Wall clock time and date at job start Tue Mar 31 2020 16:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38358 * 120.34658 * 2 1 4 4 N 1.31922 * 121.07708 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.88146 * 0.02562 * 4 3 2 6 6 C 1.39520 * 120.56641 * 359.97438 * 5 4 3 7 7 C 1.47841 * 120.56061 * 180.02562 * 6 5 4 8 8 O 1.21551 * 120.00397 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99800 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00006 * 180.27700 * 9 7 6 11 11 C 1.53000 * 109.47384 * 179.72704 * 10 9 7 12 12 H 1.08995 * 110.52675 * 57.18981 * 11 10 9 13 13 C 1.55054 * 110.59347 * 179.97438 * 11 10 9 14 14 C 1.54990 * 102.12331 * 155.12709 * 13 11 10 15 15 C 1.53431 * 103.85082 * 339.14466 * 14 13 11 16 16 C 1.53221 * 115.01836 * 227.72032 * 15 14 13 17 17 N 1.47722 * 85.89690 * 220.50505 * 16 15 14 18 18 C 1.36939 * 134.43087 * 204.16122 * 17 16 15 19 19 H 1.08000 * 120.00089 * 173.43131 * 18 17 16 20 20 C 1.38806 * 120.00320 * 353.43640 * 18 17 16 21 21 N 1.31627 * 119.99762 * 5.07706 * 20 18 17 22 22 Si 1.86796 * 120.00357 * 185.07536 * 20 18 17 23 23 H 1.48506 * 109.47154 * 94.98624 * 22 20 18 24 24 H 1.48504 * 109.47278 * 214.98592 * 22 20 18 25 25 H 1.48498 * 109.47091 * 334.98769 * 22 20 18 26 26 C 1.47713 * 91.13679 * 24.12102 * 17 16 15 27 27 O 1.42962 * 108.17406 * 358.31658 * 15 14 13 28 28 C 1.38349 * 120.34889 * 180.26296 * 2 1 3 29 29 H 1.09001 * 109.46800 * 89.99514 * 1 2 3 30 30 H 1.09002 * 109.46801 * 209.99816 * 1 2 3 31 31 H 1.09000 * 109.46856 * 329.99739 * 1 2 3 32 32 H 1.08002 * 119.45903 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.71572 * 179.97438 * 5 4 3 34 34 H 0.96999 * 120.00041 * 0.02562 * 9 7 6 35 35 H 1.09005 * 109.46808 * 299.72273 * 10 9 7 36 36 H 1.08997 * 109.47175 * 59.72196 * 10 9 7 37 37 H 1.08991 * 110.87256 * 273.29146 * 13 11 10 38 38 H 1.09006 * 110.86736 * 36.77027 * 13 11 10 39 39 H 1.09013 * 110.54611 * 97.73422 * 14 13 11 40 40 H 1.08994 * 110.55506 * 220.40324 * 14 13 11 41 41 H 1.08999 * 113.80535 * 334.74538 * 16 15 14 42 42 H 1.08998 * 113.80496 * 106.26255 * 16 15 14 43 43 H 0.97004 * 119.99768 * 180.02562 * 21 20 18 44 44 H 1.09005 * 113.80671 * 221.64500 * 26 17 16 45 45 H 1.08997 * 113.92006 * 90.13771 * 26 17 16 46 46 H 1.08007 * 120.86124 * 0.04186 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 0.0005 5 6 4.2350 0.1015 0.0005 6 6 3.6054 -1.1436 0.0006 7 6 4.4023 -2.3888 0.0011 8 8 3.8434 -3.4682 0.0007 9 7 5.7487 -2.3272 0.0022 10 6 6.5384 -3.5611 -0.0033 11 6 8.0283 -3.2131 -0.0077 12 1 8.2776 -2.5895 0.8508 13 6 8.8895 -4.5025 -0.0130 14 6 10.2114 -4.0084 -0.6538 15 6 9.8017 -2.7350 -1.4053 16 6 10.3128 -2.6404 -2.8467 17 7 10.5657 -1.2153 -2.5511 18 6 10.6700 -0.0821 -3.3128 19 1 10.7593 0.8828 -2.8360 20 6 10.6609 -0.1735 -4.6979 21 7 10.4519 -1.3358 -5.2793 22 14 10.9451 1.3527 -5.7366 23 1 12.3810 1.4401 -6.1055 24 1 10.1212 1.2729 -6.9696 25 1 10.5592 2.5586 -4.9606 26 6 10.6600 -1.5015 -1.1050 27 8 8.3930 -2.5545 -1.2420 28 6 2.2061 -1.1939 -0.0055 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6629 2.1275 0.0004 33 1 5.3136 0.1561 0.0005 34 1 6.1948 -1.4659 0.0029 35 1 6.3046 -4.1461 0.8862 36 1 6.2984 -4.1421 -0.8938 37 1 9.0600 -4.8598 1.0025 38 1 8.4247 -5.2774 -0.6226 39 1 10.9474 -3.7781 0.1166 40 1 10.6035 -4.7540 -1.3454 41 1 11.2181 -3.2187 -3.0313 42 1 9.5409 -2.8034 -3.5987 43 1 10.4459 -1.3997 -6.2472 44 1 10.1631 -0.7622 -0.4768 45 1 11.6684 -1.7392 -0.7664 46 1 1.6859 -2.1404 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053586174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:35 Heat of formation + Delta-G solvation = -12.656795 kcal Electronic energy + Delta-G solvation = -27954.029308 eV Core-core repulsion = 24037.482785 eV Total energy + Delta-G solvation = -3916.546522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77492 -41.26675 -40.11183 -37.98528 -35.84820 -34.63838 -34.11197 -33.38920 -32.94791 -30.71366 -28.77079 -28.17277 -26.74119 -26.07933 -24.69038 -23.80757 -23.06523 -22.32557 -21.34310 -20.58304 -18.92882 -18.73516 -18.05695 -17.68904 -17.53219 -16.97740 -16.57020 -16.30596 -16.11015 -15.81706 -15.36769 -15.27796 -15.00628 -14.86308 -14.48839 -14.28409 -14.18174 -14.07788 -13.70885 -13.52899 -13.47570 -13.19454 -13.00058 -12.83699 -12.81733 -12.65762 -12.50369 -12.30132 -12.14012 -11.63628 -11.41939 -11.35429 -11.22731 -10.93181 -10.91350 -10.52330 -10.36281 -10.27065 -9.97169 -8.90590 -7.92065 -5.23429 -0.45619 0.11308 1.42738 1.44935 1.53849 1.70489 1.99040 2.46426 2.73959 2.76275 3.24793 3.27701 3.40721 3.58470 3.61984 3.74724 3.76919 3.79570 3.84010 3.88848 4.05837 4.15604 4.16796 4.42746 4.47265 4.53238 4.61053 4.73958 4.75888 4.82480 4.83233 4.89374 4.93063 4.99586 5.04622 5.13185 5.15238 5.19926 5.20521 5.24602 5.28742 5.36993 5.52019 5.56224 5.92500 6.27455 6.32924 6.78138 6.90921 6.99817 7.60417 8.56561 9.25861 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003196 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.453435 B = 8758.728393 C =10879.876694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.139 4.139 3 C 0.117 3.883 4 N -0.506 5.506 5 C 0.123 3.877 6 C -0.195 4.195 7 C 0.563 3.437 8 O -0.573 6.573 9 N -0.711 5.711 10 C 0.132 3.868 11 C 0.055 3.945 12 H 0.095 0.905 13 C -0.133 4.133 14 C -0.133 4.133 15 C 0.080 3.920 16 C 0.167 3.833 17 N -0.639 5.639 18 C -0.232 4.232 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.954 5.954 22 Si 0.976 3.024 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.106 3.894 27 O -0.365 6.365 28 C -0.031 4.031 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.191 0.809 33 H 0.165 0.835 34 H 0.411 0.589 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.247 0.753 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 -2.450 17.555 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.141 4.141 3 C -0.040 4.040 4 N -0.214 5.214 5 C -0.035 4.035 6 C -0.200 4.200 7 C 0.351 3.649 8 O -0.454 6.454 9 N -0.362 5.362 10 C 0.009 3.991 11 C -0.002 4.002 12 H 0.113 0.887 13 C -0.171 4.171 14 C -0.172 4.172 15 C 0.039 3.961 16 C 0.042 3.958 17 N -0.365 5.365 18 C -0.360 4.360 19 H 0.100 0.900 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.804 3.196 23 H -0.212 1.212 24 H -0.223 1.223 25 H -0.191 1.191 26 C -0.019 4.019 27 O -0.284 6.284 28 C -0.057 4.057 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.208 0.792 33 H 0.182 0.818 34 H 0.247 0.753 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.082 0.918 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.160 -2.108 17.150 22.987 hybrid contribution 0.493 0.220 -1.264 1.374 sum -14.668 -1.889 15.886 21.704 Atomic orbital electron populations 1.20828 0.86947 1.04784 1.03883 1.21285 0.99782 0.92682 1.00316 1.23523 0.89363 0.99311 0.91802 1.67749 1.09421 1.31069 1.13143 1.23124 1.00930 0.86754 0.92717 1.20956 0.95786 0.94158 1.09148 1.18252 0.82394 0.88506 0.75795 1.90735 1.71781 1.30789 1.52104 1.45864 1.05531 1.11131 1.73648 1.21514 0.88095 0.86317 1.03207 1.23668 0.93445 0.94809 0.88272 0.88746 1.23093 0.93980 0.96336 1.03677 1.22763 0.98961 0.95308 1.00118 1.23349 0.81713 0.94672 0.96413 1.22230 0.95786 0.84467 0.93361 1.46205 1.83654 1.03503 1.03171 1.19391 1.42028 0.86032 0.88551 0.90001 1.25649 1.02993 0.99961 0.97608 1.70037 1.56833 1.24906 1.08505 0.85088 0.77357 0.79077 0.78040 1.21176 1.22294 1.19134 1.23228 0.97477 0.95128 0.86050 1.88875 1.21895 1.76543 1.41098 1.21824 0.92062 1.00036 0.91821 0.89728 0.90358 0.88839 0.79218 0.81758 0.75261 0.87752 0.92302 0.86528 0.90243 0.88108 0.90063 0.94620 0.95258 0.94404 0.92873 0.91844 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.03 71.24 0.71 -0.22 16 2 C -0.14 -2.26 5.89 -19.81 -0.12 -2.38 16 3 C 0.12 2.07 10.85 84.71 0.92 2.98 16 4 N -0.51 -12.07 10.35 -194.75 -2.01 -14.09 16 5 C 0.12 2.94 10.71 85.02 0.91 3.86 16 6 C -0.20 -4.82 5.89 -19.99 -0.12 -4.94 16 7 C 0.56 15.79 7.78 86.79 0.68 16.46 16 8 O -0.57 -19.14 16.42 -3.88 -0.06 -19.21 16 9 N -0.71 -17.95 5.49 -465.98 -2.56 -20.50 16 10 C 0.13 3.14 5.41 86.38 0.47 3.60 16 11 C 0.06 1.32 3.39 31.30 0.11 1.42 16 12 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.13 -2.58 6.60 31.98 0.21 -2.37 16 14 C -0.13 -3.29 6.47 31.42 0.20 -3.09 16 15 C 0.08 2.90 1.53 -10.45 -0.02 2.89 16 16 C 0.17 8.22 6.81 86.22 0.59 8.81 16 17 N -0.64 -33.90 3.70 -733.78 -2.72 -36.61 16 18 C -0.23 -13.53 10.69 84.03 0.90 -12.63 16 19 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 20 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 21 N -0.95 -60.03 11.52 21.65 0.25 -59.78 16 22 Si 0.98 47.44 29.56 68.60 2.03 49.47 16 23 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 C 0.11 4.20 8.34 86.22 0.72 4.92 16 27 O -0.36 -13.28 10.97 -148.98 -1.63 -14.91 16 28 C -0.03 -0.66 9.39 22.73 0.21 -0.45 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 31 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.19 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.17 3.56 6.42 -2.91 -0.02 3.54 16 34 H 0.41 9.60 6.54 -92.71 -0.61 9.00 16 35 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.08 1.57 8.05 -2.38 -0.02 1.55 16 39 H 0.10 2.01 7.89 -2.38 -0.02 1.99 16 40 H 0.08 2.03 7.94 -2.39 -0.02 2.01 16 41 H 0.04 1.75 8.10 -2.39 -0.02 1.74 16 42 H 0.03 1.68 7.38 -2.39 -0.02 1.66 16 43 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.06 2.25 8.06 -2.39 -0.02 2.24 16 46 H 0.15 2.99 7.74 -2.91 -0.02 2.97 16 Total: -1.00 -80.92 382.00 0.52 -80.40 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.39 Total: 20.03 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.84 Total: 15.21 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -7.04 Total: -130.99 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.70 Total: -34.12 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -80.92 0.52 -80.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.744 kcal (2) G-P(sol) polarization free energy of solvation -80.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds