Wall clock time and date at job start Tue Mar 31 2020 16:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38605 * 120.32690 * 2 1 4 4 N 1.31496 * 120.90171 * 179.97438 * 3 2 1 5 5 C 1.32737 * 121.64286 * 359.97438 * 4 3 2 6 6 C 1.48172 * 119.72193 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99953 * 104.62346 * 6 5 4 8 8 N 1.34770 * 119.99957 * 284.62587 * 6 5 4 9 9 C 1.47123 * 121.05629 * 354.95123 * 8 6 5 10 10 C 1.53231 * 108.72026 * 232.25885 * 9 8 6 11 11 O 1.43102 * 109.34180 * 305.85366 * 10 9 8 12 12 C 1.42492 * 113.98592 * 59.95807 * 11 10 9 13 13 C 1.53458 * 113.77240 * 73.26608 * 12 11 10 14 14 N 1.47668 * 85.97737 * 91.26458 * 13 12 11 15 15 C 1.36936 * 134.45658 * 204.26889 * 14 13 12 16 16 H 1.08000 * 119.99757 * 174.85390 * 15 14 13 17 17 C 1.38813 * 120.00065 * 354.85754 * 15 14 13 18 18 N 1.31615 * 119.99981 * 5.00632 * 17 15 14 19 19 Si 1.86797 * 119.99891 * 185.00575 * 17 15 14 20 20 H 1.48499 * 109.47174 * 94.99638 * 19 17 15 21 21 H 1.48504 * 109.47206 * 214.99542 * 19 17 15 22 22 H 1.48498 * 109.47170 * 334.99997 * 19 17 15 23 23 C 1.47673 * 91.08358 * 24.29480 * 14 13 12 24 24 C 1.47347 * 121.05170 * 174.97548 * 8 6 5 25 25 C 1.39269 * 120.55760 * 0.27525 * 5 4 3 26 26 C 1.50702 * 120.47008 * 179.70011 * 25 5 4 27 27 C 1.38586 * 120.32613 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47030 * 90.00095 * 1 2 3 29 29 H 1.09001 * 109.46913 * 209.99914 * 1 2 3 30 30 H 1.09000 * 109.46835 * 329.99823 * 1 2 3 31 31 H 1.08004 * 119.54716 * 359.95744 * 3 2 1 32 32 H 1.09004 * 109.59641 * 112.48519 * 9 8 6 33 33 H 1.09004 * 109.59284 * 352.02955 * 9 8 6 34 34 H 1.09003 * 109.49050 * 65.81676 * 10 9 8 35 35 H 1.08998 * 109.49143 * 185.89408 * 10 9 8 36 36 H 1.09003 * 113.78956 * 205.53331 * 13 12 11 37 37 H 1.09003 * 113.79202 * 336.99349 * 13 12 11 38 38 H 0.97002 * 120.00292 * 180.02562 * 18 17 15 39 39 H 1.08998 * 113.79022 * 221.43884 * 23 14 13 40 40 H 1.08999 * 113.89939 * 89.98674 * 23 14 13 41 41 H 1.09000 * 109.74116 * 251.24148 * 24 8 6 42 42 H 1.08995 * 109.73907 * 11.95453 * 24 8 6 43 43 H 1.08995 * 109.46810 * 94.83951 * 26 25 5 44 44 H 1.08998 * 109.46931 * 214.83718 * 26 25 5 45 45 H 1.08998 * 109.47311 * 334.84075 * 26 25 5 46 46 H 1.08000 * 120.75292 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5218 1.2096 0.0005 5 6 4.2295 0.0866 0.0015 6 6 5.7098 0.1511 0.0015 7 8 6.3283 -0.0869 1.0200 8 7 6.3702 0.4738 -1.1281 9 6 5.6536 0.6588 -2.3997 10 6 6.3188 -0.2125 -3.4703 11 8 7.7170 0.0874 -3.5240 12 6 8.4070 -0.1464 -2.2994 13 6 8.6173 -1.6330 -1.9819 14 7 9.9035 -1.4963 -2.6944 15 6 10.7352 -2.3662 -3.3476 16 1 11.6035 -1.9933 -3.8705 17 6 10.4624 -3.7272 -3.3376 18 7 9.3535 -4.1720 -2.7855 19 14 11.6690 -4.9274 -4.1077 20 1 12.5740 -5.4612 -3.0584 21 1 10.9216 -6.0477 -4.7335 22 1 12.4706 -4.2273 -5.1433 23 6 9.9335 -0.0457 -2.4198 24 6 7.8328 0.6521 -1.1289 25 6 3.5923 -1.1518 -0.0036 26 6 4.3977 -2.4256 -0.0093 27 6 2.2068 -1.1962 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6648 2.1305 -0.0007 32 1 5.7029 1.7061 -2.6981 33 1 4.6125 0.3592 -2.2795 34 1 6.1818 -1.2645 -3.2199 35 1 5.8653 -0.0070 -4.4399 36 1 8.7243 -1.8446 -0.9180 37 1 7.9071 -2.2936 -2.4792 38 1 9.1630 -5.1231 -2.7781 39 1 10.2692 0.5550 -3.2651 40 1 10.4319 0.2169 -1.4866 41 1 8.0749 1.7080 -1.2494 42 1 8.2491 0.2829 -0.1917 43 1 4.5188 -2.7833 1.0132 44 1 3.8789 -3.1809 -0.5994 45 1 5.3780 -2.2337 -0.4455 46 1 1.6845 -2.1415 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053352850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:01 Heat of formation + Delta-G solvation = 25.826053 kcal Electronic energy + Delta-G solvation = -29428.680570 eV Core-core repulsion = 25513.802789 eV Total energy + Delta-G solvation = -3914.877781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07878 -39.92707 -38.43885 -36.21413 -34.46226 -33.88277 -33.83765 -32.24446 -30.04219 -28.63684 -27.68627 -27.43665 -25.93904 -25.07268 -23.80351 -23.28765 -22.17420 -21.38566 -19.81893 -18.80182 -17.71659 -17.17564 -16.81352 -16.44533 -15.84302 -15.17895 -15.06569 -14.81955 -14.65385 -14.54952 -14.20928 -14.10386 -13.58202 -13.49655 -13.39236 -13.28856 -13.25241 -12.83712 -12.70354 -12.59899 -12.50696 -12.35724 -11.95263 -11.76967 -11.33964 -11.14024 -10.87904 -10.80769 -10.65250 -10.31425 -10.15782 -9.86855 -9.84012 -9.59105 -9.53585 -9.24473 -8.97941 -8.80292 -8.25172 -6.85593 -5.75032 -3.06079 0.64389 0.99383 2.52001 2.85227 3.41276 3.42322 3.46242 3.48139 4.03880 4.07623 4.36252 4.42628 4.46383 4.60961 4.68421 4.87283 4.92578 5.04765 5.11125 5.15441 5.18750 5.25686 5.26704 5.35392 5.43848 5.49507 5.54045 5.56714 5.60710 5.74148 5.82425 5.89233 5.94126 5.98888 6.03510 6.09850 6.30501 6.36923 6.45436 6.51485 6.57469 7.01766 7.18443 7.36057 7.51592 7.61024 7.81742 7.99000 8.11121 9.05996 9.72651 10.59793 11.42497 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003308 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.825917 B = 8463.480674 C = 9083.791593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.124 4.124 3 C 0.091 3.909 4 N -0.450 5.450 5 C 0.089 3.911 6 C 0.583 3.417 7 O -0.524 6.524 8 N -0.596 5.596 9 C 0.082 3.918 10 C 0.048 3.952 11 O -0.340 6.340 12 C 0.048 3.952 13 C 0.154 3.846 14 N -0.603 5.603 15 C -0.218 4.218 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.136 3.864 24 C 0.099 3.901 25 C -0.088 4.088 26 C -0.120 4.120 27 C -0.081 4.081 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.250 9.572 3.699 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.126 4.126 3 C -0.068 4.068 4 N -0.159 5.159 5 C -0.050 4.050 6 C 0.369 3.631 7 O -0.399 6.399 8 N -0.329 5.329 9 C -0.042 4.042 10 C -0.030 4.030 11 O -0.258 6.258 12 C 0.006 3.994 13 C 0.028 3.972 14 N -0.329 5.329 15 C -0.346 4.346 16 H 0.099 0.901 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.010 3.990 24 C -0.024 4.024 25 C -0.091 4.091 26 C -0.177 4.177 27 C -0.106 4.106 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.177 0.823 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.214 9.990 3.952 21.146 hybrid contribution -0.111 -1.567 -0.108 1.574 sum -18.324 8.424 3.844 20.531 Atomic orbital electron populations 1.20751 0.89870 1.03330 1.02839 1.21109 0.97767 0.94052 0.99633 1.22676 0.89223 0.97665 0.97242 1.67620 1.08410 1.29600 1.10302 1.20883 0.94232 0.89362 1.00542 1.17830 0.85544 0.76378 0.83383 1.90808 1.67874 1.48916 1.32255 1.48022 1.08246 1.68324 1.08289 1.22375 0.96293 1.01392 0.84122 1.22873 0.82998 0.98662 0.98455 1.87933 1.18858 1.86778 1.32229 1.23739 0.93803 0.98166 0.83661 1.22638 0.88926 0.90239 0.95402 1.45757 1.23162 1.02384 1.61583 1.19006 1.04160 0.86862 1.24525 0.90073 1.24781 0.97947 0.96560 1.01113 1.69829 1.24185 1.13213 1.49532 0.86113 0.80286 0.80973 0.78507 1.21672 1.21773 1.20549 1.22496 0.89185 0.88573 0.98758 1.22349 0.78161 1.00612 1.01237 1.20899 0.94583 0.95890 0.97684 1.20865 0.99961 0.93258 1.03574 1.21370 0.92775 0.98607 0.97869 0.90569 0.91125 0.90971 0.82278 0.90349 0.90018 0.92147 0.88066 0.94667 0.90900 0.93754 0.92577 0.93147 0.90860 0.87784 0.89882 0.90425 0.90563 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.03 36.01 0.36 -0.20 16 2 C -0.12 -1.05 5.91 -104.36 -0.62 -1.67 16 3 C 0.09 0.91 10.86 -17.56 -0.19 0.72 16 4 N -0.45 -6.05 10.29 -9.80 -0.10 -6.15 16 5 C 0.09 1.30 4.53 -83.01 -0.38 0.92 16 6 C 0.58 9.99 5.72 -12.18 -0.07 9.92 16 7 O -0.52 -10.59 16.59 5.35 0.09 -10.50 16 8 N -0.60 -9.59 3.03 -173.42 -0.52 -10.11 16 9 C 0.08 1.11 6.48 -3.58 -0.02 1.08 16 10 C 0.05 0.74 6.88 37.28 0.26 0.99 16 11 O -0.34 -6.59 10.52 -35.23 -0.37 -6.96 16 12 C 0.05 0.95 1.21 -90.30 -0.11 0.84 16 13 C 0.15 3.71 6.59 -3.17 -0.02 3.69 16 14 N -0.60 -15.84 3.70 -180.28 -0.67 -16.50 16 15 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 16 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.92 -27.51 11.47 55.49 0.64 -26.87 16 19 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.14 2.86 8.33 -3.17 -0.03 2.83 16 24 C 0.10 1.68 5.80 -3.64 -0.02 1.66 16 25 C -0.09 -1.10 5.93 -104.09 -0.62 -1.72 16 26 C -0.12 -1.50 9.71 36.01 0.35 -1.15 16 27 C -0.08 -0.77 9.55 -39.31 -0.38 -1.14 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 31 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 34 H 0.06 1.02 7.20 -51.93 -0.37 0.65 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.90 7.94 -51.93 -0.41 0.48 16 37 H 0.07 1.94 6.45 -51.93 -0.33 1.61 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 1.88 6.88 -51.93 -0.36 1.53 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.80 8.13 -51.93 -0.42 0.37 16 45 H 0.08 1.17 6.91 -51.93 -0.36 0.81 16 46 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -35.23 375.54 -8.82 -44.05 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.78 Total: -0.09 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.74 Total: 10.07 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.66 Total: -59.64 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.28 Total: -17.46 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.23 -8.82 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053352850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.876 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds