Wall clock time and date at job start Tue Mar 31 2020 16:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 120.34658 * 2 1 4 4 N 1.31922 * 121.07708 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.88146 * 0.02562 * 4 3 2 6 6 C 1.39520 * 120.56641 * 359.97438 * 5 4 3 7 7 C 1.47841 * 120.56061 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00397 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99800 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00006 * 180.27700 * 9 7 6 11 11 C 1.53000 * 109.47384 * 179.72704 * 10 9 7 12 12 H 1.08995 * 110.52675 * 57.18981 * 11 10 9 13 13 C 1.55054 * 110.59347 * 179.97438 * 11 10 9 14 14 C 1.54990 * 102.12331 * 155.12709 * 13 11 10 15 15 C 1.53431 * 103.85082 * 339.14466 * 14 13 11 16 16 C 1.53221 * 115.01836 * 227.72032 * 15 14 13 17 17 N 1.47722 * 85.89690 * 220.50505 * 16 15 14 18 18 C 1.36939 * 134.43087 * 204.16122 * 17 16 15 19 19 H 1.08000 * 120.00089 * 173.43131 * 18 17 16 20 20 C 1.38806 * 120.00320 * 353.43640 * 18 17 16 21 21 N 1.31627 * 119.99762 * 5.07706 * 20 18 17 22 22 Si 1.86796 * 120.00357 * 185.07536 * 20 18 17 23 23 H 1.48506 * 109.47154 * 94.98624 * 22 20 18 24 24 H 1.48504 * 109.47278 * 214.98592 * 22 20 18 25 25 H 1.48498 * 109.47091 * 334.98769 * 22 20 18 26 26 C 1.47713 * 91.13679 * 24.12102 * 17 16 15 27 27 O 1.42962 * 108.17406 * 358.31658 * 15 14 13 28 28 C 1.38349 * 120.34889 * 180.26296 * 2 1 3 29 29 H 1.09001 * 109.46800 * 89.99514 * 1 2 3 30 30 H 1.09002 * 109.46801 * 209.99816 * 1 2 3 31 31 H 1.09000 * 109.46856 * 329.99739 * 1 2 3 32 32 H 1.08002 * 119.45903 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.71572 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00041 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.46808 * 299.72273 * 10 9 7 36 36 H 1.08997 * 109.47175 * 59.72196 * 10 9 7 37 37 H 1.08991 * 110.87256 * 273.29146 * 13 11 10 38 38 H 1.09006 * 110.86736 * 36.77027 * 13 11 10 39 39 H 1.09013 * 110.54611 * 97.73422 * 14 13 11 40 40 H 1.08994 * 110.55506 * 220.40324 * 14 13 11 41 41 H 1.08999 * 113.80535 * 334.74538 * 16 15 14 42 42 H 1.08998 * 113.80496 * 106.26255 * 16 15 14 43 43 H 0.97004 * 119.99768 * 180.02562 * 21 20 18 44 44 H 1.09005 * 113.80671 * 221.64500 * 26 17 16 45 45 H 1.08997 * 113.92006 * 90.13771 * 26 17 16 46 46 H 1.08007 * 120.86124 * 0.04186 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 0.0005 5 6 4.2350 0.1015 0.0005 6 6 3.6054 -1.1436 0.0006 7 6 4.4023 -2.3888 0.0011 8 8 3.8434 -3.4682 0.0007 9 7 5.7487 -2.3272 0.0022 10 6 6.5384 -3.5611 -0.0033 11 6 8.0283 -3.2131 -0.0077 12 1 8.2776 -2.5895 0.8508 13 6 8.8895 -4.5025 -0.0130 14 6 10.2114 -4.0084 -0.6538 15 6 9.8017 -2.7350 -1.4053 16 6 10.3128 -2.6404 -2.8467 17 7 10.5657 -1.2153 -2.5511 18 6 10.6700 -0.0821 -3.3128 19 1 10.7593 0.8828 -2.8360 20 6 10.6609 -0.1735 -4.6979 21 7 10.4519 -1.3358 -5.2793 22 14 10.9451 1.3527 -5.7366 23 1 12.3810 1.4401 -6.1055 24 1 10.1212 1.2729 -6.9696 25 1 10.5592 2.5586 -4.9606 26 6 10.6600 -1.5015 -1.1050 27 8 8.3930 -2.5545 -1.2420 28 6 2.2061 -1.1939 -0.0055 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6629 2.1275 0.0004 33 1 5.3136 0.1561 0.0005 34 1 6.1948 -1.4659 0.0029 35 1 6.3046 -4.1461 0.8862 36 1 6.2984 -4.1421 -0.8938 37 1 9.0600 -4.8598 1.0025 38 1 8.4247 -5.2774 -0.6226 39 1 10.9474 -3.7781 0.1166 40 1 10.6035 -4.7540 -1.3454 41 1 11.2181 -3.2187 -3.0313 42 1 9.5409 -2.8034 -3.5987 43 1 10.4459 -1.3997 -6.2472 44 1 10.1631 -0.7622 -0.4768 45 1 11.6684 -1.7392 -0.7664 46 1 1.6859 -2.1404 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053586174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:36 Heat of formation + Delta-G solvation = 12.649026 kcal Electronic energy + Delta-G solvation = -27952.931965 eV Core-core repulsion = 24037.482785 eV Total energy + Delta-G solvation = -3915.449180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85053 -39.94023 -39.04958 -36.46631 -34.68082 -33.86094 -32.49985 -32.08317 -31.76948 -29.36695 -27.63081 -26.96472 -25.03587 -24.87263 -23.45250 -22.97229 -21.55113 -21.22335 -20.34464 -19.04777 -17.98627 -17.15240 -16.82018 -16.71864 -16.43152 -15.56736 -15.25143 -15.09459 -14.66000 -14.46218 -14.34445 -14.06177 -13.72869 -13.54107 -13.34043 -13.24376 -13.12408 -12.97060 -12.91994 -12.46522 -12.32252 -12.22475 -11.65948 -11.41053 -11.25364 -11.11444 -11.02180 -10.81516 -10.43574 -10.35789 -10.08376 -10.05074 -9.65935 -9.62571 -9.56110 -9.31970 -9.10056 -8.89827 -8.77338 -6.83917 -5.74193 -3.04920 0.40821 0.92975 2.70429 2.97663 3.42013 3.46925 3.49340 3.61464 3.95544 4.08158 4.39503 4.47951 4.52307 4.60110 4.65765 4.69149 4.81861 4.86285 4.99962 5.11872 5.17461 5.22177 5.24388 5.35836 5.37190 5.51793 5.52263 5.58986 5.62184 5.66981 5.77086 5.87752 5.90759 5.98163 6.12700 6.25691 6.26922 6.32946 6.34913 6.56398 6.66997 6.92762 7.22911 7.35779 7.52308 7.61145 7.72093 8.01477 8.04597 9.07595 9.74235 10.62627 11.43779 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003196 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.453435 B = 8758.728393 C =10879.876694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.149 4.149 3 C 0.120 3.880 4 N -0.481 5.481 5 C 0.133 3.867 6 C -0.181 4.181 7 C 0.564 3.436 8 O -0.541 6.541 9 N -0.714 5.714 10 C 0.130 3.870 11 C 0.056 3.944 12 H 0.073 0.927 13 C -0.143 4.143 14 C -0.139 4.139 15 C 0.057 3.943 16 C 0.175 3.825 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.105 3.895 27 O -0.330 6.330 28 C -0.019 4.019 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.041 0.959 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.385 -2.964 15.229 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.151 4.151 3 C -0.037 4.037 4 N -0.189 5.189 5 C -0.026 4.026 6 C -0.186 4.186 7 C 0.350 3.650 8 O -0.419 6.419 9 N -0.365 5.365 10 C 0.007 3.993 11 C -0.002 4.002 12 H 0.091 0.909 13 C -0.182 4.182 14 C -0.178 4.178 15 C 0.016 3.984 16 C 0.050 3.950 17 N -0.331 5.331 18 C -0.348 4.348 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.022 4.022 27 O -0.248 6.248 28 C -0.046 4.046 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.453 -2.629 14.772 20.833 hybrid contribution 0.354 0.351 -0.592 0.774 sum -14.099 -2.278 14.180 20.125 Atomic orbital electron populations 1.20731 0.89610 1.03348 1.02945 1.20945 0.98018 0.93772 1.02333 1.22942 0.89977 0.97705 0.93102 1.67727 1.07991 1.30957 1.12180 1.23062 1.00536 0.86766 0.92212 1.21006 0.95165 0.94820 1.07584 1.17990 0.82115 0.88361 0.76496 1.90765 1.71206 1.29633 1.50304 1.45825 1.05665 1.10708 1.74331 1.21475 0.88293 0.86454 1.03108 1.23400 0.93144 0.93853 0.89814 0.90933 1.23075 0.96104 0.97383 1.01601 1.22788 0.97113 0.98025 0.99885 1.23815 0.81439 0.92960 1.00141 1.22292 0.96913 0.85049 0.90793 1.45794 1.83330 1.03426 1.00513 1.18980 1.43403 0.84670 0.87755 0.90272 1.24796 1.02280 0.96980 0.96290 1.69833 1.55069 1.22825 1.08895 0.86137 0.77656 0.82143 0.80102 1.21683 1.21711 1.20538 1.23012 0.95927 0.94170 0.89050 1.88909 1.22174 1.75544 1.38198 1.21616 0.92416 0.98991 0.91565 0.90607 0.91059 0.90938 0.82293 0.82148 0.75746 0.90081 0.90244 0.90481 0.90265 0.90788 0.90200 0.94154 0.90623 0.93675 0.93630 0.94169 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.03 36.01 0.36 -0.26 16 2 C -0.15 -1.33 5.89 -104.53 -0.62 -1.95 16 3 C 0.12 1.16 10.85 -17.47 -0.19 0.97 16 4 N -0.48 -5.89 10.35 -12.91 -0.13 -6.02 16 5 C 0.13 1.58 10.71 -17.13 -0.18 1.40 16 6 C -0.18 -2.21 5.89 -104.82 -0.62 -2.83 16 7 C 0.56 7.80 7.78 -12.33 -0.10 7.70 16 8 O -0.54 -8.90 16.42 5.32 0.09 -8.81 16 9 N -0.71 -9.06 5.49 -61.25 -0.34 -9.40 16 10 C 0.13 1.61 5.41 -4.04 -0.02 1.59 16 11 C 0.06 0.73 3.39 -25.65 -0.09 0.64 16 12 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 13 C -0.14 -1.63 6.60 -24.59 -0.16 -1.80 16 14 C -0.14 -1.92 6.47 -25.46 -0.16 -2.08 16 15 C 0.06 1.07 1.53 -90.28 -0.14 0.93 16 16 C 0.17 4.15 6.81 -3.26 -0.02 4.13 16 17 N -0.60 -15.76 3.70 -181.57 -0.67 -16.43 16 18 C -0.22 -6.32 10.69 -15.06 -0.16 -6.48 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -27.77 11.52 55.49 0.64 -27.13 16 22 Si 0.91 22.57 29.56 -169.99 -5.02 17.55 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.10 2.13 8.34 -3.26 -0.03 2.11 16 27 O -0.33 -6.04 10.97 -35.23 -0.39 -6.43 16 28 C -0.02 -0.21 9.39 -38.87 -0.37 -0.58 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.12 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.16 1.69 6.42 -52.49 -0.34 1.35 16 34 H 0.41 4.76 6.54 -40.82 -0.27 4.49 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 39 H 0.07 0.90 7.89 -51.92 -0.41 0.49 16 40 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 41 H 0.04 0.95 8.10 -51.93 -0.42 0.53 16 42 H 0.08 2.04 7.38 -51.93 -0.38 1.66 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 46 H 0.15 1.48 7.74 -52.48 -0.41 1.07 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -35.50 382.00 -9.47 -44.98 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.82 Total: 2.72 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.59 Total: 3.21 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.50 Total: -58.98 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.30 Total: -15.24 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.50 -9.47 -44.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.627 kcal (2) G-P(sol) polarization free energy of solvation -35.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds