Wall clock time and date at job start Tue Mar 31 2020 17:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38630 * 120.75128 * 2 1 4 4 C 1.38559 * 119.34534 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.54525 * 180.02562 * 4 3 2 6 6 N 1.31524 * 120.90545 * 359.73990 * 4 3 2 7 7 C 1.32718 * 121.64302 * 0.52939 * 6 4 3 8 8 C 1.48162 * 119.72121 * 179.74998 * 7 6 4 9 9 O 1.21519 * 119.99981 * 189.35312 * 8 7 6 10 10 N 1.34777 * 120.00501 * 9.35762 * 8 7 6 11 11 C 1.47124 * 121.06649 * 181.33486 * 10 8 7 12 12 C 1.53227 * 108.72624 * 232.27665 * 11 10 8 13 13 O 1.43114 * 109.35343 * 305.79943 * 12 11 10 14 14 C 1.42358 * 113.99441 * 59.78081 * 13 12 11 15 15 C 1.52930 * 114.29727 * 74.95615 * 14 13 12 16 16 N 1.47172 * 87.84006 * 88.27594 * 15 14 13 17 17 C 1.36933 * 135.99400 * 206.64388 * 16 15 14 18 18 H 1.07996 * 120.00537 * 5.19423 * 17 16 15 19 19 C 1.38814 * 119.99749 * 185.19358 * 17 16 15 20 20 N 1.31627 * 119.99743 * 5.16614 * 19 17 16 21 21 Si 1.86794 * 120.00296 * 185.16491 * 19 17 16 22 22 H 1.48506 * 109.47302 * 265.00443 * 21 19 17 23 23 H 1.48501 * 109.47019 * 24.99940 * 21 19 17 24 24 H 1.48494 * 109.47400 * 145.00269 * 21 19 17 25 25 C 1.47177 * 88.00369 * 26.90262 * 16 15 14 26 26 C 1.47364 * 121.05538 * 1.31324 * 10 8 7 27 27 C 1.38583 * 120.75738 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46563 * 269.97549 * 1 2 3 29 29 H 1.08994 * 109.47282 * 29.97655 * 1 2 3 30 30 H 1.08994 * 109.46947 * 149.97866 * 1 2 3 31 31 H 1.07998 * 120.32391 * 0.04370 * 3 2 1 32 32 H 1.08994 * 109.47122 * 89.99829 * 5 4 3 33 33 H 1.08997 * 109.46827 * 210.00353 * 5 4 3 34 34 H 1.09003 * 109.46726 * 329.99548 * 5 4 3 35 35 H 1.08998 * 109.59286 * 112.50234 * 11 10 8 36 36 H 1.09004 * 109.58968 * 352.04768 * 11 10 8 37 37 H 1.09005 * 109.48913 * 185.83354 * 12 11 10 38 38 H 1.09005 * 109.49202 * 65.76713 * 12 11 10 39 39 H 1.09002 * 113.48817 * 333.53581 * 15 14 13 40 40 H 1.08999 * 113.54706 * 203.03094 * 15 14 13 41 41 H 0.97004 * 119.99759 * 179.97438 * 20 19 17 42 42 H 1.08999 * 113.49054 * 87.83943 * 25 16 15 43 43 H 1.09002 * 113.49142 * 218.34655 * 25 16 15 44 44 H 1.08997 * 109.75074 * 12.13708 * 26 10 8 45 45 H 1.08996 * 109.74291 * 251.40568 * 26 10 8 46 46 H 1.08009 * 120.46840 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1914 0.0000 4 6 3.6011 1.1574 -0.0005 5 6 4.3762 2.4498 0.0000 6 7 4.2487 0.0127 0.0041 7 6 3.6082 -1.1497 -0.0010 8 6 4.3807 -2.4141 -0.0011 9 8 3.8120 -3.4735 -0.1768 10 7 5.7141 -2.3893 0.1937 11 6 6.5081 -3.6276 0.1692 12 6 7.3478 -3.6989 1.4489 13 8 8.1181 -2.4998 1.5782 14 6 7.3347 -1.3132 1.6486 15 6 6.6368 -1.0988 2.9923 16 7 7.8497 -0.4007 3.4478 17 6 8.4590 -0.1685 4.6519 18 1 8.0678 -0.6208 5.5512 19 6 9.5795 0.6484 4.7167 20 7 9.9961 1.2806 3.6400 21 14 10.4961 0.8504 6.3317 22 1 10.0068 2.0663 7.0299 23 1 10.2599 -0.3403 7.1871 24 1 11.9501 0.9857 6.0621 25 6 8.1171 -0.0562 2.0421 26 6 6.4232 -1.1207 0.4375 27 6 2.2158 -1.1909 -0.0005 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 1.6936 2.1366 0.0007 32 1 4.5634 2.7607 1.0278 33 1 5.3260 2.3040 -0.5143 34 1 3.7996 3.2195 -0.5131 35 1 7.1659 -3.6229 -0.6999 36 1 5.8411 -4.4885 0.1211 37 1 8.0173 -4.5576 1.3972 38 1 6.6888 -3.8026 2.3110 39 1 6.4399 -2.0249 3.5323 40 1 5.7611 -0.4527 2.9300 41 1 10.7789 1.8517 3.6853 42 1 7.6394 0.8703 1.7234 43 1 9.1736 -0.0994 1.7775 44 1 5.7024 -0.3290 0.6414 45 1 7.0212 -0.8595 -0.4356 46 1 1.6959 -2.1376 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053324315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:00 Heat of formation + Delta-G solvation = 22.657516 kcal Electronic energy + Delta-G solvation = -29532.744046 eV Core-core repulsion = 25617.728867 eV Total energy + Delta-G solvation = -3915.015179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23521 -41.16488 -39.95464 -37.78151 -36.11520 -35.06205 -34.29817 -33.79823 -31.54145 -29.64538 -29.06886 -28.34430 -27.69890 -26.72548 -25.80370 -24.35847 -23.30785 -22.25512 -20.94833 -20.32064 -18.85878 -18.53829 -17.92283 -17.27676 -17.13842 -17.02167 -16.88768 -16.47261 -16.02686 -15.72939 -15.51297 -15.31920 -15.06809 -14.95129 -14.65072 -14.25646 -14.12006 -14.10454 -13.83284 -13.47383 -13.33228 -13.15244 -13.07128 -12.89700 -12.84032 -12.76287 -12.63070 -12.40678 -12.17268 -11.96486 -11.71782 -11.52067 -11.38521 -10.96776 -10.73270 -10.53404 -10.05899 -9.93919 -9.58379 -8.94760 -7.92977 -5.25162 -0.41299 0.14458 1.44695 1.47425 1.56308 1.56617 1.73687 2.45726 2.64599 2.72417 2.87462 3.29344 3.32988 3.45529 3.60568 3.65933 3.81578 3.94285 3.98159 4.02369 4.15900 4.23187 4.30220 4.46609 4.49519 4.57843 4.62802 4.63606 4.72424 4.74488 4.80047 4.81678 4.84480 4.86970 4.98414 5.07591 5.13024 5.14741 5.18300 5.27543 5.29522 5.41269 5.43443 5.76796 5.87002 6.15782 6.37129 6.63422 6.88150 6.95792 7.56271 8.56123 9.25800 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003895 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.105925 B = 7187.013200 C = 8509.557768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 C -0.141 4.141 4 C 0.118 3.882 5 C -0.108 4.108 6 N -0.476 5.476 7 C 0.065 3.935 8 C 0.569 3.431 9 O -0.566 6.566 10 N -0.591 5.591 11 C 0.077 3.923 12 C 0.047 3.953 13 O -0.367 6.367 14 C 0.068 3.932 15 C 0.106 3.894 16 N -0.628 5.628 17 C -0.235 4.235 18 H 0.080 0.920 19 C -0.060 4.060 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.282 1.282 23 H -0.271 1.271 24 H -0.291 1.291 25 C 0.183 3.817 26 C 0.071 3.929 27 C -0.127 4.127 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.130 0.870 38 H 0.042 0.958 39 H 0.034 0.966 40 H 0.045 0.955 41 H 0.251 0.749 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.172 0.828 45 H 0.075 0.925 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.142 -0.668 -11.500 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.160 4.160 4 C -0.021 4.021 5 C -0.165 4.165 6 N -0.190 5.190 7 C -0.071 4.071 8 C 0.357 3.643 9 O -0.445 6.445 10 N -0.322 5.322 11 C -0.045 4.045 12 C -0.030 4.030 13 O -0.285 6.285 14 C 0.026 3.974 15 C -0.020 4.020 16 N -0.354 5.354 17 C -0.363 4.363 18 H 0.097 0.903 19 C -0.254 4.254 20 N -0.597 5.597 21 Si 0.809 3.191 22 H -0.209 1.209 23 H -0.196 1.196 24 H -0.218 1.218 25 C 0.057 3.943 26 C -0.052 4.052 27 C -0.148 4.148 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.194 0.806 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.187 0.813 45 H 0.093 0.907 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.086 -1.150 -11.344 21.380 hybrid contribution 0.028 -0.038 0.961 0.962 sum -18.058 -1.188 -10.383 20.864 Atomic orbital electron populations 1.20933 0.86913 1.04952 1.04199 1.20754 0.98908 0.91560 0.93581 1.22462 0.93864 1.00421 0.99257 1.21974 0.92750 0.93837 0.93518 1.20884 1.00463 0.91227 1.03973 1.67097 1.39428 0.98506 1.13981 1.20924 0.92450 0.91335 1.02356 1.18226 0.81594 0.88017 0.76444 1.90712 1.69785 1.31612 1.52441 1.48142 1.06377 1.09355 1.68288 1.22416 0.95045 0.87740 0.99267 1.23102 0.95699 0.88240 0.95969 1.87921 1.32885 1.14033 1.93707 1.23089 0.92942 0.87743 0.93623 1.22909 0.90597 0.95098 0.93376 1.45754 1.23626 1.63116 1.02903 1.19250 1.08001 1.24041 0.84959 0.90272 1.25629 0.99931 0.98753 1.01051 1.70006 1.26753 1.33725 1.29170 0.85033 0.77427 0.78002 0.78651 1.20861 1.19625 1.21751 1.21855 0.97662 0.91541 0.83211 1.23657 0.97313 0.87998 0.96266 1.22059 0.92735 1.00787 0.99252 0.89217 0.88606 0.90193 0.80585 0.90128 0.90896 0.87258 0.89110 0.87523 0.85194 0.93920 0.94781 0.93733 0.94006 0.93286 0.94559 0.81279 0.90701 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.06 71.24 0.72 -0.27 16 2 C -0.04 -0.66 5.91 -19.69 -0.12 -0.77 16 3 C -0.14 -2.17 9.45 22.44 0.21 -1.95 16 4 C 0.12 2.48 6.78 42.68 0.29 2.77 16 5 C -0.11 -1.84 10.17 71.24 0.72 -1.12 16 6 N -0.48 -12.97 5.94 -173.09 -1.03 -14.00 16 7 C 0.07 1.85 6.63 41.90 0.28 2.13 16 8 C 0.57 18.43 7.69 86.88 0.67 19.10 16 9 O -0.57 -19.94 15.83 -3.77 -0.06 -20.00 16 10 N -0.59 -18.96 3.03 -821.03 -2.49 -21.45 16 11 C 0.08 2.20 6.60 86.34 0.57 2.77 16 12 C 0.05 1.47 6.90 72.06 0.50 1.97 16 13 O -0.37 -15.32 10.55 -148.98 -1.57 -16.89 16 14 C 0.07 2.81 1.29 -10.82 -0.01 2.80 16 15 C 0.11 4.79 7.90 83.33 0.66 5.45 16 16 N -0.63 -34.40 3.77 -738.64 -2.79 -37.19 16 17 C -0.23 -13.85 10.74 84.03 0.90 -12.95 16 18 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 19 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 20 N -0.95 -58.18 11.73 21.65 0.25 -57.93 16 21 Si 0.98 46.78 29.56 68.60 2.03 48.80 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 C 0.18 9.16 6.68 83.42 0.56 9.72 16 26 C 0.07 2.40 5.34 86.14 0.46 2.86 16 27 C -0.13 -2.89 9.33 22.61 0.21 -2.68 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 30 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.09 8.08 -2.39 -0.02 1.08 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.11 2.86 7.06 -2.38 -0.02 2.84 16 37 H 0.13 3.27 8.14 -2.38 -0.02 3.25 16 38 H 0.04 1.41 7.30 -2.38 -0.02 1.40 16 39 H 0.03 1.54 7.36 -2.39 -0.02 1.52 16 40 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 41 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.05 2.38 8.09 -2.39 -0.02 2.36 16 43 H 0.04 2.05 7.50 -2.39 -0.02 2.03 16 44 H 0.17 5.69 3.73 -74.24 -0.28 5.41 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.15 3.20 7.68 -2.91 -0.02 3.18 16 Total: -1.00 -76.99 372.68 2.15 -74.84 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.72 Total: 17.04 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 7.08 Total: 26.77 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -6.05 Total: -130.56 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -1.63 Total: -36.89 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.99 2.15 -74.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053324315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.494 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds