Wall clock time and date at job start Tue Mar 31 2020 16:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38605 * 120.32690 * 2 1 4 4 N 1.31496 * 120.90171 * 179.97438 * 3 2 1 5 5 C 1.32737 * 121.64286 * 359.97438 * 4 3 2 6 6 C 1.48172 * 119.72193 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99953 * 104.62346 * 6 5 4 8 8 N 1.34770 * 119.99957 * 284.62587 * 6 5 4 9 9 C 1.47123 * 121.05629 * 354.95123 * 8 6 5 10 10 C 1.53231 * 108.72026 * 232.25885 * 9 8 6 11 11 O 1.43102 * 109.34180 * 305.85366 * 10 9 8 12 12 C 1.42492 * 113.98592 * 59.95807 * 11 10 9 13 13 C 1.53458 * 113.77240 * 73.26608 * 12 11 10 14 14 N 1.47668 * 85.97737 * 91.26458 * 13 12 11 15 15 C 1.36936 * 134.45658 * 204.26889 * 14 13 12 16 16 H 1.08000 * 119.99757 * 174.85390 * 15 14 13 17 17 C 1.38813 * 120.00065 * 354.85754 * 15 14 13 18 18 N 1.31615 * 119.99981 * 5.00632 * 17 15 14 19 19 Si 1.86797 * 119.99891 * 185.00575 * 17 15 14 20 20 H 1.48499 * 109.47174 * 94.99638 * 19 17 15 21 21 H 1.48504 * 109.47206 * 214.99542 * 19 17 15 22 22 H 1.48498 * 109.47170 * 334.99997 * 19 17 15 23 23 C 1.47673 * 91.08358 * 24.29480 * 14 13 12 24 24 C 1.47347 * 121.05170 * 174.97548 * 8 6 5 25 25 C 1.39269 * 120.55760 * 0.27525 * 5 4 3 26 26 C 1.50702 * 120.47008 * 179.70011 * 25 5 4 27 27 C 1.38586 * 120.32613 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47030 * 90.00095 * 1 2 3 29 29 H 1.09001 * 109.46913 * 209.99914 * 1 2 3 30 30 H 1.09000 * 109.46835 * 329.99823 * 1 2 3 31 31 H 1.08004 * 119.54716 * 359.95744 * 3 2 1 32 32 H 1.09004 * 109.59641 * 112.48519 * 9 8 6 33 33 H 1.09004 * 109.59284 * 352.02955 * 9 8 6 34 34 H 1.09003 * 109.49050 * 65.81676 * 10 9 8 35 35 H 1.08998 * 109.49143 * 185.89408 * 10 9 8 36 36 H 1.09003 * 113.78956 * 205.53331 * 13 12 11 37 37 H 1.09003 * 113.79202 * 336.99349 * 13 12 11 38 38 H 0.97002 * 120.00292 * 180.02562 * 18 17 15 39 39 H 1.08998 * 113.79022 * 221.43884 * 23 14 13 40 40 H 1.08999 * 113.89939 * 89.98674 * 23 14 13 41 41 H 1.09000 * 109.74116 * 251.24148 * 24 8 6 42 42 H 1.08995 * 109.73907 * 11.95453 * 24 8 6 43 43 H 1.08995 * 109.46810 * 94.83951 * 26 25 5 44 44 H 1.08998 * 109.46931 * 214.83718 * 26 25 5 45 45 H 1.08998 * 109.47311 * 334.84075 * 26 25 5 46 46 H 1.08000 * 120.75292 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5218 1.2096 0.0005 5 6 4.2295 0.0866 0.0015 6 6 5.7098 0.1511 0.0015 7 8 6.3283 -0.0869 1.0200 8 7 6.3702 0.4738 -1.1281 9 6 5.6536 0.6588 -2.3997 10 6 6.3188 -0.2125 -3.4703 11 8 7.7170 0.0874 -3.5240 12 6 8.4070 -0.1464 -2.2994 13 6 8.6173 -1.6330 -1.9819 14 7 9.9035 -1.4963 -2.6944 15 6 10.7352 -2.3662 -3.3476 16 1 11.6035 -1.9933 -3.8705 17 6 10.4624 -3.7272 -3.3376 18 7 9.3535 -4.1720 -2.7855 19 14 11.6690 -4.9274 -4.1077 20 1 12.5740 -5.4612 -3.0584 21 1 10.9216 -6.0477 -4.7335 22 1 12.4706 -4.2273 -5.1433 23 6 9.9335 -0.0457 -2.4198 24 6 7.8328 0.6521 -1.1289 25 6 3.5923 -1.1518 -0.0036 26 6 4.3977 -2.4256 -0.0093 27 6 2.2068 -1.1962 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6648 2.1305 -0.0007 32 1 5.7029 1.7061 -2.6981 33 1 4.6125 0.3592 -2.2795 34 1 6.1818 -1.2645 -3.2199 35 1 5.8653 -0.0070 -4.4399 36 1 8.7243 -1.8446 -0.9180 37 1 7.9071 -2.2936 -2.4792 38 1 9.1630 -5.1231 -2.7781 39 1 10.2692 0.5550 -3.2651 40 1 10.4319 0.2169 -1.4866 41 1 8.0749 1.7080 -1.2494 42 1 8.2491 0.2829 -0.1917 43 1 4.5188 -2.7833 1.0132 44 1 3.8789 -3.1809 -0.5994 45 1 5.3780 -2.2337 -0.4455 46 1 1.6845 -2.1415 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053352850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:00 Heat of formation + Delta-G solvation = 1.121796 kcal Electronic energy + Delta-G solvation = -29429.751827 eV Core-core repulsion = 25513.802789 eV Total energy + Delta-G solvation = -3915.949038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19196 -41.22652 -39.81301 -37.83247 -35.86803 -34.74786 -34.65871 -34.27421 -31.60983 -29.78428 -28.94209 -28.49535 -27.39626 -26.88817 -24.78087 -24.71783 -23.62385 -22.48783 -21.06757 -20.32183 -18.92508 -18.80436 -18.06699 -17.83898 -17.29721 -16.96354 -16.35477 -16.08649 -15.80670 -15.68768 -15.45056 -15.40463 -15.01172 -14.89867 -14.81775 -14.21039 -14.17242 -14.08815 -14.02277 -13.57125 -13.49211 -13.32569 -13.24229 -13.10563 -12.94169 -12.79108 -12.58737 -12.55669 -12.15752 -11.97242 -11.77650 -11.58476 -11.22578 -11.00283 -10.85493 -10.62985 -10.52667 -9.82468 -9.66113 -8.95813 -7.92911 -5.26552 -0.21550 0.19780 1.27429 1.43215 1.45979 1.54742 1.64052 2.44631 2.57304 2.58431 3.01937 3.22764 3.33468 3.51604 3.58031 3.68073 3.69597 3.85459 3.88208 3.96093 4.00716 4.17982 4.21555 4.31963 4.41921 4.48097 4.53101 4.56038 4.58496 4.68694 4.74296 4.78441 4.83301 4.87461 4.89554 5.02082 5.09460 5.12012 5.16427 5.19397 5.21503 5.27349 5.43745 5.64467 5.86464 6.09400 6.27038 6.73098 6.84898 6.87257 7.56875 8.50457 9.24223 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003308 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.825917 B = 8463.480674 C = 9083.791593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C 0.088 3.912 4 N -0.472 5.472 5 C 0.060 3.940 6 C 0.580 3.420 7 O -0.570 6.570 8 N -0.599 5.599 9 C 0.091 3.909 10 C 0.045 3.955 11 O -0.357 6.357 12 C 0.076 3.924 13 C 0.156 3.844 14 N -0.633 5.633 15 C -0.233 4.233 16 H 0.087 0.913 17 C -0.068 4.068 18 N -0.953 5.953 19 Si 0.981 3.019 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.265 1.265 23 C 0.136 3.864 24 C 0.106 3.894 25 C -0.100 4.100 26 C -0.115 4.115 27 C -0.079 4.079 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.192 0.808 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.136 0.864 36 H 0.011 0.989 37 H 0.039 0.961 38 H 0.248 0.752 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.037 0.963 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.816 11.105 2.810 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.072 4.072 4 N -0.182 5.182 5 C -0.077 4.077 6 C 0.367 3.633 7 O -0.448 6.448 8 N -0.331 5.331 9 C -0.031 4.031 10 C -0.032 4.032 11 O -0.275 6.275 12 C 0.034 3.966 13 C 0.030 3.970 14 N -0.360 5.360 15 C -0.361 4.361 16 H 0.105 0.895 17 C -0.261 4.261 18 N -0.602 5.602 19 Si 0.809 3.191 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.189 1.189 23 C 0.011 3.989 24 C -0.017 4.017 25 C -0.102 4.102 26 C -0.172 4.172 27 C -0.104 4.104 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.209 0.791 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.053 0.947 35 H 0.154 0.846 36 H 0.029 0.971 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.056 0.944 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -20.781 11.564 3.038 23.975 hybrid contribution 0.546 -2.002 0.163 2.081 sum -20.235 9.563 3.201 22.608 Atomic orbital electron populations 1.20865 0.86776 1.04764 1.04165 1.21532 0.99747 0.92949 0.96603 1.23305 0.88169 0.99693 0.96007 1.67559 1.10140 1.29208 1.11316 1.20490 0.92574 0.90689 1.03993 1.18376 0.87021 0.75071 0.82799 1.90759 1.69259 1.50890 1.33871 1.48146 1.07881 1.67855 1.09201 1.22440 0.96469 1.02120 0.82111 1.23115 0.81324 0.97720 1.01012 1.87891 1.21001 1.86580 1.32039 1.23242 0.93677 0.94831 0.84824 1.22443 0.87985 0.93220 0.93333 1.46138 1.23665 1.04513 1.61663 1.19435 1.04428 0.87757 1.24514 0.89499 1.25676 0.99718 0.98364 1.02318 1.70037 1.25948 1.13010 1.51211 0.85026 0.77964 0.78355 0.77801 1.21543 1.21993 1.18941 1.22714 0.90395 0.85814 1.00019 1.22167 0.79067 1.01518 0.98957 1.20918 0.95996 0.94662 0.98664 1.20793 0.98459 0.94553 1.03424 1.21713 0.91351 1.00549 0.96794 0.89029 0.89963 0.89378 0.79124 0.88097 0.88524 0.94700 0.84607 0.97126 0.94280 0.94351 0.91285 0.91017 0.87839 0.89469 0.90225 0.88197 0.94412 0.81278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.03 71.24 0.71 0.14 16 2 C -0.11 -1.43 5.91 -19.69 -0.12 -1.55 16 3 C 0.09 1.49 10.86 84.83 0.92 2.41 16 4 N -0.47 -12.07 10.29 -184.90 -1.90 -13.97 16 5 C 0.06 1.75 4.53 41.90 0.19 1.94 16 6 C 0.58 20.72 5.72 86.88 0.50 21.21 16 7 O -0.57 -24.60 16.59 -3.76 -0.06 -24.66 16 8 N -0.60 -19.62 3.03 -820.87 -2.48 -22.11 16 9 C 0.09 2.38 6.48 86.34 0.56 2.94 16 10 C 0.05 1.38 6.88 72.06 0.50 1.87 16 11 O -0.36 -13.77 10.52 -148.98 -1.57 -15.34 16 12 C 0.08 3.06 1.21 -10.49 -0.01 3.05 16 13 C 0.16 8.03 6.59 86.30 0.57 8.60 16 14 N -0.63 -34.36 3.70 -729.16 -2.70 -37.05 16 15 C -0.23 -13.64 10.70 84.03 0.90 -12.74 16 16 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 18 N -0.95 -59.57 11.47 21.65 0.25 -59.32 16 19 Si 0.98 47.10 29.56 68.60 2.03 49.13 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.14 5.72 8.33 86.30 0.72 6.44 16 24 C 0.11 3.66 5.80 86.18 0.50 4.16 16 25 C -0.10 -2.46 5.93 -19.52 -0.12 -2.58 16 26 C -0.12 -3.05 9.71 71.24 0.69 -2.36 16 27 C -0.08 -1.30 9.55 22.45 0.21 -1.09 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.32 8.09 -2.39 -0.02 0.30 16 30 H 0.09 0.26 8.09 -2.39 -0.02 0.24 16 31 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.10 2.28 6.44 -2.38 -0.02 2.26 16 34 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 35 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.01 0.61 7.94 -2.39 -0.02 0.59 16 37 H 0.04 2.24 6.45 -2.39 -0.02 2.23 16 38 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.07 2.74 8.09 -2.39 -0.02 2.72 16 41 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 3.33 6.88 -2.39 -0.02 3.31 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.10 2.08 8.13 -2.39 -0.02 2.06 16 45 H 0.04 1.27 6.91 -2.39 -0.02 1.26 16 46 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -81.62 375.54 1.74 -79.88 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.99 Total: 14.56 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 7.19 Total: 28.88 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -6.84 Total: -132.45 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.63 Total: -40.00 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -81.62 1.74 -79.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053352850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.998 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds