Wall clock time and date at job start Tue Mar 31 2020 17:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.78854 * 2 1 4 4 C 1.38183 * 119.16076 * 180.02562 * 3 2 1 5 5 N 1.31888 * 120.76577 * 359.97438 * 4 3 2 6 6 C 1.31858 * 121.72516 * 359.77083 * 5 4 3 7 7 C 1.38227 * 120.76322 * 0.49530 * 6 5 4 8 8 C 1.50700 * 120.41833 * 179.77188 * 7 6 5 9 9 C 1.50701 * 109.46758 * 264.72185 * 8 7 6 10 10 O 1.21282 * 120.00427 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99484 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99647 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.77267 * 31.47334 * 12 11 9 14 14 C 1.55056 * 111.04946 * 267.81061 * 12 11 9 15 15 O 1.44604 * 103.66832 * 205.24216 * 14 12 11 16 16 C 1.42834 * 106.73730 * 39.09251 * 15 14 12 17 17 C 1.52649 * 115.96943 * 202.46991 * 16 15 14 18 18 N 1.47226 * 87.78450 * 218.40508 * 17 16 15 19 19 C 1.36927 * 135.97019 * 206.37798 * 18 17 16 20 20 H 1.08006 * 120.00179 * 6.48240 * 19 18 17 21 21 C 1.38815 * 120.00379 * 186.48545 * 19 18 17 22 22 N 1.31623 * 119.99457 * 6.41318 * 21 19 18 23 23 Si 1.86799 * 120.00066 * 186.41286 * 21 19 18 24 24 H 1.48494 * 109.47199 * 265.01504 * 23 21 19 25 25 H 1.48494 * 109.47283 * 25.02312 * 23 21 19 26 26 H 1.48503 * 109.46714 * 145.01728 * 23 21 19 27 27 C 1.47220 * 88.06380 * 26.63410 * 18 17 16 28 28 C 1.53333 * 108.32566 * 334.30051 * 16 15 14 29 29 H 1.08997 * 109.47467 * 269.97836 * 1 2 3 30 30 H 1.09002 * 109.46996 * 29.97888 * 1 2 3 31 31 H 1.09003 * 109.47147 * 149.97627 * 1 2 3 32 32 H 1.07999 * 120.41702 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.61471 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.61985 * 180.24422 * 6 5 4 35 35 H 1.09002 * 109.46988 * 144.72425 * 8 7 6 36 36 H 1.08997 * 109.47236 * 24.71895 * 8 7 6 37 37 H 0.96997 * 120.00085 * 359.97438 * 11 9 8 38 38 H 1.09001 * 110.58601 * 323.78818 * 14 12 11 39 39 H 1.09002 * 110.58703 * 86.69894 * 14 12 11 40 40 H 1.09005 * 113.49880 * 103.68011 * 17 16 15 41 41 H 1.08993 * 113.56001 * 333.14639 * 17 16 15 42 42 H 0.96996 * 119.99426 * 180.02562 * 22 21 19 43 43 H 1.08998 * 113.49939 * 88.09171 * 27 18 17 44 44 H 1.09002 * 113.50289 * 218.63708 * 27 18 17 45 45 H 1.09004 * 110.55634 * 120.19461 * 28 16 15 46 46 H 1.09002 * 110.56452 * 243.04112 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 -0.0005 5 7 4.2403 0.0001 -0.0005 6 6 3.5983 -1.1516 0.0044 7 6 2.2166 -1.1909 -0.0004 8 6 1.4908 -2.5116 0.0002 9 6 1.1394 -2.8922 -1.4149 10 8 1.4483 -2.1631 -2.3336 11 7 0.4818 -4.0430 -1.6597 12 6 0.1396 -4.4128 -3.0353 13 1 0.8863 -4.0355 -3.7341 14 6 -1.2762 -3.9056 -3.4126 15 8 -1.6963 -4.8115 -4.4585 16 6 -1.2384 -6.1118 -4.0847 17 6 -1.0807 -7.1175 -5.2222 18 7 -1.5984 -8.1478 -4.3068 19 6 -1.4740 -9.5056 -4.1813 20 1 -0.7835 -10.0453 -4.8126 21 6 -2.2355 -10.1886 -3.2430 22 7 -3.1660 -9.5535 -2.5623 23 14 -1.9396 -12.0090 -2.9462 24 1 -2.8844 -12.8049 -3.7702 25 1 -0.5446 -12.3516 -3.3226 26 1 -2.1546 -12.3176 -1.5096 27 6 -2.3137 -7.0797 -3.5892 28 6 -0.0176 -5.9490 -3.1714 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6967 2.1377 -0.0004 33 1 4.1583 2.0754 -0.0010 34 1 4.1585 -2.0750 0.0083 35 1 0.5785 -2.4246 0.5903 36 1 2.1324 -3.2786 0.4341 37 1 0.2350 -4.6263 -0.9250 38 1 -1.9476 -3.9710 -2.5564 39 1 -1.2299 -2.8830 -3.7872 40 1 -0.0442 -7.2801 -5.5180 41 1 -1.7357 -6.9214 -6.0711 42 1 -3.6978 -10.0307 -1.9064 43 1 -3.3045 -6.8725 -3.9935 44 1 -2.3177 -7.2102 -2.5071 45 1 -0.2046 -6.4025 -2.1980 46 1 0.8677 -6.3851 -3.6343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053832596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:40 Heat of formation + Delta-G solvation = -9.488191 kcal Electronic energy + Delta-G solvation = -27985.733358 eV Core-core repulsion = 24069.324237 eV Total energy + Delta-G solvation = -3916.409121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79734 -41.34128 -40.17367 -37.99813 -35.72015 -35.30658 -34.18782 -33.46673 -31.67921 -30.03021 -29.24179 -28.19436 -27.40898 -26.59583 -24.14261 -23.93367 -23.16637 -22.25128 -21.45257 -20.48678 -18.76771 -18.32543 -17.74131 -17.67624 -17.25847 -16.99292 -16.71548 -16.48815 -16.04845 -15.91617 -15.65250 -15.39110 -14.85869 -14.65676 -14.45659 -14.21498 -14.17213 -13.99436 -13.72143 -13.63313 -13.50384 -13.35677 -12.89681 -12.86082 -12.82505 -12.61889 -12.51848 -12.34059 -12.25335 -11.98069 -11.80136 -11.49050 -11.06228 -10.88055 -10.45463 -10.38586 -10.30758 -10.06919 -9.88406 -9.00498 -7.95499 -5.29184 0.17352 0.35413 1.47643 1.48835 1.58620 1.59955 2.06959 2.43194 2.85790 2.94912 3.25695 3.37306 3.51043 3.55646 3.63540 3.67616 3.71435 3.83971 3.92113 4.00720 4.04866 4.10432 4.17213 4.50004 4.52106 4.62563 4.65675 4.67553 4.73000 4.74676 4.75966 4.81870 4.89088 4.91533 4.94409 4.96869 5.06526 5.08061 5.14808 5.21178 5.42320 5.42916 5.44610 5.82950 5.83306 6.05867 6.52335 6.86168 7.06517 7.22319 7.54435 8.54103 9.23574 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022276 B = 0.002290 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.631250 B =12224.577141 C =12644.932011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.039 4.039 3 C -0.178 4.178 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.129 4.129 8 C -0.094 4.094 9 C 0.518 3.482 10 O -0.574 6.574 11 N -0.706 5.706 12 C 0.126 3.874 13 H 0.096 0.904 14 C 0.039 3.961 15 O -0.374 6.374 16 C 0.071 3.929 17 C 0.121 3.879 18 N -0.626 5.626 19 C -0.230 4.230 20 H 0.089 0.911 21 C -0.063 4.063 22 N -0.952 5.952 23 Si 0.983 3.017 24 H -0.290 1.290 25 H -0.264 1.264 26 H -0.291 1.291 27 C 0.155 3.845 28 C -0.106 4.106 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.418 0.582 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.251 0.749 43 H 0.008 0.992 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 19.917 10.029 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.197 4.197 4 C -0.072 4.072 5 N -0.230 5.230 6 C -0.061 4.061 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.306 3.694 10 O -0.453 6.453 11 N -0.360 5.360 12 C 0.020 3.980 13 H 0.114 0.886 14 C -0.039 4.039 15 O -0.291 6.291 16 C 0.030 3.970 17 C -0.005 4.005 18 N -0.354 5.354 19 C -0.357 4.357 20 H 0.107 0.893 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.217 1.217 25 H -0.189 1.189 26 H -0.217 1.217 27 C 0.029 3.971 28 C -0.144 4.144 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.192 0.808 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.256 0.744 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.062 0.938 45 H 0.107 0.893 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.429 20.173 9.294 24.538 hybrid contribution -1.373 -1.413 0.222 1.983 sum 9.056 18.760 9.516 22.902 Atomic orbital electron populations 1.20899 0.88947 1.03653 1.03882 1.20537 0.97870 0.92660 0.93588 1.22313 0.95481 0.99536 1.02409 1.23162 0.92641 0.96530 0.94844 1.67667 1.42196 0.99358 1.13753 1.22899 0.91637 0.96653 0.94939 1.20358 0.94802 0.95245 1.02686 1.20675 1.04051 0.95510 0.93101 1.21021 0.76247 0.80176 0.91916 1.90735 1.54684 1.52135 1.47733 1.45843 1.58543 1.23210 1.08407 1.22340 0.96949 0.93737 0.84975 0.88569 1.24032 0.94164 0.94290 0.91403 1.88767 1.78294 1.17483 1.44594 1.23372 0.94785 0.82292 0.96573 1.22564 0.98556 0.86312 0.93020 1.45712 1.55769 1.02039 1.31900 1.19321 1.18452 0.80980 1.16979 0.89300 1.25699 0.97420 1.02580 0.99948 1.70038 1.24407 1.36969 1.28623 0.85008 0.78161 0.79071 0.76740 1.21708 1.18877 1.21693 1.22312 0.93007 0.85060 0.96735 1.22498 0.96817 0.94585 1.00537 0.88334 0.90283 0.91770 0.82470 0.80836 0.81979 0.84860 0.84757 0.74412 0.91031 0.88197 0.91552 0.94572 0.94034 0.97411 0.93822 0.89350 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.31 71.24 0.66 -0.74 16 2 C -0.04 -0.64 5.92 -19.67 -0.12 -0.75 16 3 C -0.18 -2.75 9.82 22.36 0.22 -2.53 16 4 C 0.08 1.50 11.18 84.67 0.95 2.44 16 5 N -0.52 -11.66 10.36 -195.84 -2.03 -13.69 16 6 C 0.10 1.90 10.84 84.69 0.92 2.82 16 7 C -0.13 -2.25 4.39 -19.77 -0.09 -2.33 16 8 C -0.09 -1.15 5.18 29.10 0.15 -1.00 16 9 C 0.52 10.18 7.15 87.66 0.63 10.80 16 10 O -0.57 -16.53 15.68 -3.03 -0.05 -16.58 16 11 N -0.71 -12.94 5.20 -435.93 -2.27 -15.21 16 12 C 0.13 3.12 3.51 46.39 0.16 3.28 16 13 H 0.10 2.63 7.54 -2.39 -0.02 2.61 16 14 C 0.04 1.05 7.42 72.69 0.54 1.59 16 15 O -0.37 -13.23 11.32 -148.98 -1.69 -14.91 16 16 C 0.07 2.65 1.66 -10.82 -0.02 2.63 16 17 C 0.12 5.06 8.20 83.40 0.68 5.74 16 18 N -0.63 -31.96 3.73 -739.12 -2.75 -34.72 16 19 C -0.23 -12.60 10.73 84.04 0.90 -11.70 16 20 H 0.09 4.63 7.84 -2.91 -0.02 4.61 16 21 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 22 N -0.95 -56.20 11.82 21.65 0.26 -55.95 16 23 Si 0.98 44.24 29.56 68.60 2.03 46.27 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 27 C 0.16 7.39 6.73 83.49 0.56 7.96 16 28 C -0.11 -3.13 6.20 31.40 0.19 -2.94 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.06 0.87 6.36 -2.39 -0.02 0.85 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 33 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 34 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.13 0.96 7.10 -2.39 -0.02 0.95 16 36 H 0.13 0.97 8.06 -2.39 -0.02 0.95 16 37 H 0.42 5.56 8.41 -92.71 -0.78 4.78 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.50 7.91 -2.38 -0.02 2.48 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.04 2.20 7.40 -2.39 -0.02 2.18 16 45 H 0.09 2.61 7.45 -2.39 -0.02 2.59 16 46 H 0.09 2.61 7.82 -2.39 -0.02 2.59 16 Total: -1.00 -76.13 379.90 0.53 -75.59 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.22 Total: 16.95 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.82 Total: 12.24 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -6.79 Total: -119.56 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -1.73 Total: -31.49 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -76.13 0.53 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053832596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.106 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds