Wall clock time and date at job start Tue Mar 31 2020 16:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38637 * 120.47007 * 2 1 4 4 C 1.38577 * 118.48953 * 180.02562 * 3 2 1 5 5 C 1.38608 * 119.34988 * 0.02562 * 4 3 2 6 6 N 1.31489 * 120.90077 * 359.72128 * 5 4 3 7 7 C 1.32747 * 121.64265 * 0.56555 * 6 5 4 8 8 C 1.48175 * 119.72188 * 179.70938 * 7 6 5 9 9 O 1.21509 * 119.99884 * 173.73222 * 8 7 6 10 10 N 1.34773 * 119.99925 * 353.73953 * 8 7 6 11 11 C 1.46499 * 119.99746 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46809 * 179.97438 * 11 10 8 13 13 H 1.08995 * 110.29106 * 57.87397 * 12 11 10 14 14 C 1.54564 * 110.32127 * 179.97438 * 12 11 10 15 15 C 1.54771 * 104.07414 * 142.48628 * 14 12 11 16 16 C 1.53344 * 103.67584 * 359.14055 * 15 14 12 17 17 C 1.52311 * 116.12814 * 108.91025 * 16 15 14 18 18 N 1.47284 * 87.68573 * 91.18149 * 17 16 15 19 19 C 1.36939 * 135.92355 * 206.12452 * 18 17 16 20 20 H 1.07996 * 120.00273 * 8.05361 * 19 18 17 21 21 C 1.38814 * 119.99489 * 188.05611 * 19 18 17 22 22 N 1.31621 * 119.99866 * 196.11272 * 21 19 18 23 23 Si 1.86797 * 120.00105 * 16.11091 * 21 19 18 24 24 H 1.48506 * 109.46925 * 269.99508 * 23 21 19 25 25 H 1.48497 * 109.47131 * 150.00326 * 23 21 19 26 26 H 1.48497 * 109.47540 * 30.00036 * 23 21 19 27 27 C 1.47278 * 88.14379 * 26.38111 * 18 17 16 28 28 O 1.43103 * 106.44656 * 337.44777 * 16 15 14 29 29 H 1.09001 * 109.47149 * 263.89814 * 1 2 3 30 30 H 1.09001 * 109.47116 * 23.89877 * 1 2 3 31 31 H 1.08996 * 109.46769 * 143.90001 * 1 2 3 32 32 H 1.08000 * 120.75328 * 0.04347 * 3 2 1 33 33 H 1.07998 * 120.32900 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.54819 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00302 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.47366 * 60.00173 * 11 10 8 37 37 H 1.09001 * 109.46866 * 299.99276 * 11 10 8 38 38 H 1.09000 * 110.50509 * 23.84329 * 14 12 11 39 39 H 1.09001 * 110.50817 * 261.13733 * 14 12 11 40 40 H 1.08998 * 110.58501 * 240.58706 * 15 14 12 41 41 H 1.09005 * 110.70719 * 117.75198 * 15 14 12 42 42 H 1.09005 * 113.51536 * 336.47416 * 17 16 15 43 43 H 1.08999 * 113.57636 * 205.89846 * 17 16 15 44 44 H 0.97006 * 119.99862 * 354.92256 * 22 21 19 45 45 H 1.08997 * 113.52099 * 88.32595 * 27 18 17 46 46 H 1.09004 * 113.51714 * 218.91577 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0016 6 7 3.5407 -1.2023 0.0034 7 6 2.2132 -1.2003 -0.0016 8 6 1.4767 -2.4860 -0.0021 9 8 0.2666 -2.4930 0.1083 10 7 2.1489 -3.6476 -0.1250 11 6 1.4207 -4.9188 -0.1250 12 6 2.4119 -6.0744 -0.2774 13 1 3.1473 -6.0501 0.5267 14 6 1.6636 -7.4268 -0.2792 15 6 2.4334 -8.2815 -1.3147 16 6 3.5296 -7.3366 -1.8216 17 6 4.9508 -7.6595 -1.3791 18 7 5.0841 -8.4687 -2.6025 19 6 5.8340 -9.5460 -2.9926 20 1 6.4394 -10.0727 -2.2699 21 6 5.8160 -9.9610 -4.3172 22 7 6.2651 -11.1558 -4.6386 23 14 5.1546 -8.8239 -5.6433 24 1 3.6971 -9.0541 -5.8109 25 1 5.8501 -9.1016 -6.9256 26 1 5.3906 -7.4121 -5.2479 27 6 4.0632 -7.6088 -3.2250 28 8 3.0687 -6.0064 -1.5645 29 1 -0.3633 -0.1092 1.0218 30 1 -0.3633 0.9396 -0.4163 31 1 -0.3633 -0.8303 -0.6055 32 1 1.6901 2.1415 0.0007 33 1 4.1722 2.0598 -0.0010 34 1 5.3114 -0.1250 -0.0016 35 1 3.1148 -3.6421 -0.2134 36 1 0.7155 -4.9336 -0.9559 37 1 0.8781 -5.0267 0.8142 38 1 0.6282 -7.2899 -0.5912 39 1 1.7084 -7.8893 0.7068 40 1 1.7756 -8.5784 -2.1315 41 1 2.8730 -9.1588 -0.8399 42 1 4.9980 -8.2467 -0.4619 43 1 5.6089 -6.7909 -1.3583 44 1 6.6759 -11.7175 -3.9628 45 1 4.4766 -6.7256 -3.7121 46 1 3.3641 -8.1533 -3.8598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053586269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:41 Heat of formation + Delta-G solvation = 22.398145 kcal Electronic energy + Delta-G solvation = -28032.376997 eV Core-core repulsion = 24117.350571 eV Total energy + Delta-G solvation = -3915.026426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.04902 -40.26519 -39.07394 -36.95702 -34.96273 -33.67539 -32.51174 -32.30169 -31.95178 -29.60706 -27.83748 -26.99257 -25.53452 -24.99601 -23.61203 -22.46203 -21.51875 -21.28061 -20.80862 -19.10388 -18.31023 -17.41659 -17.14110 -16.56059 -16.10331 -15.76643 -15.62994 -15.54764 -15.20434 -14.66447 -14.52441 -14.11909 -13.76252 -13.57946 -13.50932 -13.40479 -13.10460 -13.00532 -12.90779 -12.57486 -12.34286 -12.27045 -11.93868 -11.59127 -11.48440 -11.19651 -10.91173 -10.66564 -10.46235 -10.33823 -10.29310 -10.18542 -9.72086 -9.68336 -9.45148 -9.33199 -9.08447 -9.02035 -8.71083 -7.21275 -6.32999 -3.25209 0.32476 0.82804 2.51700 2.90022 3.42853 3.50783 3.53375 3.63656 3.81929 3.93222 4.38257 4.42106 4.55243 4.56995 4.58445 4.59226 4.70299 4.85695 4.94870 4.99869 5.03435 5.17397 5.20713 5.32454 5.37583 5.41112 5.47498 5.48906 5.59777 5.63859 5.78158 5.80119 5.91936 5.97882 6.18417 6.21005 6.23401 6.27217 6.30600 6.35089 6.37317 6.39841 6.57616 7.06873 7.22814 7.28389 7.52637 8.01327 8.21541 8.94779 9.47846 10.33693 11.16932 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002591 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.394871 B =10803.682620 C =11565.173893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.074 4.074 3 C -0.088 4.088 4 C -0.146 4.146 5 C 0.091 3.909 6 N -0.453 5.453 7 C 0.072 3.928 8 C 0.570 3.430 9 O -0.533 6.533 10 N -0.702 5.702 11 C 0.127 3.873 12 C 0.062 3.938 13 H 0.075 0.925 14 C -0.145 4.145 15 C -0.113 4.113 16 C 0.061 3.939 17 C 0.106 3.894 18 N -0.615 5.615 19 C -0.304 4.304 20 H 0.083 0.917 21 C -0.021 4.021 22 N -0.929 5.929 23 Si 1.058 2.942 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.281 1.281 27 C 0.117 3.883 28 O -0.354 6.354 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.416 0.584 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.262 0.738 45 H 0.054 0.946 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 24.019 12.920 29.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.166 4.166 5 C -0.069 4.069 6 N -0.163 5.163 7 C -0.066 4.066 8 C 0.355 3.645 9 O -0.411 6.411 10 N -0.353 5.353 11 C 0.003 3.997 12 C 0.004 3.996 13 H 0.093 0.907 14 C -0.183 4.183 15 C -0.151 4.151 16 C 0.020 3.980 17 C -0.021 4.021 18 N -0.345 5.345 19 C -0.430 4.430 20 H 0.101 0.899 21 C -0.221 4.221 22 N -0.571 5.571 23 Si 0.889 3.111 24 H -0.220 1.220 25 H -0.221 1.221 26 H -0.207 1.207 27 C -0.009 4.009 28 O -0.271 6.271 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.253 0.747 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.112 23.209 11.181 28.056 hybrid contribution 0.783 0.729 1.679 1.991 sum -10.328 23.938 12.860 29.070 Atomic orbital electron populations 1.21077 0.88945 1.03514 1.03953 1.20960 0.98466 0.92369 0.95855 1.21568 0.94191 0.98110 0.97553 1.22395 0.95292 0.99916 0.98993 1.22813 1.00610 0.87235 0.96233 1.67554 1.07033 1.32100 1.09637 1.20996 0.89917 0.93582 1.02065 1.17841 0.86502 0.83120 0.77036 1.90725 1.13120 1.86758 1.50499 1.45791 1.12204 1.05073 1.72198 1.21562 0.94249 0.81028 1.02844 1.23210 0.94001 0.94235 0.88183 0.90673 1.22955 1.00204 0.94625 1.00538 1.22321 0.96137 0.98150 0.98455 1.23579 0.93957 0.81206 0.99258 1.22709 0.92806 0.94182 0.92414 1.45977 1.45651 1.31167 1.11721 1.20081 1.25216 1.02210 0.95470 0.89919 1.25778 1.00616 0.99003 0.96685 1.70915 1.41726 1.07030 1.37404 0.83825 0.75798 0.75414 0.76036 1.21966 1.22107 1.20704 1.22590 0.91112 0.94203 0.92959 1.88959 1.74576 1.28861 1.34753 0.90358 0.92183 0.88119 0.84141 0.84179 0.81921 0.74733 0.90310 0.89987 0.90414 0.90312 0.90382 0.89667 0.93503 0.93994 0.92812 0.92876 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.76 36.01 0.32 -0.73 16 2 C -0.07 -0.71 5.93 -104.09 -0.62 -1.33 16 3 C -0.09 -0.63 9.83 -39.31 -0.39 -1.02 16 4 C -0.15 -0.94 10.11 -39.32 -0.40 -1.34 16 5 C 0.09 0.75 11.18 -17.56 -0.20 0.55 16 6 N -0.45 -5.02 9.56 -9.80 -0.09 -5.11 16 7 C 0.07 0.84 6.75 -83.01 -0.56 0.28 16 8 C 0.57 7.37 7.75 -12.18 -0.09 7.27 16 9 O -0.53 -7.62 13.30 5.36 0.07 -7.55 16 10 N -0.70 -8.58 5.50 -61.15 -0.34 -8.92 16 11 C 0.13 1.46 5.28 -4.04 -0.02 1.43 16 12 C 0.06 0.77 3.35 -25.91 -0.09 0.68 16 13 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 14 C -0.14 -1.69 6.65 -24.98 -0.17 -1.86 16 15 C -0.11 -1.75 6.50 -25.62 -0.17 -1.92 16 16 C 0.06 1.10 1.39 -91.01 -0.13 0.97 16 17 C 0.11 2.13 8.18 -7.85 -0.06 2.07 16 18 N -0.62 -15.26 3.60 -184.89 -0.67 -15.92 16 19 C -0.30 -8.73 11.02 -15.06 -0.17 -8.90 16 20 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 21 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 22 N -0.93 -29.23 13.70 55.49 0.76 -28.47 16 23 Si 1.06 26.88 25.53 -169.99 -4.34 22.54 16 24 H -0.29 -7.10 6.96 56.52 0.39 -6.70 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 26 H -0.28 -6.74 5.71 56.52 0.32 -6.42 16 27 C 0.12 2.57 5.20 -7.71 -0.04 2.53 16 28 O -0.35 -5.76 11.12 -35.23 -0.39 -6.15 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 31 H 0.10 1.10 5.81 -51.93 -0.30 0.80 16 32 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.42 5.08 7.82 -40.82 -0.32 4.76 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.81 7.87 -51.93 -0.41 0.40 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 41 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 42 H 0.05 0.89 8.07 -51.93 -0.42 0.48 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 45 H 0.05 1.19 6.98 -51.93 -0.36 0.83 16 46 H 0.06 1.29 6.34 -51.93 -0.33 0.96 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -34.17 372.28 -9.11 -43.29 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.86 Total: 2.71 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.87 Total: -2.03 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.34 Total: -58.43 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.32 Total: -13.70 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -4.34 Total: 22.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.17 -9.11 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.685 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds