Wall clock time and date at job start Tue Mar 31 2020 16:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38637 * 120.47007 * 2 1 4 4 C 1.38577 * 118.48953 * 180.02562 * 3 2 1 5 5 C 1.38608 * 119.34988 * 0.02562 * 4 3 2 6 6 N 1.31489 * 120.90077 * 359.72128 * 5 4 3 7 7 C 1.32747 * 121.64265 * 0.56555 * 6 5 4 8 8 C 1.48175 * 119.72188 * 179.70938 * 7 6 5 9 9 O 1.21509 * 119.99884 * 173.73222 * 8 7 6 10 10 N 1.34773 * 119.99925 * 353.73953 * 8 7 6 11 11 C 1.46499 * 119.99746 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46809 * 179.97438 * 11 10 8 13 13 H 1.08995 * 110.29106 * 57.87397 * 12 11 10 14 14 C 1.54564 * 110.32127 * 179.97438 * 12 11 10 15 15 C 1.54771 * 104.07414 * 142.48628 * 14 12 11 16 16 C 1.53344 * 103.67584 * 359.14055 * 15 14 12 17 17 C 1.52311 * 116.12814 * 108.91025 * 16 15 14 18 18 N 1.47284 * 87.68573 * 91.18149 * 17 16 15 19 19 C 1.36939 * 135.92355 * 206.12452 * 18 17 16 20 20 H 1.07996 * 120.00273 * 8.05361 * 19 18 17 21 21 C 1.38814 * 119.99489 * 188.05611 * 19 18 17 22 22 N 1.31621 * 119.99866 * 196.11272 * 21 19 18 23 23 Si 1.86797 * 120.00105 * 16.11091 * 21 19 18 24 24 H 1.48506 * 109.46925 * 269.99508 * 23 21 19 25 25 H 1.48497 * 109.47131 * 150.00326 * 23 21 19 26 26 H 1.48497 * 109.47540 * 30.00036 * 23 21 19 27 27 C 1.47278 * 88.14379 * 26.38111 * 18 17 16 28 28 O 1.43103 * 106.44656 * 337.44777 * 16 15 14 29 29 H 1.09001 * 109.47149 * 263.89814 * 1 2 3 30 30 H 1.09001 * 109.47116 * 23.89877 * 1 2 3 31 31 H 1.08996 * 109.46769 * 143.90001 * 1 2 3 32 32 H 1.08000 * 120.75328 * 0.04347 * 3 2 1 33 33 H 1.07998 * 120.32900 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.54819 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00302 * 359.97438 * 10 8 7 36 36 H 1.08993 * 109.47366 * 60.00173 * 11 10 8 37 37 H 1.09001 * 109.46866 * 299.99276 * 11 10 8 38 38 H 1.09000 * 110.50509 * 23.84329 * 14 12 11 39 39 H 1.09001 * 110.50817 * 261.13733 * 14 12 11 40 40 H 1.08998 * 110.58501 * 240.58706 * 15 14 12 41 41 H 1.09005 * 110.70719 * 117.75198 * 15 14 12 42 42 H 1.09005 * 113.51536 * 336.47416 * 17 16 15 43 43 H 1.08999 * 113.57636 * 205.89846 * 17 16 15 44 44 H 0.97006 * 119.99862 * 354.92256 * 22 21 19 45 45 H 1.08997 * 113.52099 * 88.32595 * 27 18 17 46 46 H 1.09004 * 113.51714 * 218.91577 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5950 1.1470 -0.0005 5 6 4.2322 -0.0839 -0.0016 6 7 3.5407 -1.2023 0.0034 7 6 2.2132 -1.2003 -0.0016 8 6 1.4767 -2.4860 -0.0021 9 8 0.2666 -2.4930 0.1083 10 7 2.1489 -3.6476 -0.1250 11 6 1.4207 -4.9188 -0.1250 12 6 2.4119 -6.0744 -0.2774 13 1 3.1473 -6.0501 0.5267 14 6 1.6636 -7.4268 -0.2792 15 6 2.4334 -8.2815 -1.3147 16 6 3.5296 -7.3366 -1.8216 17 6 4.9508 -7.6595 -1.3791 18 7 5.0841 -8.4687 -2.6025 19 6 5.8340 -9.5460 -2.9926 20 1 6.4394 -10.0727 -2.2699 21 6 5.8160 -9.9610 -4.3172 22 7 6.2651 -11.1558 -4.6386 23 14 5.1546 -8.8239 -5.6433 24 1 3.6971 -9.0541 -5.8109 25 1 5.8501 -9.1016 -6.9256 26 1 5.3906 -7.4121 -5.2479 27 6 4.0632 -7.6088 -3.2250 28 8 3.0687 -6.0064 -1.5645 29 1 -0.3633 -0.1092 1.0218 30 1 -0.3633 0.9396 -0.4163 31 1 -0.3633 -0.8303 -0.6055 32 1 1.6901 2.1415 0.0007 33 1 4.1722 2.0598 -0.0010 34 1 5.3114 -0.1250 -0.0016 35 1 3.1148 -3.6421 -0.2134 36 1 0.7155 -4.9336 -0.9559 37 1 0.8781 -5.0267 0.8142 38 1 0.6282 -7.2899 -0.5912 39 1 1.7084 -7.8893 0.7068 40 1 1.7756 -8.5784 -2.1315 41 1 2.8730 -9.1588 -0.8399 42 1 4.9980 -8.2467 -0.4619 43 1 5.6089 -6.7909 -1.3583 44 1 6.6759 -11.7175 -3.9628 45 1 4.4766 -6.7256 -3.7121 46 1 3.3641 -8.1533 -3.8598 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053586269.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:52:39 Heat of formation + Delta-G solvation = -2.570271 kcal Electronic energy + Delta-G solvation = -28033.459709 eV Core-core repulsion = 24117.350571 eV Total energy + Delta-G solvation = -3916.109138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.85651 -41.57521 -39.95730 -38.40829 -35.97158 -34.57156 -34.31521 -33.26575 -32.95201 -30.91145 -29.07202 -28.16049 -27.20310 -25.89972 -24.65477 -23.37412 -23.05087 -22.29176 -21.70671 -20.74558 -19.50552 -19.10547 -17.92666 -17.59538 -17.39995 -16.84055 -16.51498 -16.41435 -16.28170 -16.19642 -15.76552 -15.37164 -15.13024 -14.94786 -14.64594 -14.44793 -14.13381 -14.02252 -13.70227 -13.60202 -13.39657 -13.27390 -13.17975 -12.93491 -12.72774 -12.67012 -12.40725 -12.23310 -12.14784 -11.68196 -11.48267 -11.31964 -11.10479 -10.85452 -10.77508 -10.52990 -10.42919 -10.26717 -9.87050 -9.30531 -8.65234 -5.50491 -0.34585 0.24003 1.38000 1.48518 1.63461 1.69828 2.03965 2.49032 2.58190 2.84240 3.02724 3.14673 3.18379 3.39085 3.57749 3.67418 3.76550 3.86056 3.94800 3.97447 4.05142 4.09745 4.34947 4.42636 4.47135 4.51009 4.56916 4.57167 4.60705 4.67485 4.77382 4.79157 4.80953 4.83477 4.93971 5.00165 5.09851 5.10291 5.12685 5.17014 5.22204 5.28233 5.45134 5.69152 5.91429 5.96210 6.36379 6.65761 6.79737 7.10598 7.28329 8.21973 8.86312 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017613 B = 0.002591 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.394871 B =10803.682620 C =11565.173893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.131 4.131 5 C 0.078 3.922 6 N -0.478 5.478 7 C 0.040 3.960 8 C 0.564 3.436 9 O -0.556 6.556 10 N -0.703 5.703 11 C 0.131 3.869 12 C 0.062 3.938 13 H 0.088 0.912 14 C -0.133 4.133 15 C -0.116 4.116 16 C 0.083 3.917 17 C 0.105 3.895 18 N -0.643 5.643 19 C -0.290 4.290 20 H 0.056 0.944 21 C -0.077 4.077 22 N -0.964 5.964 23 Si 1.095 2.905 24 H -0.275 1.275 25 H -0.298 1.298 26 H -0.263 1.263 27 C 0.107 3.893 28 O -0.364 6.364 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.249 0.751 45 H 0.052 0.948 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 27.371 14.061 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.150 4.150 5 C -0.082 4.082 6 N -0.190 5.190 7 C -0.097 4.097 8 C 0.350 3.650 9 O -0.435 6.435 10 N -0.354 5.354 11 C 0.008 3.992 12 C 0.004 3.996 13 H 0.106 0.894 14 C -0.171 4.171 15 C -0.154 4.154 16 C 0.042 3.958 17 C -0.021 4.021 18 N -0.373 5.373 19 C -0.417 4.417 20 H 0.074 0.926 21 C -0.270 4.270 22 N -0.608 5.608 23 Si 0.921 3.079 24 H -0.201 1.201 25 H -0.226 1.226 26 H -0.188 1.188 27 C -0.018 4.018 28 O -0.282 6.282 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.190 0.810 33 H 0.196 0.804 34 H 0.203 0.797 35 H 0.252 0.748 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.290 26.588 12.369 31.795 hybrid contribution 1.207 -0.179 1.454 1.898 sum -11.083 26.409 13.823 31.801 Atomic orbital electron populations 1.20992 0.88826 1.03748 1.03406 1.21175 0.98817 0.92852 0.96094 1.21977 0.94702 0.98323 0.96252 1.22822 0.95282 1.00628 0.96316 1.23365 1.01758 0.87370 0.95728 1.67490 1.06954 1.33830 1.10699 1.20917 0.90488 0.93504 1.04752 1.18182 0.86435 0.83842 0.76503 1.90705 1.13957 1.87216 1.51628 1.45833 1.12151 1.05278 1.72116 1.21556 0.93774 0.80496 1.03375 1.23416 0.94377 0.95119 0.86642 0.89412 1.22943 1.00335 0.93086 1.00688 1.22341 0.95651 0.97869 0.99499 1.23112 0.93661 0.82953 0.96042 1.22870 0.94425 0.93656 0.91112 1.45977 1.45918 1.31355 1.14026 1.19939 1.23958 1.02988 0.94829 0.92636 1.26939 1.01485 0.99498 0.99097 1.71009 1.44263 1.08340 1.37226 0.83359 0.76244 0.74742 0.73583 1.20149 1.22586 1.18772 1.22720 0.90501 0.93368 0.95252 1.88947 1.74874 1.27491 1.36916 0.90683 0.89697 0.90638 0.80969 0.80398 0.79704 0.74836 0.91188 0.88239 0.88674 0.87755 0.90498 0.90566 0.92394 0.93460 0.94159 0.93063 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 8.76 71.24 0.62 -1.28 16 2 C -0.09 -1.56 5.93 -19.52 -0.12 -1.68 16 3 C -0.09 -0.97 9.83 22.45 0.22 -0.75 16 4 C -0.13 -1.21 10.11 22.44 0.23 -0.99 16 5 C 0.08 1.10 11.18 84.83 0.95 2.05 16 6 N -0.48 -10.16 9.56 -184.90 -1.77 -11.93 16 7 C 0.04 0.91 6.75 41.89 0.28 1.20 16 8 C 0.56 14.54 7.75 86.88 0.67 15.21 16 9 O -0.56 -15.99 13.30 -3.74 -0.05 -16.04 16 10 N -0.70 -16.69 5.50 -465.66 -2.56 -19.25 16 11 C 0.13 2.79 5.28 86.38 0.46 3.24 16 12 C 0.06 1.38 3.35 31.13 0.10 1.49 16 13 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.13 -2.67 6.65 31.73 0.21 -2.46 16 15 C -0.12 -3.36 6.50 31.31 0.20 -3.16 16 16 C 0.08 2.88 1.39 -11.04 -0.02 2.87 16 17 C 0.11 4.12 8.18 83.48 0.68 4.81 16 18 N -0.64 -31.75 3.60 -740.36 -2.67 -34.41 16 19 C -0.29 -17.00 11.02 84.03 0.93 -16.07 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 22 N -0.96 -62.45 13.70 21.65 0.30 -62.15 16 23 Si 1.10 54.57 25.53 68.60 1.75 56.33 16 24 H -0.28 -12.83 6.96 99.48 0.69 -12.14 16 25 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 26 H -0.26 -12.13 5.71 99.48 0.57 -11.56 16 27 C 0.11 4.58 5.20 83.58 0.43 5.01 16 28 O -0.36 -11.16 11.12 -148.98 -1.66 -12.82 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 0.94 8.06 -2.39 -0.02 0.92 16 31 H 0.08 1.68 5.81 -2.39 -0.01 1.67 16 32 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 34 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 35 H 0.42 9.87 7.82 -92.71 -0.72 9.15 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 1.64 7.87 -2.39 -0.02 1.62 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 2.26 8.12 -2.39 -0.02 2.24 16 41 H 0.08 2.36 7.93 -2.38 -0.02 2.34 16 42 H 0.06 2.14 8.07 -2.38 -0.02 2.12 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.25 16.13 8.73 -92.70 -0.81 15.32 16 45 H 0.05 2.23 6.98 -2.39 -0.02 2.21 16 46 H 0.05 2.36 6.34 -2.38 -0.02 2.35 16 Total: -1.00 -76.99 372.28 -0.24 -77.23 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.08 Total: 17.74 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.33 Total: 5.30 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -6.70 Total: -127.74 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.71 Total: -28.86 kcal Atomic # 14 Polarization: 54.57 SS G_CDS: 1.75 Total: 56.33 kcal Total: -76.99 -0.24 -77.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053586269.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.661 kcal (2) G-P(sol) polarization free energy of solvation -76.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds