 12 12 C 1.53227 * 108.72624 * 232.27665 * 11 10 8 13 13 O 1.43114 * 109.35343 * 305.79943 * 12 11 10 14 14 C 1.42358 * 113.99441 * 59.78081 * 13 12 11 15 15 C 1.52930 * 114.29727 * 74.95615 * 14 13 12 16 16 N 1.47172 * 87.84006 * 88.27594 * 15 14 13 17 17 C 1.36933 * 135.99400 * 206.64388 * 16 15 14 18 18 H 1.07996 * 120.00537 * 5.19423 * 17 16 15 19 19 C 1.38814 * 119.99749 * 185.19358 * 17 16 15 20 20 N 1.31627 * 119.99743 * 5.16614 * 19 17 16 21 21 Si 1.86794 * 120.00296 * 185.16491 * 19 17 16 22 22 H 1.48506 * 109.47302 * 265.00443 * 21 19 17 23 23 H 1.48501 * 109.47019 * 24.99940 * 21 19 17 24 24 H 1.48494 * 109.47400 * 145.00269 * 21 19 17 25 25 C 1.47177 * 88.00369 * 26.90262 * 16 15 14 26 26 C 1.47364 * 121.05538 * 1.31324 * 10 8 7 27 27 C 1.38583 * 120.75738 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46563 * 269.97549 * 1 2 3 29 29 H 1.08994 * 109.47282 * 29.97655 * 1 2 3 30 30 H 1.08994 * 109.46947 * 149.97866 * 1 2 3 31 31 H 1.07998 * 120.32391 * 0.04370 * 3 2 1 32 32 H 1.08994 * 109.47122 * 89.99829 * 5 4 3 33 33 H 1.08997 * 109.46827 * 210.00353 * 5 4 3 34 34 H 1.09003 * 109.46726 * 329.99548 * 5 4 3 35 35 H 1.08998 * 109.59286 * 112.50234 * 11 10 8 36 36 H 1.09004 * 109.58968 * 352.04768 * 11 10 8 37 37 H 1.09005 * 109.48913 * 185.83354 * 12 11 10 38 38 H 1.09005 * 109.49202 * 65.76713 * 12 11 10 39 39 H 1.09002 * 113.48817 * 333.53581 * 15 14 13 40 40 H 1.08999 * 113.54706 * 203.03094 * 15 14 13 41 41 H 0.97004 * 119.99759 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.49054 * 87.83943 * 25 16 15 43 43 H 1.09002 * 113.49142 * 218.34655 * 25 16 15 44 44 H 1.08997 * 109.75074 * 12.13708 * 26 10 8 45 45 H 1.08996 * 109.74291 * 251.40568 * 26 10 8 46 46 H 1.08009 * 120.46840 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2487 0.0127 0.0041 7 6 3.6082 -1.1497 -0.0010 8 6 4.3807 -2.4141 -0.0011 9 8 3.8120 -3.4735 -0.1768 10 7 5.7141 -2.3893 0.1937 11 6 6.5081 -3.6276 0.1692 12 6 7.3478 -3.6989 1.4489 13 8 8.1181 -2.4998 1.5782 14 6 7.3347 -1.3132 1.6486 15 6 6.6368 -1.0988 2.9923 16 7 7.8497 -0.4007 3.4478 17 6 8.4590 -0.1685 4.6519 18 1 8.0678 -0.6208 5.5512 19 6 9.5795 0.6484 4.7167 20 7 9.9961 1.2806 3.6400 21 14 10.4961 0.8504 6.3317 22 1 10.0068 2.0663 7.0299 23 1 10.2599 -0.3403 7.1871 24 1 11.9501 0.9857 6.0621 25 6 8.1171 -0.0562 2.0421 26 6 6.4232 -1.1207 0.4375 27 6 2.2158 -1.1909 -0.0005 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6936 2.1366 0.0007 32 1 4.5634 2.7607 1.0278 33 1 5.3260 2.3040 -0.5143 34 1 3.7996 3.2195 -0.5131 35 1 7.1659 -3.6229 -0.6999 36 1 5.8411 -4.4885 0.1211 37 1 8.0173 -4.5576 1.3972 38 1 6.6888 -3.8026 2.3110 39 1 6.4399 -2.0249 3.5323 40 1 5.7611 -0.4527 2.9300 41 1 10.7789 1.8517 3.6853 42 1 7.6394 0.8703 1.7234 43 1 9.1736 -0.0994 1.7775 44 1 5.7024 -0.3290 0.6414 45 1 7.0212 -0.8595 -0.4356 46 1 1.6959 -2.1376 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053324315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:01 Heat of formation + Delta-G solvation = 45.339910 kcal Electronic energy + Delta-G solvation = -29531.760464 eV Core-core repulsion = 25617.728867 eV Total energy + Delta-G solvation = -3914.031596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12196 -39.84424 -38.60169 -36.14120 -34.94532 -34.09318 -32.93389 -32.17896 -30.02058 -28.36029 -27.99867 -27.61715 -25.97434 -25.01178 -24.55857 -22.80777 -21.78198 -21.41985 -19.61820 -18.81589 -17.50786 -16.93059 -16.51358 -16.28189 -16.04616 -15.70035 -15.25631 -14.86137 -14.62214 -14.49917 -14.16841 -14.03416 -13.68104 -13.58030 -13.42972 -13.34037 -13.13541 -12.91119 -12.54292 -12.40035 -12.31237 -12.18468 -11.97234 -11.67849 -11.36935 -11.07382 -10.84753 -10.79640 -10.68269 -10.27661 -10.13495 -9.92596 -9.76318 -9.62213 -9.17389 -9.06958 -8.82899 -8.76896 -8.19855 -6.84364 -5.74310 -3.04141 0.50959 0.96254 2.66144 2.91919 3.41761 3.47000 3.49462 3.65569 3.86385 4.20049 4.32605 4.35756 4.48501 4.75574 4.82857 4.92941 5.06083 5.13681 5.20637 5.21189 5.27855 5.32027 5.35042 5.43115 5.46395 5.53265 5.55037 5.57036 5.65838 5.79046 5.88383 5.94851 5.98205 6.00087 6.08015 6.27218 6.37786 6.42188 6.55466 6.58318 6.82798 7.01225 7.18901 7.40483 7.53236 7.60221 7.91657 8.01315 8.13550 9.06815 9.73470 10.66386 11.44686 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003895 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.105925 B = 7187.013200 C = 8509.557768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.154 4.154 4 C 0.132 3.868 5 C -0.110 4.110 6 N -0.451 5.451 7 C 0.095 3.905 8 C 0.571 3.429 9 O -0.545 6.545 10 N -0.586 5.586 11 C 0.075 3.925 12 C 0.048 3.952 13 O -0.337 6.337 14 C 0.044 3.956 15 C 0.101 3.899 16 N -0.599 5.599 17 C -0.214 4.214 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.912 3.088 22 H -0.290 1.290 23 H -0.281 1.281 24 H -0.289 1.289 25 C 0.183 3.817 26 C 0.057 3.943 27 C -0.122 4.122 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.165 0.835 45 H 0.070 0.930 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 -1.253 -11.222 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.174 4.174 4 C -0.006 4.006 5 C -0.167 4.167 6 N -0.164 5.164 7 C -0.042 4.042 8 C 0.358 3.642 9 O -0.423 6.423 10 N -0.316 5.316 11 C -0.048 4.048 12 C -0.030 4.030 13 O -0.255 6.255 14 C 0.002 3.998 15 C -0.025 4.025 16 N -0.324 5.324 17 C -0.342 4.342 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.217 1.217 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.057 3.943 26 C -0.065 4.065 27 C -0.143 4.143 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.180 0.820 45 H 0.088 0.912 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.912 -1.708 -11.055 19.450 hybrid contribution -0.542 0.143 0.907 1.066 sum -16.454 -1.565 -10.148 19.395 Atomic orbital electron populations 1.20837 0.89669 1.03531 1.03200 1.20345 0.97084 0.92513 0.95245 1.22054 0.94718 0.98892 1.01711 1.21559 0.91356 0.94166 0.93530 1.20820 1.00540 0.91226 1.04115 1.67384 1.38381 0.97883 1.12770 1.21097 0.91686 0.91918 0.99495 1.17870 0.81745 0.87328 0.77263 1.90742 1.69543 1.30631 1.51425 1.48094 1.06067 1.09393 1.68090 1.22365 0.95000 0.87824 0.99570 1.22859 0.95280 0.89260 0.95584 1.87981 1.31227 1.12773 1.93489 1.23465 0.94209 0.89122 0.93047 1.22845 0.91448 0.95738 0.92511 1.45444 1.21803 1.62503 1.02667 1.18894 1.07367 1.24017 0.83889 0.90254 1.24771 0.99121 0.98835 0.97543 1.69829 1.26485 1.33119 1.27178 0.86099 0.79275 0.77734 0.82638 1.21702 1.20600 1.21571 1.21927 0.99297 0.89265 0.83810 1.23795 0.97747 0.87146 0.97855 1.21908 0.93518 0.99518 0.99363 0.90213 0.90798 0.90748 0.84291 0.89486 0.89735 0.90501 0.90542 0.88486 0.88082 0.92991 0.94408 0.94747 0.93647 0.93639 0.90910 0.81982 0.91209 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.06 36.01 0.36 -0.35 16 2 C -0.04 -0.42 5.91 -104.35 -0.62 -1.04 16 3 C -0.15 -1.43 9.45 -39.32 -0.37 -1.80 16 4 C 0.13 1.50 6.78 -82.60 -0.56 0.94 16 5 C -0.11 -1.02 10.17 36.01 0.37 -0.65 16 6 N -0.45 -6.26 5.94 -6.06 -0.04 -6.30 16 7 C 0.10 1.37 6.63 -83.01 -0.55 0.82 16 8 C 0.57 9.29 7.69 -12.18 -0.09 9.19 16 9 O -0.55 -9.65 15.83 5.35 0.08 -9.56 16 10 N -0.59 -9.46 3.03 -173.47 -0.53 -9.99 16 11 C 0.07 1.10 6.60 -3.58 -0.02 1.07 16 12 C 0.05 0.77 6.90 37.27 0.26 1.02 16 13 O -0.34 -6.95 10.55 -35.23 -0.37 -7.32 16 14 C 0.04 0.88 1.29 -90.66 -0.12 0.77 16 15 C 0.10 2.25 7.90 -8.18 -0.06 2.18 16 16 N -0.60 -15.96 3.77 -184.54 -0.70 -16.66 16 17 C -0.21 -6.20 10.74 -15.06 -0.16 -6.36 16 18 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.49 11.73 55.49 0.65 -26.84 16 21 Si 0.91 22.49 29.56 -169.99 -5.02 17.46 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.18 4.41 6.68 -8.04 -0.05 4.36 16 26 C 0.06 0.97 5.34 -3.68 -0.02 0.95 16 27 C -0.12 -1.46 9.33 -39.06 -0.36 -1.83 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.35 8.10 -51.93 -0.42 -0.08 16 30 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.35 7.06 -51.93 -0.37 0.98 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.05 0.86 7.30 -51.93 -0.38 0.48 16 39 H 0.04 0.84 7.36 -51.93 -0.38 0.46 16 40 H 0.04 0.75 7.93 -51.93 -0.41 0.33 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.05 1.06 8.09 -51.93 -0.42 0.64 16 43 H 0.07 1.96 7.50 -51.93 -0.39 1.57 16 44 H 0.16 2.71 3.73 -88.32 -0.33 2.38 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.15 1.64 7.68 -52.48 -0.40 1.24 16 LS Contribution 372.68 15.07 5.62 5.62 Total: -1.00 -34.67 372.68 -9.26 -43.93 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.85 Total: 0.65 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -2.11 Total: 9.01 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.61 Total: -59.78 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.29 Total: -16.88 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.67 -9.26 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053324315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.267 kcal (2) G-P(sol) polarization free energy of solvation -34.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds