Wall clock time and date at job start Tue Mar 31 2020 16:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38343 * 120.34915 * 2 1 4 4 N 1.31931 * 121.07839 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87627 * 359.67536 * 4 3 2 6 6 C 1.39516 * 120.56959 * 0.58969 * 5 4 3 7 7 C 1.47837 * 120.55911 * 179.72504 * 6 5 4 8 8 O 1.21562 * 119.99788 * 179.71514 * 7 6 5 9 9 N 1.34768 * 120.00250 * 359.72606 * 7 6 5 10 10 C 1.46503 * 120.00181 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47059 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.26316 * 304.38116 * 11 10 9 13 13 C 1.55015 * 110.37984 * 182.25827 * 11 10 9 14 14 C 1.55482 * 101.04427 * 205.00183 * 13 11 10 15 15 C 1.53662 * 101.96712 * 33.48573 * 14 13 11 16 16 C 1.52695 * 115.26978 * 206.90003 * 15 14 13 17 17 N 1.47210 * 87.79939 * 219.25688 * 16 15 14 18 18 C 1.36939 * 135.97108 * 206.45950 * 17 16 15 19 19 H 1.07995 * 120.00363 * 7.80729 * 18 17 16 20 20 C 1.38811 * 119.99913 * 187.80230 * 18 17 16 21 21 N 1.31612 * 120.00119 * 195.32303 * 20 18 17 22 22 Si 1.86806 * 119.99886 * 15.32225 * 20 18 17 23 23 H 1.48504 * 109.47043 * 269.99787 * 22 20 18 24 24 H 1.48501 * 109.47117 * 29.99822 * 22 20 18 25 25 H 1.48499 * 109.46957 * 149.99902 * 22 20 18 26 26 C 1.47207 * 88.05444 * 26.71373 * 17 16 15 27 27 O 1.42389 * 108.53488 * 339.13455 * 15 14 13 28 28 C 1.38355 * 120.34351 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47215 * 269.97781 * 1 2 3 30 30 H 1.09005 * 109.47152 * 29.97678 * 1 2 3 31 31 H 1.08995 * 109.47504 * 149.97491 * 1 2 3 32 32 H 1.08000 * 119.46337 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.71310 * 180.29315 * 5 4 3 34 34 H 0.96998 * 120.00199 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47314 * 59.99634 * 10 9 7 36 36 H 1.09000 * 109.47118 * 299.99293 * 10 9 7 37 37 H 1.08999 * 111.11045 * 322.94552 * 13 11 10 38 38 H 1.09008 * 111.10651 * 87.02341 * 13 11 10 39 39 H 1.09005 * 110.93642 * 275.32224 * 14 13 11 40 40 H 1.08997 * 110.93360 * 151.65082 * 14 13 11 41 41 H 1.09005 * 113.49726 * 104.51940 * 16 15 14 42 42 H 1.09004 * 113.50081 * 333.99385 * 16 15 14 43 43 H 0.97001 * 119.99985 * 354.91000 * 21 20 18 44 44 H 1.09000 * 113.49964 * 88.02175 * 26 17 16 45 45 H 1.08996 * 113.50151 * 218.56272 * 26 17 16 46 46 H 1.08000 * 120.86098 * 359.95559 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1938 0.0000 4 7 3.5252 1.2106 -0.0005 5 6 4.2348 0.1013 0.0053 6 6 3.6053 -1.1438 -0.0001 7 6 4.4022 -2.3890 0.0003 8 8 3.8431 -3.4684 0.0008 9 7 5.7485 -2.3275 0.0004 10 6 6.5382 -3.5615 0.0014 11 6 8.0281 -3.2135 0.0005 12 1 8.2641 -2.5661 -0.8441 13 6 8.8840 -4.5047 -0.0557 14 6 10.2075 -4.0134 0.5959 15 6 9.6964 -2.9930 1.6248 16 6 10.6805 -1.8826 1.9859 17 7 10.2182 -2.0035 3.3783 18 6 10.1481 -1.1768 4.4677 19 1 10.3738 -0.1258 4.3635 20 6 9.7869 -1.6896 5.7061 21 7 9.4263 -0.8758 6.6756 22 14 9.8126 -3.5348 5.9964 23 1 8.4876 -4.1089 5.6496 24 1 10.8592 -4.1553 5.1450 25 1 10.1113 -3.8068 7.4254 26 6 9.8702 -3.4041 3.0884 27 8 8.3921 -2.5736 1.2371 28 6 2.2059 -1.1940 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6629 2.1274 0.0004 33 1 5.3135 0.1558 0.0095 34 1 6.1947 -1.4662 -0.0002 35 1 6.3012 -4.1452 -0.8882 36 1 6.3012 -4.1437 0.8918 37 1 8.4299 -5.3026 0.5318 38 1 9.0473 -4.8228 -1.0854 39 1 10.8503 -3.5334 -0.1422 40 1 10.7279 -4.8351 1.0878 41 1 10.4391 -0.9226 1.5295 42 1 11.7243 -2.1652 1.8484 43 1 9.4834 0.0843 6.5494 44 1 10.6944 -4.0991 3.2496 45 1 8.9445 -3.7292 3.5630 46 1 1.6857 -2.1405 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053586173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:32 Heat of formation + Delta-G solvation = 19.696428 kcal Electronic energy + Delta-G solvation = -28071.562978 eV Core-core repulsion = 24156.419396 eV Total energy + Delta-G solvation = -3915.143581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.88846 -40.23087 -39.12862 -36.91152 -34.78901 -33.89378 -32.55364 -32.33922 -31.98614 -29.62099 -27.67860 -27.09837 -25.41669 -24.92559 -23.39068 -22.99136 -21.59645 -21.10171 -20.42970 -19.31854 -18.04398 -17.47962 -17.17112 -16.86428 -16.67341 -15.68612 -15.59993 -15.32507 -14.79563 -14.48555 -14.36089 -13.97065 -13.78127 -13.68408 -13.41177 -13.33706 -13.15719 -13.08744 -13.04733 -12.93676 -12.54387 -12.24854 -12.18760 -11.67667 -11.63986 -11.37010 -10.82436 -10.71731 -10.40321 -10.32550 -10.18348 -10.07216 -9.84296 -9.65900 -9.35164 -9.22500 -9.14559 -8.83919 -8.66854 -7.13772 -6.25544 -3.16135 0.38296 0.90710 2.67183 2.92217 3.44316 3.49096 3.58740 3.64458 3.74182 4.02926 4.37277 4.44083 4.49840 4.56371 4.63022 4.64037 4.66206 4.78052 4.82039 4.89170 4.94946 5.08591 5.17452 5.21769 5.32065 5.34708 5.42964 5.48345 5.52490 5.59350 5.69579 5.74283 5.84528 5.88078 5.91378 6.04489 6.18303 6.21704 6.25922 6.28945 6.34827 6.43892 6.52042 7.17001 7.30682 7.46279 7.58091 8.00709 8.28754 9.02553 9.56279 10.41966 11.24846 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.003145 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.756941 B = 8901.703046 C =10154.061443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.148 4.148 3 C 0.120 3.880 4 N -0.482 5.482 5 C 0.132 3.868 6 C -0.181 4.181 7 C 0.564 3.436 8 O -0.539 6.539 9 N -0.714 5.714 10 C 0.124 3.876 11 C 0.061 3.939 12 H 0.077 0.923 13 C -0.145 4.145 14 C -0.137 4.137 15 C 0.071 3.929 16 C 0.113 3.887 17 N -0.617 5.617 18 C -0.301 4.301 19 H 0.081 0.919 20 C -0.024 4.024 21 N -0.933 5.933 22 Si 1.062 2.938 23 H -0.293 1.293 24 H -0.283 1.283 25 H -0.295 1.295 26 C 0.097 3.903 27 O -0.331 6.331 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.046 0.954 43 H 0.261 0.739 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 -3.162 -20.424 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.150 4.150 3 C -0.037 4.037 4 N -0.189 5.189 5 C -0.026 4.026 6 C -0.186 4.186 7 C 0.351 3.649 8 O -0.418 6.418 9 N -0.366 5.366 10 C 0.000 4.000 11 C 0.003 3.997 12 H 0.094 0.906 13 C -0.183 4.183 14 C -0.176 4.176 15 C 0.030 3.970 16 C -0.014 4.014 17 N -0.344 5.344 18 C -0.427 4.427 19 H 0.099 0.901 20 C -0.223 4.223 21 N -0.575 5.575 22 Si 0.894 3.106 23 H -0.221 1.221 24 H -0.209 1.209 25 H -0.223 1.223 26 C -0.029 4.029 27 O -0.250 6.250 28 C -0.046 4.046 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.242 0.758 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.676 -3.979 -18.959 22.619 hybrid contribution 0.487 0.734 -1.059 1.378 sum -11.189 -3.244 -20.019 23.162 Atomic orbital electron populations 1.20735 0.89566 1.03358 1.03008 1.20947 0.98058 0.93752 1.02214 1.22939 0.89952 0.97731 0.93071 1.67723 1.08031 1.30924 1.12229 1.23030 1.00463 0.86796 0.92359 1.20992 0.95182 0.94781 1.07609 1.17995 0.82095 0.88397 0.76456 1.90772 1.71175 1.29642 1.50162 1.45796 1.05692 1.10575 1.74520 1.21601 0.88596 0.86571 1.03202 1.23315 0.93165 0.94218 0.89015 0.90559 1.23216 0.95722 0.97349 1.02051 1.22907 0.97275 0.99139 0.98262 1.23183 0.84048 0.95197 0.94617 1.22662 0.94795 0.96760 0.87168 1.46045 1.72106 1.07579 1.08696 1.20089 1.46235 0.90454 0.85920 0.90133 1.25738 0.98311 1.06928 0.91306 1.70891 1.47081 1.04240 1.35316 0.83781 0.76340 0.75388 0.75132 1.22101 1.20937 1.22284 1.23032 0.98742 0.89570 0.91520 1.88447 1.31789 1.66887 1.37879 1.21624 0.92410 0.99024 0.91494 0.90547 0.90918 0.91043 0.82253 0.82248 0.75843 0.90022 0.90239 0.89879 0.89860 0.90246 0.89629 0.93168 0.93679 0.92893 0.92751 0.92479 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.03 36.01 0.36 -0.27 16 2 C -0.15 -1.33 5.89 -104.54 -0.62 -1.94 16 3 C 0.12 1.16 10.85 -17.47 -0.19 0.97 16 4 N -0.48 -5.81 10.35 -12.91 -0.13 -5.94 16 5 C 0.13 1.54 10.71 -17.13 -0.18 1.36 16 6 C -0.18 -2.20 5.89 -104.82 -0.62 -2.82 16 7 C 0.56 7.76 7.78 -12.34 -0.10 7.67 16 8 O -0.54 -8.90 16.42 5.31 0.09 -8.81 16 9 N -0.71 -8.81 5.49 -61.25 -0.34 -9.15 16 10 C 0.12 1.48 5.39 -4.04 -0.02 1.46 16 11 C 0.06 0.72 3.48 -25.66 -0.09 0.63 16 12 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 13 C -0.15 -1.46 6.58 -24.35 -0.16 -1.62 16 14 C -0.14 -1.64 6.39 -25.07 -0.16 -1.80 16 15 C 0.07 1.22 1.75 -90.43 -0.16 1.06 16 16 C 0.11 2.23 8.20 -8.08 -0.07 2.16 16 17 N -0.62 -15.60 3.63 -184.60 -0.67 -16.27 16 18 C -0.30 -8.93 11.03 -15.06 -0.17 -9.10 16 19 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 20 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16 21 N -0.93 -30.26 13.70 55.49 0.76 -29.50 16 22 Si 1.06 27.38 25.51 -169.99 -4.34 23.04 16 23 H -0.29 -7.38 6.97 56.52 0.39 -6.99 16 24 H -0.28 -6.64 5.65 56.52 0.32 -6.32 16 25 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 26 C 0.10 2.08 5.09 -7.92 -0.04 2.04 16 27 O -0.33 -5.70 10.84 -35.23 -0.38 -6.08 16 28 C -0.02 -0.21 9.39 -38.87 -0.37 -0.57 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.16 1.60 6.42 -52.48 -0.34 1.26 16 34 H 0.41 4.47 6.54 -40.82 -0.27 4.21 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 38 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 40 H 0.09 0.96 7.81 -51.93 -0.41 0.55 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 43 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 44 H 0.06 1.10 6.79 -51.93 -0.35 0.75 16 45 H 0.06 1.32 6.28 -51.93 -0.33 0.99 16 46 H 0.15 1.50 7.74 -52.49 -0.41 1.09 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -37.55 375.40 -8.84 -46.39 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.82 Total: 2.27 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.66 Total: -1.60 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.38 Total: -60.86 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.29 Total: -14.89 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -4.34 Total: 23.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.55 -8.84 -46.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.085 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds