Wall clock time and date at job start Tue Mar 31 2020 16:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38343 * 120.34915 * 2 1 4 4 N 1.31931 * 121.07839 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.87627 * 359.67536 * 4 3 2 6 6 C 1.39516 * 120.56959 * 0.58969 * 5 4 3 7 7 C 1.47837 * 120.55911 * 179.72504 * 6 5 4 8 8 O 1.21562 * 119.99788 * 179.71514 * 7 6 5 9 9 N 1.34768 * 120.00250 * 359.72606 * 7 6 5 10 10 C 1.46503 * 120.00181 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47059 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.26316 * 304.38116 * 11 10 9 13 13 C 1.55015 * 110.37984 * 182.25827 * 11 10 9 14 14 C 1.55482 * 101.04427 * 205.00183 * 13 11 10 15 15 C 1.53662 * 101.96712 * 33.48573 * 14 13 11 16 16 C 1.52695 * 115.26978 * 206.90003 * 15 14 13 17 17 N 1.47210 * 87.79939 * 219.25688 * 16 15 14 18 18 C 1.36939 * 135.97108 * 206.45950 * 17 16 15 19 19 H 1.07995 * 120.00363 * 7.80729 * 18 17 16 20 20 C 1.38811 * 119.99913 * 187.80230 * 18 17 16 21 21 N 1.31612 * 120.00119 * 195.32303 * 20 18 17 22 22 Si 1.86806 * 119.99886 * 15.32225 * 20 18 17 23 23 H 1.48504 * 109.47043 * 269.99787 * 22 20 18 24 24 H 1.48501 * 109.47117 * 29.99822 * 22 20 18 25 25 H 1.48499 * 109.46957 * 149.99902 * 22 20 18 26 26 C 1.47207 * 88.05444 * 26.71373 * 17 16 15 27 27 O 1.42389 * 108.53488 * 339.13455 * 15 14 13 28 28 C 1.38355 * 120.34351 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47215 * 269.97781 * 1 2 3 30 30 H 1.09005 * 109.47152 * 29.97678 * 1 2 3 31 31 H 1.08995 * 109.47504 * 149.97491 * 1 2 3 32 32 H 1.08000 * 119.46337 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.71310 * 180.29315 * 5 4 3 34 34 H 0.96998 * 120.00199 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47314 * 59.99634 * 10 9 7 36 36 H 1.09000 * 109.47118 * 299.99293 * 10 9 7 37 37 H 1.08999 * 111.11045 * 322.94552 * 13 11 10 38 38 H 1.09008 * 111.10651 * 87.02341 * 13 11 10 39 39 H 1.09005 * 110.93642 * 275.32224 * 14 13 11 40 40 H 1.08997 * 110.93360 * 151.65082 * 14 13 11 41 41 H 1.09005 * 113.49726 * 104.51940 * 16 15 14 42 42 H 1.09004 * 113.50081 * 333.99385 * 16 15 14 43 43 H 0.97001 * 119.99985 * 354.91000 * 21 20 18 44 44 H 1.09000 * 113.49964 * 88.02175 * 26 17 16 45 45 H 1.08996 * 113.50151 * 218.56272 * 26 17 16 46 46 H 1.08000 * 120.86098 * 359.95559 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1938 0.0000 4 7 3.5252 1.2106 -0.0005 5 6 4.2348 0.1013 0.0053 6 6 3.6053 -1.1438 -0.0001 7 6 4.4022 -2.3890 0.0003 8 8 3.8431 -3.4684 0.0008 9 7 5.7485 -2.3275 0.0004 10 6 6.5382 -3.5615 0.0014 11 6 8.0281 -3.2135 0.0005 12 1 8.2641 -2.5661 -0.8441 13 6 8.8840 -4.5047 -0.0557 14 6 10.2075 -4.0134 0.5959 15 6 9.6964 -2.9930 1.6248 16 6 10.6805 -1.8826 1.9859 17 7 10.2182 -2.0035 3.3783 18 6 10.1481 -1.1768 4.4677 19 1 10.3738 -0.1258 4.3635 20 6 9.7869 -1.6896 5.7061 21 7 9.4263 -0.8758 6.6756 22 14 9.8126 -3.5348 5.9964 23 1 8.4876 -4.1089 5.6496 24 1 10.8592 -4.1553 5.1450 25 1 10.1113 -3.8068 7.4254 26 6 9.8702 -3.4041 3.0884 27 8 8.3921 -2.5736 1.2371 28 6 2.2059 -1.1940 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6629 2.1274 0.0004 33 1 5.3135 0.1558 0.0095 34 1 6.1947 -1.4662 -0.0002 35 1 6.3012 -4.1452 -0.8882 36 1 6.3012 -4.1437 0.8918 37 1 8.4299 -5.3026 0.5318 38 1 9.0473 -4.8228 -1.0854 39 1 10.8503 -3.5334 -0.1422 40 1 10.7279 -4.8351 1.0878 41 1 10.4391 -0.9226 1.5295 42 1 11.7243 -2.1652 1.8484 43 1 9.4834 0.0843 6.5494 44 1 10.6944 -4.0991 3.2496 45 1 8.9445 -3.7292 3.5630 46 1 1.6857 -2.1405 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053586173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:31 Heat of formation + Delta-G solvation = -9.164755 kcal Electronic energy + Delta-G solvation = -28072.814492 eV Core-core repulsion = 24156.419396 eV Total energy + Delta-G solvation = -3916.395096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82220 -41.46915 -40.16087 -38.33946 -35.91196 -34.68545 -34.47276 -33.44083 -33.04199 -30.94579 -28.83831 -28.19276 -27.05534 -26.01759 -24.52612 -23.82438 -22.74629 -22.55315 -21.40070 -20.80707 -19.56135 -18.96402 -18.09202 -17.81691 -17.62430 -17.27889 -16.58205 -16.39777 -16.13087 -15.68870 -15.60376 -15.31998 -15.16337 -15.07532 -14.76652 -14.41956 -14.29132 -14.16788 -13.79657 -13.61435 -13.50345 -13.39871 -13.26692 -12.85666 -12.67903 -12.61077 -12.40949 -12.25512 -11.83452 -11.70888 -11.43778 -11.37506 -11.30624 -10.95512 -10.85535 -10.55096 -10.29707 -10.26012 -9.99473 -9.24909 -8.64175 -5.45863 -0.48025 0.08854 1.34729 1.46325 1.61862 1.67935 1.96800 2.52383 2.60966 2.72154 3.04638 3.15014 3.22762 3.49142 3.57556 3.61076 3.72167 3.74158 3.79172 3.86433 3.90900 4.13559 4.14094 4.38618 4.44563 4.47314 4.54975 4.59752 4.66901 4.71836 4.75202 4.80535 4.82819 4.90184 4.93416 4.95729 5.04693 5.12243 5.13637 5.18566 5.23303 5.24505 5.32681 5.53866 5.93946 6.26367 6.30627 6.68791 6.75334 6.97897 7.33441 8.28372 8.87970 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011583 B = 0.003145 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.756941 B = 8901.703046 C =10154.061443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.506 5.506 5 C 0.122 3.878 6 C -0.196 4.196 7 C 0.562 3.438 8 O -0.574 6.574 9 N -0.711 5.711 10 C 0.124 3.876 11 C 0.058 3.942 12 H 0.101 0.899 13 C -0.136 4.136 14 C -0.127 4.127 15 C 0.089 3.911 16 C 0.109 3.891 17 N -0.655 5.655 18 C -0.287 4.287 19 H 0.045 0.955 20 C -0.088 4.088 21 N -0.971 5.971 22 Si 1.103 2.897 23 H -0.289 1.289 24 H -0.244 1.244 25 H -0.300 1.300 26 C 0.086 3.914 27 O -0.368 6.368 28 C -0.032 4.032 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.191 0.809 33 H 0.167 0.833 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.245 0.755 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 -4.960 -23.489 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.040 4.040 4 N -0.214 5.214 5 C -0.036 4.036 6 C -0.201 4.201 7 C 0.349 3.651 8 O -0.455 6.455 9 N -0.361 5.361 10 C 0.000 4.000 11 C 0.001 3.999 12 H 0.119 0.881 13 C -0.174 4.174 14 C -0.165 4.165 15 C 0.048 3.952 16 C -0.016 4.016 17 N -0.384 5.384 18 C -0.415 4.415 19 H 0.063 0.937 20 C -0.279 4.279 21 N -0.617 5.617 22 Si 0.928 3.072 23 H -0.216 1.216 24 H -0.168 1.168 25 H -0.228 1.228 26 C -0.039 4.039 27 O -0.287 6.287 28 C -0.058 4.058 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.208 0.792 33 H 0.184 0.816 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.654 -5.777 -22.105 25.648 hybrid contribution 0.420 1.436 -0.223 1.513 sum -11.234 -4.341 -22.328 25.369 Atomic orbital electron populations 1.20830 0.86955 1.04821 1.03866 1.21285 0.99802 0.92698 1.00292 1.23520 0.89387 0.99304 0.91793 1.67750 1.09409 1.31061 1.13160 1.23135 1.00979 0.86709 0.92734 1.20965 0.95781 0.94233 1.09139 1.18265 0.82506 0.88482 0.75805 1.90740 1.71814 1.30829 1.52072 1.45847 1.05463 1.11168 1.73666 1.21670 0.88928 0.86307 1.03052 1.23607 0.92974 0.95704 0.87593 0.88086 1.23262 0.93856 0.95985 1.04257 1.22925 0.98448 0.97962 0.97196 1.22871 0.83826 0.94760 0.93741 1.22957 0.97031 0.97822 0.83793 1.46147 1.73478 1.09383 1.09348 1.19943 1.43900 0.89913 0.87739 0.93687 1.27090 0.98757 1.10651 0.91445 1.71006 1.50450 1.03491 1.36766 0.83321 0.77669 0.70893 0.75331 1.21612 1.16835 1.22821 1.23346 0.98300 0.87686 0.94560 1.88421 1.31942 1.67925 1.40433 1.21831 0.92140 1.00025 0.91832 0.89799 0.88773 0.90336 0.79198 0.81579 0.75221 0.87799 0.92694 0.90019 0.85939 0.87575 0.88136 0.93995 0.90756 0.94599 0.90495 0.94704 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.03 71.24 0.71 -0.27 16 2 C -0.14 -2.31 5.89 -19.81 -0.12 -2.43 16 3 C 0.12 2.09 10.85 84.70 0.92 3.00 16 4 N -0.51 -12.01 10.35 -194.76 -2.01 -14.03 16 5 C 0.12 2.90 10.71 85.02 0.91 3.81 16 6 C -0.20 -4.85 5.89 -20.00 -0.12 -4.97 16 7 C 0.56 15.70 7.78 86.79 0.68 16.37 16 8 O -0.57 -19.25 16.42 -3.91 -0.06 -19.32 16 9 N -0.71 -17.32 5.49 -465.96 -2.56 -19.88 16 10 C 0.12 2.78 5.39 86.38 0.47 3.25 16 11 C 0.06 1.21 3.48 31.29 0.11 1.32 16 12 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 13 C -0.14 -2.08 6.58 32.14 0.21 -1.87 16 14 C -0.13 -2.39 6.39 31.67 0.20 -2.19 16 15 C 0.09 2.84 1.75 -10.67 -0.02 2.82 16 16 C 0.11 4.12 8.20 83.38 0.68 4.80 16 17 N -0.66 -33.01 3.63 -739.02 -2.68 -35.69 16 18 C -0.29 -17.64 11.03 84.03 0.93 -16.71 16 19 H 0.05 2.99 8.06 -2.91 -0.02 2.96 16 20 C -0.09 -5.54 5.50 84.86 0.47 -5.07 16 21 N -0.97 -65.90 13.70 21.65 0.30 -65.60 16 22 Si 1.10 55.84 25.51 68.60 1.75 57.59 16 23 H -0.29 -14.25 6.97 99.48 0.69 -13.56 16 24 H -0.24 -10.65 5.65 99.48 0.56 -10.08 16 25 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 26 C 0.09 3.52 5.09 83.48 0.43 3.94 16 27 O -0.37 -12.11 10.84 -148.98 -1.62 -13.72 16 28 C -0.03 -0.69 9.39 22.73 0.21 -0.48 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 0.49 8.09 -2.38 -0.02 0.47 16 31 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 32 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 3.44 6.42 -2.91 -0.02 3.42 16 34 H 0.41 9.00 6.54 -92.71 -0.61 8.39 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 38 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.11 1.52 8.13 -2.38 -0.02 1.50 16 40 H 0.10 1.67 7.81 -2.39 -0.02 1.66 16 41 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.07 2.42 8.13 -2.38 -0.02 2.40 16 43 H 0.24 16.69 8.73 -92.71 -0.81 15.88 16 44 H 0.08 2.81 6.79 -2.39 -0.02 2.80 16 45 H 0.03 1.58 6.28 -2.39 -0.02 1.56 16 46 H 0.15 3.05 7.74 -2.91 -0.02 3.03 16 Total: -1.00 -87.23 375.40 -0.02 -87.25 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.19 Total: 18.07 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.67 Total: 5.33 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -6.96 Total: -135.21 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.68 Total: -33.04 kcal Atomic # 14 Polarization: 55.84 SS G_CDS: 1.75 Total: 57.59 kcal Total: -87.23 -0.02 -87.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.088 kcal (2) G-P(sol) polarization free energy of solvation -87.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds