Wall clock time and date at job start Tue Mar 31 2020 17:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.78854 * 2 1 4 4 C 1.38183 * 119.16076 * 180.02562 * 3 2 1 5 5 N 1.31888 * 120.76577 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72516 * 359.77083 * 5 4 3 7 7 C 1.38227 * 120.76322 * 0.49530 * 6 5 4 8 8 C 1.50700 * 120.41833 * 179.77188 * 7 6 5 9 9 C 1.50701 * 109.46758 * 264.72185 * 8 7 6 10 10 O 1.21282 * 120.00427 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99484 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99647 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.77267 * 31.47334 * 12 11 9 14 14 C 1.55056 * 111.04946 * 267.81061 * 12 11 9 15 15 O 1.44604 * 103.66832 * 205.24216 * 14 12 11 16 16 C 1.42834 * 106.73730 * 39.09251 * 15 14 12 17 17 C 1.52649 * 115.96943 * 202.46991 * 16 15 14 18 18 N 1.47226 * 87.78450 * 218.40508 * 17 16 15 19 19 C 1.36927 * 135.97019 * 206.37798 * 18 17 16 20 20 H 1.08006 * 120.00179 * 6.48240 * 19 18 17 21 21 C 1.38815 * 120.00379 * 186.48545 * 19 18 17 22 22 N 1.31623 * 119.99457 * 6.41318 * 21 19 18 23 23 Si 1.86799 * 120.00066 * 186.41286 * 21 19 18 24 24 H 1.48494 * 109.47199 * 265.01504 * 23 21 19 25 25 H 1.48494 * 109.47283 * 25.02312 * 23 21 19 26 26 H 1.48503 * 109.46714 * 145.01728 * 23 21 19 27 27 C 1.47220 * 88.06380 * 26.63410 * 18 17 16 28 28 C 1.53333 * 108.32566 * 334.30051 * 16 15 14 29 29 H 1.08997 * 109.47467 * 269.97836 * 1 2 3 30 30 H 1.09002 * 109.46996 * 29.97888 * 1 2 3 31 31 H 1.09003 * 109.47147 * 149.97627 * 1 2 3 32 32 H 1.07999 * 120.41702 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.61471 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.61985 * 180.24422 * 6 5 4 35 35 H 1.09002 * 109.46988 * 144.72425 * 8 7 6 36 36 H 1.08997 * 109.47236 * 24.71895 * 8 7 6 37 37 H 0.96997 * 120.00085 * 359.97438 * 11 9 8 38 38 H 1.09001 * 110.58601 * 323.78818 * 14 12 11 39 39 H 1.09002 * 110.58703 * 86.69894 * 14 12 11 40 40 H 1.09005 * 113.49880 * 103.68011 * 17 16 15 41 41 H 1.08993 * 113.56001 * 333.14639 * 17 16 15 42 42 H 0.96996 * 119.99426 * 180.02562 * 22 21 19 43 43 H 1.08998 * 113.49939 * 88.09171 * 27 18 17 44 44 H 1.09002 * 113.50289 * 218.63708 * 27 18 17 45 45 H 1.09004 * 110.55634 * 120.19461 * 28 16 15 46 46 H 1.09002 * 110.56452 * 243.04112 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0005 6 6 3.5983 -1.1516 0.0044 7 6 2.2166 -1.1909 -0.0004 8 6 1.4908 -2.5116 0.0002 9 6 1.1394 -2.8922 -1.4149 10 8 1.4483 -2.1631 -2.3336 11 7 0.4818 -4.0430 -1.6597 12 6 0.1396 -4.4128 -3.0353 13 1 0.8863 -4.0355 -3.7341 14 6 -1.2762 -3.9056 -3.4126 15 8 -1.6963 -4.8115 -4.4585 16 6 -1.2384 -6.1118 -4.0847 17 6 -1.0807 -7.1175 -5.2222 18 7 -1.5984 -8.1478 -4.3068 19 6 -1.4740 -9.5056 -4.1813 20 1 -0.7835 -10.0453 -4.8126 21 6 -2.2355 -10.1886 -3.2430 22 7 -3.1660 -9.5535 -2.5623 23 14 -1.9396 -12.0090 -2.9462 24 1 -2.8844 -12.8049 -3.7702 25 1 -0.5446 -12.3516 -3.3226 26 1 -2.1546 -12.3176 -1.5096 27 6 -2.3137 -7.0797 -3.5892 28 6 -0.0176 -5.9490 -3.1714 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0754 -0.0010 34 1 4.1585 -2.0750 0.0083 35 1 0.5785 -2.4246 0.5903 36 1 2.1324 -3.2786 0.4341 37 1 0.2350 -4.6263 -0.9250 38 1 -1.9476 -3.9710 -2.5564 39 1 -1.2299 -2.8830 -3.7872 40 1 -0.0442 -7.2801 -5.5180 41 1 -1.7357 -6.9214 -6.0711 42 1 -3.6978 -10.0307 -1.9064 43 1 -3.3045 -6.8725 -3.9935 44 1 -2.3177 -7.2102 -2.5071 45 1 -0.2046 -6.4025 -2.1980 46 1 0.8677 -6.3851 -3.6343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053832596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:41 Heat of formation + Delta-G solvation = 14.676244 kcal Electronic energy + Delta-G solvation = -27984.685510 eV Core-core repulsion = 24069.324237 eV Total energy + Delta-G solvation = -3915.361273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89354 -40.17803 -39.13395 -36.43722 -34.73110 -34.50704 -32.80010 -32.17224 -30.54834 -28.77122 -28.15601 -27.43161 -25.83273 -24.81270 -23.33639 -22.46573 -22.11683 -21.27633 -20.56715 -18.88452 -17.46995 -17.05863 -16.80815 -16.75433 -16.44445 -15.51044 -15.29581 -15.19398 -15.01618 -14.81904 -14.53117 -13.97658 -13.83924 -13.61874 -13.38738 -13.14211 -13.00245 -12.95069 -12.89655 -12.67448 -12.37268 -12.25741 -11.71710 -11.60770 -11.47318 -11.05592 -10.98842 -10.83507 -10.68673 -10.49927 -10.15430 -10.10126 -9.69404 -9.65607 -9.58149 -9.20354 -9.15884 -8.85304 -8.76503 -6.98165 -5.86670 -3.18175 0.84341 1.02073 2.43848 2.95581 3.33754 3.39141 3.41145 3.58510 4.12840 4.19341 4.33535 4.41064 4.46071 4.52840 4.61156 4.64066 4.82601 4.95037 5.03531 5.05205 5.09941 5.19111 5.21827 5.29236 5.29852 5.31837 5.33860 5.50548 5.51635 5.66316 5.80216 5.83982 5.87844 6.06054 6.07253 6.22148 6.34721 6.42499 6.46027 6.55961 6.58546 6.91022 7.08211 7.33445 7.39631 7.55201 7.74771 7.87190 8.05137 8.94861 9.61034 10.54456 11.32105 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.002290 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.631250 B =12224.577141 C =12644.932011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 C -0.174 4.174 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.118 4.118 8 C -0.101 4.101 9 C 0.514 3.486 10 O -0.531 6.531 11 N -0.717 5.717 12 C 0.109 3.891 13 H 0.104 0.896 14 C 0.042 3.958 15 O -0.359 6.359 16 C 0.044 3.956 17 C 0.126 3.874 18 N -0.602 5.602 19 C -0.217 4.217 20 H 0.083 0.917 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.289 1.289 27 C 0.157 3.843 28 C -0.114 4.114 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.404 0.596 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.254 0.746 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 19.422 8.973 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.033 4.033 3 C -0.194 4.194 4 C -0.058 4.058 5 N -0.198 5.198 6 C -0.042 4.042 7 C -0.120 4.120 8 C -0.142 4.142 9 C 0.300 3.700 10 O -0.407 6.407 11 N -0.370 5.370 12 C 0.004 3.996 13 H 0.122 0.878 14 C -0.037 4.037 15 O -0.275 6.275 16 C 0.004 3.996 17 C 0.000 4.000 18 N -0.330 5.330 19 C -0.344 4.344 20 H 0.101 0.899 21 C -0.204 4.204 22 N -0.565 5.565 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.216 1.216 27 C 0.030 3.970 28 C -0.152 4.152 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.239 0.761 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.580 19.671 8.233 23.378 hybrid contribution -1.082 -1.363 0.606 1.843 sum 8.498 18.308 8.838 22.034 Atomic orbital electron populations 1.20868 0.90328 1.03791 1.02651 1.20152 0.96689 0.92461 0.94004 1.22000 0.95629 0.98508 1.03276 1.22725 0.91790 0.96244 0.95070 1.67682 1.41095 0.98451 1.12558 1.22609 0.90830 0.96368 0.94429 1.20150 0.94948 0.94167 1.02776 1.20621 1.02541 0.95750 0.95248 1.20486 0.77472 0.81020 0.90990 1.90745 1.53019 1.50848 1.46105 1.45978 1.58816 1.22916 1.09244 1.22703 0.97815 0.95718 0.83388 0.87810 1.23820 0.93416 0.94562 0.91865 1.88788 1.77902 1.17634 1.43215 1.23814 0.95491 0.82501 0.97840 1.22437 0.97905 0.86765 0.92940 1.45417 1.55367 1.01886 1.30303 1.18913 1.18650 0.79637 1.17197 0.89877 1.24846 0.97421 0.98234 0.99889 1.69863 1.23325 1.35403 1.27916 0.86078 0.77794 0.84440 0.77321 1.21531 1.20447 1.21562 1.22386 0.92921 0.83547 0.98110 1.22588 0.98490 0.92834 1.01312 0.90350 0.90782 0.91012 0.84856 0.82876 0.82968 0.87470 0.87379 0.76057 0.92079 0.89298 0.93560 0.94041 0.93565 0.94540 0.92038 0.89532 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.31 36.01 0.34 -0.52 16 2 C -0.03 -0.23 5.92 -104.32 -0.62 -0.85 16 3 C -0.17 -1.48 9.82 -39.44 -0.39 -1.87 16 4 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 5 N -0.49 -5.58 10.36 -13.25 -0.14 -5.72 16 6 C 0.11 1.19 10.84 -17.54 -0.19 1.00 16 7 C -0.12 -1.13 4.39 -104.48 -0.46 -1.59 16 8 C -0.10 -0.76 5.18 -29.03 -0.15 -0.91 16 9 C 0.51 5.61 7.15 -10.98 -0.08 5.53 16 10 O -0.53 -8.00 15.68 5.56 0.09 -7.91 16 11 N -0.72 -7.43 5.20 -51.72 -0.27 -7.70 16 12 C 0.11 1.45 3.51 -65.77 -0.23 1.22 16 13 H 0.10 1.51 7.54 -51.93 -0.39 1.11 16 14 C 0.04 0.60 7.42 38.24 0.28 0.88 16 15 O -0.36 -6.47 11.32 -35.23 -0.40 -6.87 16 16 C 0.04 0.84 1.66 -90.67 -0.15 0.69 16 17 C 0.13 2.65 8.20 -8.04 -0.07 2.58 16 18 N -0.60 -15.22 3.73 -184.62 -0.69 -15.91 16 19 C -0.22 -5.94 10.73 -15.06 -0.16 -6.10 16 20 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -26.64 11.82 55.49 0.66 -25.99 16 23 Si 0.91 21.53 29.56 -169.99 -5.02 16.50 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 C 0.16 3.65 6.73 -7.90 -0.05 3.59 16 28 C -0.11 -1.77 6.20 -25.49 -0.16 -1.93 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.07 0.57 6.36 -51.93 -0.33 0.24 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.11 0.58 7.10 -51.93 -0.37 0.21 16 36 H 0.11 0.57 8.06 -51.93 -0.42 0.15 16 37 H 0.40 3.28 8.41 -40.82 -0.34 2.93 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.90 7.91 -51.93 -0.41 0.49 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.06 1.51 7.40 -51.93 -0.38 1.13 16 45 H 0.09 1.34 7.45 -51.93 -0.39 0.96 16 46 H 0.08 1.31 7.82 -51.93 -0.41 0.90 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -34.63 379.90 -9.21 -43.84 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.79 Total: 1.88 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.38 Total: 2.16 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.44 Total: -55.32 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.31 Total: -14.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.63 -9.21 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053832596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.517 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds