Wall clock time and date at job start Tue Mar 31 2020 16:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38624 * 120.32200 * 2 1 4 4 C 1.38590 * 118.49002 * 180.02562 * 3 2 1 5 5 C 1.39318 * 119.05271 * 0.02562 * 4 3 2 6 6 C 1.48170 * 119.71622 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00567 * 9.47208 * 6 5 4 8 8 N 1.34778 * 119.99613 * 189.47313 * 6 5 4 9 9 C 1.47132 * 121.06045 * 181.25891 * 8 6 5 10 10 C 1.53228 * 108.72575 * 232.32117 * 9 8 6 11 11 O 1.43131 * 109.35050 * 305.80065 * 10 9 8 12 12 C 1.42355 * 113.98956 * 59.78456 * 11 10 9 13 13 C 1.52927 * 114.30068 * 74.95569 * 12 11 10 14 14 N 1.47165 * 87.84394 * 88.27281 * 13 12 11 15 15 C 1.36940 * 135.99911 * 206.65004 * 14 13 12 16 16 H 1.07997 * 119.99963 * 7.83910 * 15 14 13 17 17 C 1.38814 * 119.99626 * 187.84005 * 15 14 13 18 18 N 1.31620 * 119.99529 * 195.18910 * 17 15 14 19 19 Si 1.86798 * 120.00433 * 15.18864 * 17 15 14 20 20 H 1.48499 * 109.46807 * 270.00053 * 19 17 15 21 21 H 1.48498 * 109.46824 * 30.00028 * 19 17 15 22 22 H 1.48497 * 109.46864 * 150.00059 * 19 17 15 23 23 C 1.47181 * 88.00515 * 26.90083 * 14 13 12 24 24 C 1.47360 * 121.06057 * 1.28903 * 8 6 5 25 25 N 1.32713 * 120.55631 * 0.25120 * 5 4 3 26 26 C 1.31523 * 121.64013 * 359.47546 * 25 5 4 27 27 C 1.50699 * 119.54404 * 180.26830 * 26 25 5 28 28 H 1.09006 * 109.47043 * 89.99944 * 1 2 3 29 29 H 1.08998 * 109.47159 * 209.99668 * 1 2 3 30 30 H 1.09000 * 109.47329 * 329.99936 * 1 2 3 31 31 H 1.08001 * 120.76138 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.47473 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.59217 * 112.54614 * 9 8 6 34 34 H 1.08999 * 109.59331 * 352.09245 * 9 8 6 35 35 H 1.08999 * 109.48679 * 185.84181 * 10 9 8 36 36 H 1.08998 * 109.49069 * 65.76472 * 10 9 8 37 37 H 1.09003 * 113.49242 * 333.53038 * 13 12 11 38 38 H 1.09001 * 113.55119 * 203.02271 * 13 12 11 39 39 H 0.97001 * 120.00360 * 354.93375 * 18 17 15 40 40 H 1.09000 * 113.48852 * 87.83886 * 23 14 13 41 41 H 1.08999 * 113.49498 * 218.34989 * 23 14 13 42 42 H 1.09002 * 109.74555 * 12.08149 * 24 8 6 43 43 H 1.09002 * 109.73975 * 251.36390 * 24 8 6 44 44 H 1.09006 * 109.47013 * 270.25236 * 27 26 25 45 45 H 1.08991 * 109.47452 * 30.25535 * 27 26 25 46 46 H 1.09002 * 109.46962 * 150.26028 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 -0.0005 5 6 4.2293 -0.0866 -0.0016 6 6 5.7096 -0.1511 -0.0028 7 8 6.3620 0.8593 0.1704 8 7 6.3325 -1.3306 -0.1959 9 6 7.8006 -1.4263 -0.1743 10 6 8.2666 -2.1289 -1.4538 11 8 7.5895 -3.3836 -1.5794 12 6 6.1719 -3.2720 -1.6471 13 6 5.6439 -2.7674 -2.9907 14 7 5.6187 -4.1673 -3.4436 15 6 5.7078 -4.8151 -4.6468 16 1 5.9549 -4.2620 -5.5409 17 6 5.4805 -6.1827 -4.7173 18 7 5.8497 -6.8570 -5.7857 19 14 4.6509 -7.0662 -3.2958 20 1 5.6820 -7.5381 -2.3369 21 1 3.7239 -6.1330 -2.6065 22 1 3.8874 -8.2296 -3.8141 23 6 5.4495 -4.5656 -2.0369 24 6 5.5650 -2.5654 -0.4361 25 7 3.5217 -1.2093 -0.0071 26 6 2.2065 -1.1960 -0.0015 27 6 1.4502 -2.4994 -0.0020 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6846 2.1420 0.0004 32 1 4.1692 2.0651 -0.0001 33 1 8.1165 -2.0027 0.6952 34 1 8.2314 -0.4261 -0.1288 35 1 9.3420 -2.2994 -1.4038 36 1 8.0368 -1.5036 -2.3164 37 1 6.3580 -2.1479 -3.5333 38 1 4.6549 -2.3135 -2.9272 39 1 6.2131 -6.3884 -6.5534 40 1 4.4082 -4.5952 -1.7160 41 1 5.9990 -5.4689 -1.7719 42 1 4.5229 -2.3178 -0.6382 43 1 5.6273 -3.2135 0.4380 44 1 1.2674 -2.8130 -1.0298 45 1 2.0377 -3.2607 0.5111 46 1 0.4982 -2.3673 0.5123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053342405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:06 Heat of formation + Delta-G solvation = 26.234621 kcal Electronic energy + Delta-G solvation = -29765.985838 eV Core-core repulsion = 25851.125774 eV Total energy + Delta-G solvation = -3914.860064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29866 -41.30091 -40.06319 -37.97123 -36.09703 -34.90709 -34.57324 -34.04737 -31.82047 -29.99338 -29.21546 -28.33905 -27.48125 -27.19104 -24.91499 -24.07857 -23.31684 -22.67308 -21.21153 -20.45617 -19.62155 -18.78883 -18.07524 -17.47480 -17.30447 -17.02592 -16.55640 -16.19915 -16.13225 -15.70124 -15.64373 -15.35565 -15.30479 -15.25990 -14.91377 -14.51303 -14.47186 -14.01111 -13.80298 -13.62655 -13.45946 -13.21710 -13.06636 -12.96585 -12.84382 -12.64769 -12.45308 -12.25044 -12.20043 -11.82445 -11.50454 -11.43498 -11.37973 -10.89576 -10.82724 -10.78739 -9.96945 -9.89548 -9.59133 -9.26042 -8.63844 -5.47558 -0.43231 0.16708 1.41854 1.53840 1.54996 1.68876 1.72123 2.52784 2.57485 2.70979 2.84458 2.92691 3.15675 3.39436 3.54325 3.70443 3.77314 3.86215 3.87128 3.92725 4.11133 4.15408 4.23591 4.37758 4.48477 4.51301 4.55310 4.58306 4.62963 4.68680 4.69092 4.73099 4.78331 4.81364 4.92331 4.94154 4.98654 5.04502 5.14667 5.19258 5.24400 5.29412 5.43499 5.77370 5.92061 6.13607 6.24079 6.60691 6.66917 6.94152 7.30969 8.24033 8.87550 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011622 B = 0.004701 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.707009 B = 5955.320835 C = 7664.139683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.105 4.105 3 C -0.075 4.075 4 C -0.118 4.118 5 C 0.051 3.949 6 C 0.570 3.430 7 O -0.567 6.567 8 N -0.593 5.593 9 C 0.079 3.921 10 C 0.047 3.953 11 O -0.367 6.367 12 C 0.076 3.924 13 C 0.104 3.896 14 N -0.644 5.644 15 C -0.294 4.294 16 H 0.041 0.959 17 C -0.081 4.081 18 N -0.966 5.966 19 Si 1.099 2.901 20 H -0.280 1.280 21 H -0.239 1.239 22 H -0.298 1.298 23 C 0.116 3.884 24 C 0.067 3.933 25 N -0.464 5.464 26 C 0.111 3.889 27 C -0.114 4.114 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.148 0.852 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.039 0.961 37 H 0.028 0.972 38 H 0.055 0.945 39 H 0.244 0.756 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.174 0.826 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.035 16.638 19.408 28.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.139 4.139 5 C -0.085 4.085 6 C 0.358 3.642 7 O -0.447 6.447 8 N -0.324 5.324 9 C -0.043 4.043 10 C -0.030 4.030 11 O -0.285 6.285 12 C 0.034 3.966 13 C -0.022 4.022 14 N -0.372 5.372 15 C -0.421 4.421 16 H 0.059 0.941 17 C -0.272 4.272 18 N -0.611 5.611 19 Si 0.923 3.077 20 H -0.207 1.207 21 H -0.163 1.163 22 H -0.226 1.226 23 C -0.009 4.009 24 C -0.056 4.056 25 N -0.177 5.177 26 C -0.029 4.029 27 C -0.171 4.171 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.194 0.806 32 H 0.166 0.834 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.190 0.810 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.541 14.650 19.794 27.196 hybrid contribution 0.912 2.387 -1.696 3.067 sum -10.628 17.036 18.098 27.032 Atomic orbital electron populations 1.21001 0.87123 1.05128 1.04046 1.21352 0.99673 0.92667 0.97018 1.21910 0.92497 1.00080 0.95504 1.22171 0.96210 0.97909 0.97598 1.20891 0.92858 0.90983 1.03775 1.18238 0.87020 0.82587 0.76320 1.90721 1.66757 1.34768 1.52434 1.48115 1.07445 1.08197 1.68601 1.22398 0.79561 1.03270 0.99115 1.23102 0.98681 0.85095 0.96076 1.87908 1.17153 1.29711 1.93773 1.22938 0.82234 0.97563 0.93843 1.22958 0.98061 0.87852 0.93312 1.45995 1.86284 1.03162 1.01776 1.19898 1.44127 0.93129 0.84979 0.94118 1.27219 1.00391 0.94091 1.05530 1.71022 1.46655 1.36710 1.06751 0.83407 0.76906 0.75126 0.72302 1.20684 1.16299 1.22593 1.22890 0.98599 0.95807 0.83559 1.23732 1.01370 0.84162 0.96287 1.67031 1.08860 1.28700 1.13084 1.21859 0.88804 0.97359 0.94874 1.20995 1.00356 0.91531 1.04215 0.89483 0.89094 0.89286 0.80643 0.83403 0.88678 0.87724 0.85209 0.94275 0.95383 0.92699 0.94656 0.89187 0.92909 0.81046 0.89550 0.89800 0.90318 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.62 71.24 0.69 -0.04 16 2 C -0.11 -1.43 5.91 -19.70 -0.12 -1.55 16 3 C -0.07 -1.04 9.85 22.45 0.22 -0.82 16 4 C -0.12 -2.40 9.63 22.61 0.22 -2.18 16 5 C 0.05 1.31 6.64 41.91 0.28 1.58 16 6 C 0.57 17.11 7.69 86.88 0.67 17.78 16 7 O -0.57 -19.05 15.83 -3.76 -0.06 -19.11 16 8 N -0.59 -17.26 3.03 -821.02 -2.49 -19.74 16 9 C 0.08 2.05 6.60 86.34 0.57 2.62 16 10 C 0.05 1.40 6.90 72.06 0.50 1.90 16 11 O -0.37 -14.09 10.55 -148.98 -1.57 -15.66 16 12 C 0.08 2.81 1.29 -10.82 -0.01 2.80 16 13 C 0.10 4.42 7.90 83.33 0.66 5.08 16 14 N -0.64 -32.98 3.63 -738.65 -2.68 -35.66 16 15 C -0.29 -17.99 11.03 84.03 0.93 -17.06 16 16 H 0.04 2.72 8.06 -2.91 -0.02 2.70 16 17 C -0.08 -4.96 5.50 84.86 0.47 -4.49 16 18 N -0.97 -64.22 13.70 21.65 0.30 -63.92 16 19 Si 1.10 53.11 25.51 68.60 1.75 54.86 16 20 H -0.28 -12.97 6.97 99.48 0.69 -12.28 16 21 H -0.24 -9.77 5.64 99.48 0.56 -9.21 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 23 C 0.12 4.86 5.04 83.42 0.42 5.28 16 24 C 0.07 1.98 5.35 86.14 0.46 2.44 16 25 N -0.46 -11.07 5.93 -173.08 -1.03 -12.10 16 26 C 0.11 2.02 6.78 42.68 0.29 2.31 16 27 C -0.11 -1.52 9.77 71.24 0.70 -0.82 16 28 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.09 0.37 5.95 -2.39 -0.01 0.35 16 30 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 31 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.15 2.89 7.67 -2.91 -0.02 2.86 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.64 7.05 -2.39 -0.02 2.62 16 35 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.04 1.26 7.30 -2.39 -0.02 1.25 16 37 H 0.03 1.26 7.36 -2.39 -0.02 1.24 16 38 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 39 H 0.24 16.40 8.73 -92.71 -0.81 15.59 16 40 H 0.09 3.26 6.95 -2.39 -0.02 3.25 16 41 H 0.05 2.32 6.26 -2.39 -0.01 2.31 16 42 H 0.17 4.92 3.72 -75.10 -0.28 4.64 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 44 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.11 0.78 5.94 -2.39 -0.01 0.76 16 Total: -1.00 -82.07 361.30 1.69 -80.38 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.54 Total: 16.13 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 6.92 Total: 14.82 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -5.89 Total: -131.42 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.63 Total: -34.78 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 1.75 Total: 54.86 kcal Total: -82.07 1.69 -80.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053342405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.617 kcal (2) G-P(sol) polarization free energy of solvation -82.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds