Wall clock time and date at job start Tue Mar 31 2020 16:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38624 * 120.32200 * 2 1 4 4 C 1.38590 * 118.49002 * 180.02562 * 3 2 1 5 5 C 1.39318 * 119.05271 * 0.02562 * 4 3 2 6 6 C 1.48170 * 119.71622 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00567 * 9.47208 * 6 5 4 8 8 N 1.34778 * 119.99613 * 189.47313 * 6 5 4 9 9 C 1.47132 * 121.06045 * 181.25891 * 8 6 5 10 10 C 1.53228 * 108.72575 * 232.32117 * 9 8 6 11 11 O 1.43131 * 109.35050 * 305.80065 * 10 9 8 12 12 C 1.42355 * 113.98956 * 59.78456 * 11 10 9 13 13 C 1.52927 * 114.30068 * 74.95569 * 12 11 10 14 14 N 1.47165 * 87.84394 * 88.27281 * 13 12 11 15 15 C 1.36940 * 135.99911 * 206.65004 * 14 13 12 16 16 H 1.07997 * 119.99963 * 7.83910 * 15 14 13 17 17 C 1.38814 * 119.99626 * 187.84005 * 15 14 13 18 18 N 1.31620 * 119.99529 * 195.18910 * 17 15 14 19 19 Si 1.86798 * 120.00433 * 15.18864 * 17 15 14 20 20 H 1.48499 * 109.46807 * 270.00053 * 19 17 15 21 21 H 1.48498 * 109.46824 * 30.00028 * 19 17 15 22 22 H 1.48497 * 109.46864 * 150.00059 * 19 17 15 23 23 C 1.47181 * 88.00515 * 26.90083 * 14 13 12 24 24 C 1.47360 * 121.06057 * 1.28903 * 8 6 5 25 25 N 1.32713 * 120.55631 * 0.25120 * 5 4 3 26 26 C 1.31523 * 121.64013 * 359.47546 * 25 5 4 27 27 C 1.50699 * 119.54404 * 180.26830 * 26 25 5 28 28 H 1.09006 * 109.47043 * 89.99944 * 1 2 3 29 29 H 1.08998 * 109.47159 * 209.99668 * 1 2 3 30 30 H 1.09000 * 109.47329 * 329.99936 * 1 2 3 31 31 H 1.08001 * 120.76138 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.47473 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.59217 * 112.54614 * 9 8 6 34 34 H 1.08999 * 109.59331 * 352.09245 * 9 8 6 35 35 H 1.08999 * 109.48679 * 185.84181 * 10 9 8 36 36 H 1.08998 * 109.49069 * 65.76472 * 10 9 8 37 37 H 1.09003 * 113.49242 * 333.53038 * 13 12 11 38 38 H 1.09001 * 113.55119 * 203.02271 * 13 12 11 39 39 H 0.97001 * 120.00360 * 354.93375 * 18 17 15 40 40 H 1.09000 * 113.48852 * 87.83886 * 23 14 13 41 41 H 1.08999 * 113.49498 * 218.34989 * 23 14 13 42 42 H 1.09002 * 109.74555 * 12.08149 * 24 8 6 43 43 H 1.09002 * 109.73975 * 251.36390 * 24 8 6 44 44 H 1.09006 * 109.47013 * 270.25236 * 27 26 25 45 45 H 1.08991 * 109.47452 * 30.25535 * 27 26 25 46 46 H 1.09002 * 109.46962 * 150.26028 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 -0.0005 5 6 4.2293 -0.0866 -0.0016 6 6 5.7096 -0.1511 -0.0028 7 8 6.3620 0.8593 0.1704 8 7 6.3325 -1.3306 -0.1959 9 6 7.8006 -1.4263 -0.1743 10 6 8.2666 -2.1289 -1.4538 11 8 7.5895 -3.3836 -1.5794 12 6 6.1719 -3.2720 -1.6471 13 6 5.6439 -2.7674 -2.9907 14 7 5.6187 -4.1673 -3.4436 15 6 5.7078 -4.8151 -4.6468 16 1 5.9549 -4.2620 -5.5409 17 6 5.4805 -6.1827 -4.7173 18 7 5.8497 -6.8570 -5.7857 19 14 4.6509 -7.0662 -3.2958 20 1 5.6820 -7.5381 -2.3369 21 1 3.7239 -6.1330 -2.6065 22 1 3.8874 -8.2296 -3.8141 23 6 5.4495 -4.5656 -2.0369 24 6 5.5650 -2.5654 -0.4361 25 7 3.5217 -1.2093 -0.0071 26 6 2.2065 -1.1960 -0.0015 27 6 1.4502 -2.4994 -0.0020 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6846 2.1420 0.0004 32 1 4.1692 2.0651 -0.0001 33 1 8.1165 -2.0027 0.6952 34 1 8.2314 -0.4261 -0.1288 35 1 9.3420 -2.2994 -1.4038 36 1 8.0368 -1.5036 -2.3164 37 1 6.3580 -2.1479 -3.5333 38 1 4.6549 -2.3135 -2.9272 39 1 6.2131 -6.3884 -6.5534 40 1 4.4082 -4.5952 -1.7160 41 1 5.9990 -5.4689 -1.7719 42 1 4.5229 -2.3178 -0.6382 43 1 5.6273 -3.2135 0.4380 44 1 1.2674 -2.8130 -1.0298 45 1 2.0377 -3.2607 0.5111 46 1 0.4982 -2.3673 0.5123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053342405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:07 Heat of formation + Delta-G solvation = 52.038999 kcal Electronic energy + Delta-G solvation = -29764.866876 eV Core-core repulsion = 25851.125774 eV Total energy + Delta-G solvation = -3913.741102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.26266 -40.07570 -38.82103 -36.42574 -34.92517 -34.08106 -33.29598 -32.39372 -30.37969 -28.82152 -28.34426 -27.31730 -25.92150 -25.48208 -23.85309 -23.16526 -22.04313 -21.32161 -19.91560 -19.04012 -17.84631 -17.40885 -16.92158 -16.24867 -15.98790 -15.81587 -15.57315 -15.06117 -14.70457 -14.63942 -14.58550 -13.89102 -13.78728 -13.74517 -13.57537 -13.30618 -13.23177 -13.14656 -12.98585 -12.82556 -12.51132 -12.33913 -11.94091 -11.71537 -11.65439 -11.28240 -10.99847 -10.75409 -10.59119 -10.37551 -10.24455 -10.06196 -9.79659 -9.33204 -9.14901 -9.08667 -8.97695 -8.71935 -8.31576 -7.13413 -6.25852 -3.16547 0.39702 0.90025 2.55739 2.80535 3.44240 3.49467 3.56199 3.64479 3.74335 3.98026 4.31472 4.38148 4.51114 4.54211 4.64070 4.72572 4.87985 4.98378 5.00245 5.10852 5.13553 5.21155 5.25365 5.30170 5.33535 5.42155 5.44909 5.51793 5.58247 5.68635 5.74541 5.79326 5.82063 5.91990 5.93460 6.12995 6.16573 6.18196 6.28578 6.31530 6.41665 6.57905 6.69370 7.14480 7.27565 7.47769 7.66940 8.03081 8.28107 9.01949 9.55472 10.40886 11.24355 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004701 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.707009 B = 5955.320835 C = 7664.139683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.114 4.114 5 C 0.083 3.917 6 C 0.573 3.427 7 O -0.543 6.543 8 N -0.587 5.587 9 C 0.075 3.925 10 C 0.049 3.951 11 O -0.339 6.339 12 C 0.058 3.942 13 C 0.103 3.897 14 N -0.613 5.613 15 C -0.300 4.300 16 H 0.080 0.920 17 C -0.023 4.023 18 N -0.933 5.933 19 Si 1.061 2.939 20 H -0.291 1.291 21 H -0.281 1.281 22 H -0.295 1.295 23 C 0.122 3.878 24 C 0.055 3.945 25 N -0.445 5.445 26 C 0.126 3.874 27 C -0.114 4.114 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.166 0.834 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 15.538 16.336 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.117 4.117 3 C -0.104 4.104 4 C -0.134 4.134 5 C -0.054 4.054 6 C 0.360 3.640 7 O -0.421 6.421 8 N -0.318 5.318 9 C -0.048 4.048 10 C -0.029 4.029 11 O -0.256 6.256 12 C 0.016 3.984 13 C -0.024 4.024 14 N -0.341 5.341 15 C -0.426 4.426 16 H 0.098 0.902 17 C -0.222 4.222 18 N -0.575 5.575 19 Si 0.892 3.108 20 H -0.219 1.219 21 H -0.208 1.208 22 H -0.223 1.223 23 C -0.005 4.005 24 C -0.068 4.068 25 N -0.157 5.157 26 C -0.013 4.013 27 C -0.171 4.171 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.181 0.819 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.927 13.488 16.693 23.244 hybrid contribution 0.097 2.565 -0.697 2.659 sum -8.831 16.053 15.996 24.322 Atomic orbital electron populations 1.20886 0.89791 1.03512 1.03163 1.20937 0.97849 0.93446 0.99508 1.21509 0.93534 0.98450 0.96903 1.22028 0.94892 0.98721 0.97803 1.21074 0.93913 0.89738 1.00704 1.17864 0.85934 0.83088 0.77125 1.90750 1.65878 1.34187 1.51238 1.48043 1.06985 1.08281 1.68510 1.22376 0.79987 1.02930 0.99477 1.22893 0.97544 0.86678 0.95776 1.87960 1.16812 1.27266 1.93597 1.23183 0.82184 0.99397 0.93682 1.22808 0.97546 0.89890 0.92141 1.45993 1.85653 1.00904 1.01529 1.20086 1.45529 0.92844 0.84191 0.90236 1.25758 1.00004 0.92823 1.03613 1.70894 1.44202 1.36358 1.06060 0.83800 0.76829 0.75469 0.74674 1.21889 1.20780 1.22266 1.22630 0.96839 0.94905 0.86078 1.23792 1.01240 0.84109 0.97613 1.67308 1.07540 1.28719 1.12124 1.21395 0.89384 0.95607 0.94899 1.20896 0.99370 0.92718 1.04088 0.90261 0.90367 0.91131 0.84024 0.83445 0.90443 0.88281 0.87791 0.92768 0.93820 0.94357 0.92922 0.92088 0.91943 0.81856 0.91060 0.89502 0.89880 0.90053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.62 36.01 0.35 -0.29 16 2 C -0.12 -0.99 5.91 -104.36 -0.62 -1.61 16 3 C -0.08 -0.67 9.85 -39.31 -0.39 -1.06 16 4 C -0.11 -1.25 9.63 -39.05 -0.38 -1.63 16 5 C 0.08 1.12 6.64 -83.00 -0.55 0.57 16 6 C 0.57 8.83 7.69 -12.18 -0.09 8.73 16 7 O -0.54 -9.21 15.83 5.35 0.08 -9.12 16 8 N -0.59 -8.92 3.03 -173.47 -0.53 -9.45 16 9 C 0.07 1.03 6.60 -3.58 -0.02 1.00 16 10 C 0.05 0.74 6.90 37.28 0.26 1.00 16 11 O -0.34 -6.63 10.55 -35.23 -0.37 -7.00 16 12 C 0.06 1.10 1.29 -90.67 -0.12 0.98 16 13 C 0.10 2.20 7.90 -8.19 -0.06 2.13 16 14 N -0.61 -15.69 3.63 -184.54 -0.67 -16.36 16 15 C -0.30 -8.91 11.03 -15.06 -0.17 -9.08 16 16 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 17 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 18 N -0.93 -29.94 13.70 55.49 0.76 -29.18 16 19 Si 1.06 26.70 25.51 -169.99 -4.34 22.37 16 20 H -0.29 -7.12 6.97 56.52 0.39 -6.73 16 21 H -0.28 -6.36 5.64 56.52 0.32 -6.04 16 22 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 23 C 0.12 2.65 5.04 -8.04 -0.04 2.61 16 24 C 0.06 0.87 5.35 -3.68 -0.02 0.85 16 25 N -0.44 -5.76 5.93 -6.06 -0.04 -5.79 16 26 C 0.13 1.33 6.78 -82.61 -0.56 0.77 16 27 C -0.11 -0.95 9.77 36.01 0.35 -0.60 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.35 5.95 -51.93 -0.31 0.04 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.15 1.51 7.67 -52.49 -0.40 1.11 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.30 7.05 -51.93 -0.37 0.93 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.05 0.87 7.30 -51.93 -0.38 0.49 16 37 H 0.04 0.95 7.36 -51.93 -0.38 0.57 16 38 H 0.04 0.79 7.93 -51.93 -0.41 0.37 16 39 H 0.26 8.29 8.73 -40.82 -0.36 7.93 16 40 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 41 H 0.06 1.43 6.26 -51.93 -0.33 1.11 16 42 H 0.17 2.52 3.72 -88.75 -0.33 2.19 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.46 5.94 -51.93 -0.31 0.16 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -36.18 361.30 -8.43 -44.61 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.62 Total: 0.90 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.16 Total: 3.59 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.47 Total: -60.78 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.29 Total: -16.12 kcal Atomic # 14 Polarization: 26.70 SS G_CDS: -4.34 Total: 22.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.18 -8.43 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053342405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.644 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds