Wall clock time and date at job start Tue Mar 31 2020 17:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38671 * 120.78923 * 2 1 4 4 C 1.38175 * 119.16350 * 180.23411 * 3 2 1 5 5 N 1.31887 * 120.76477 * 359.79105 * 4 3 2 6 6 C 1.31853 * 121.72503 * 359.97438 * 5 4 3 7 7 C 1.38225 * 120.76558 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.41980 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47461 * 265.00345 * 8 7 6 10 10 O 1.21283 * 119.99923 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00085 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.97616 * 322.30959 * 12 11 9 14 14 C 1.55021 * 111.10467 * 86.45467 * 12 11 9 15 15 O 1.43911 * 105.18234 * 81.95610 * 14 12 11 16 16 C 1.42391 * 109.55584 * 24.29253 * 15 14 12 17 17 C 1.52707 * 116.14328 * 129.84680 * 16 15 14 18 18 N 1.47219 * 87.79334 * 90.70657 * 17 16 15 19 19 C 1.36931 * 135.97128 * 206.43699 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72306 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.47216 * 88.05150 * 26.69097 * 18 17 16 28 28 C 1.53659 * 108.53510 * 358.08998 * 16 15 14 29 29 H 1.09001 * 109.47105 * 270.24329 * 1 2 3 30 30 H 1.08994 * 109.47148 * 30.24489 * 1 2 3 31 31 H 1.09002 * 109.46863 * 150.24707 * 1 2 3 32 32 H 1.08008 * 120.41458 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.62252 * 179.77358 * 4 3 2 34 34 H 1.08004 * 119.61336 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47312 * 144.99778 * 8 7 6 36 36 H 1.09002 * 109.47078 * 25.00093 * 8 7 6 37 37 H 0.97000 * 119.99887 * 359.97438 * 11 9 8 38 38 H 1.09000 * 110.29717 * 323.03184 * 14 12 11 39 39 H 1.08999 * 110.30468 * 200.88599 * 14 12 11 40 40 H 1.08999 * 113.49372 * 335.97682 * 17 16 15 41 41 H 1.08994 * 113.55796 * 205.44429 * 17 16 15 42 42 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 43 43 H 1.09003 * 113.49350 * 88.04070 * 27 18 17 44 44 H 1.08998 * 113.49476 * 218.57645 * 27 18 17 45 45 H 1.09006 * 110.93065 * 97.29560 * 28 16 15 46 46 H 1.08997 * 110.93072 * 220.95444 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0049 5 7 4.2403 0.0001 -0.0055 6 6 3.5983 -1.1516 -0.0008 7 6 2.2166 -1.1909 0.0053 8 6 1.4909 -2.5116 0.0111 9 6 1.1343 -2.8951 -1.4020 10 8 1.4390 -2.1674 -2.3231 11 7 0.4758 -4.0463 -1.6420 12 6 0.1287 -4.4189 -3.0156 13 1 -0.1625 -3.5432 -3.5957 14 6 1.2941 -5.1789 -3.6993 15 8 1.1708 -6.5406 -3.2502 16 6 -0.1773 -6.7969 -2.8699 17 6 -0.8183 -8.0482 -3.4659 18 7 -0.3362 -8.7873 -2.2875 19 6 0.0002 -10.0851 -2.0091 20 1 -0.0697 -10.8384 -2.7799 21 6 0.4372 -10.4314 -0.7378 22 7 0.5229 -9.5134 0.2013 23 14 0.9035 -12.2004 -0.3602 24 1 2.3476 -12.4025 -0.6413 25 1 0.6327 -12.4890 1.0711 26 1 0.1008 -13.1162 -1.2102 27 6 -0.3803 -7.5211 -1.5378 28 6 -0.9869 -5.5017 -3.0381 29 1 -0.3633 0.0044 1.0277 30 1 -0.3633 0.8877 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 1.6966 2.1378 -0.0004 33 1 4.1583 2.0754 -0.0087 34 1 4.1586 -2.0749 -0.0019 35 1 0.5808 -2.4234 0.6044 36 1 2.1341 -3.2777 0.4442 37 1 0.2318 -4.6282 -0.9053 38 1 2.2518 -4.7629 -3.3867 39 1 1.1945 -5.1278 -4.7835 40 1 -0.3569 -8.3701 -4.3995 41 1 -1.9050 -7.9929 -3.5295 42 1 0.8279 -9.7555 1.0898 43 1 -1.3483 -7.3219 -1.0780 44 1 0.4507 -7.3980 -0.8434 45 1 -1.5171 -5.4949 -3.9905 46 1 -1.6794 -5.3647 -2.2076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053832597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:45 Heat of formation + Delta-G solvation = 18.150478 kcal Electronic energy + Delta-G solvation = -28370.633497 eV Core-core repulsion = 24455.422878 eV Total energy + Delta-G solvation = -3915.210619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.83018 -40.18701 -38.96882 -36.33853 -34.58724 -34.23869 -32.70160 -32.14639 -30.69304 -28.77736 -28.20037 -27.36857 -25.72361 -24.80227 -23.28734 -22.45380 -21.93434 -21.13383 -20.38098 -19.06337 -17.26200 -17.00392 -16.90804 -16.64208 -16.44045 -15.55245 -15.30138 -15.03645 -14.82012 -14.56875 -14.35834 -14.08677 -13.59248 -13.52558 -13.30819 -13.21026 -13.07227 -12.96447 -12.85938 -12.83255 -12.21122 -12.09256 -11.60740 -11.55808 -11.44854 -11.40167 -11.11798 -10.84889 -10.50736 -10.32812 -9.99037 -9.83970 -9.60502 -9.57376 -9.52255 -9.16633 -9.10227 -8.84946 -8.58923 -6.89526 -5.77331 -3.08219 0.93518 1.10311 2.54659 3.08373 3.39995 3.44563 3.46032 3.67869 4.13712 4.23236 4.43328 4.44786 4.48553 4.52017 4.65583 4.74568 4.85066 4.99567 5.03362 5.11547 5.18940 5.21654 5.27166 5.28419 5.34316 5.40053 5.44901 5.56316 5.60281 5.73225 5.82337 5.85834 5.88083 5.89878 6.01027 6.14520 6.34860 6.44984 6.51741 6.54932 6.58997 6.86996 7.14646 7.44852 7.50254 7.77071 7.83925 7.97843 8.15597 9.03373 9.70243 10.62106 11.40778 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002653 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.650963 B =10550.169703 C =11319.518026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.176 4.176 4 C 0.097 3.903 5 N -0.489 5.489 6 C 0.116 3.884 7 C -0.116 4.116 8 C -0.103 4.103 9 C 0.518 3.482 10 O -0.537 6.537 11 N -0.713 5.713 12 C 0.113 3.887 13 H 0.102 0.898 14 C 0.039 3.961 15 O -0.334 6.334 16 C 0.053 3.947 17 C 0.110 3.890 18 N -0.602 5.602 19 C -0.213 4.213 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.153 3.847 28 C -0.144 4.144 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.408 0.592 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.253 0.747 43 H 0.034 0.966 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 21.038 -0.154 21.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.034 4.034 3 C -0.196 4.196 4 C -0.060 4.060 5 N -0.197 5.197 6 C -0.041 4.041 7 C -0.118 4.118 8 C -0.143 4.143 9 C 0.304 3.696 10 O -0.414 6.414 11 N -0.365 5.365 12 C 0.007 3.993 13 H 0.120 0.880 14 C -0.039 4.039 15 O -0.252 6.252 16 C 0.012 3.988 17 C -0.017 4.017 18 N -0.327 5.327 19 C -0.340 4.340 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.027 3.973 28 C -0.183 4.183 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.244 0.756 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.095 0.905 45 H 0.109 0.891 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.912 21.097 -0.609 21.125 hybrid contribution -0.999 -1.150 0.557 1.621 sum -1.911 19.947 -0.053 20.038 Atomic orbital electron populations 1.20852 0.90435 1.03604 1.02615 1.20133 0.96624 0.92459 0.94198 1.21974 0.95633 0.98423 1.03528 1.22712 0.91772 0.96252 0.95215 1.67688 1.41097 0.98437 1.12521 1.22651 0.90913 0.96388 0.94161 1.20167 0.94960 0.94174 1.02487 1.20630 1.02621 0.95765 0.95317 1.20433 0.77438 0.80773 0.90969 1.90721 1.53076 1.51683 1.45939 1.45922 1.58665 1.22570 1.09296 1.22551 0.95170 0.98106 0.83436 0.88023 1.23836 0.98968 0.83000 0.98069 1.88464 1.26051 1.26644 1.84074 1.23489 0.82117 0.92533 1.00657 1.22710 0.96104 0.89585 0.93286 1.45381 1.75430 1.04618 1.07267 1.18906 1.36980 0.82426 0.95719 0.90131 1.24761 1.01902 0.97973 0.95829 1.69803 1.52518 1.31729 1.02795 0.86098 0.78411 0.83870 0.77248 1.21497 1.21653 1.20706 1.22419 0.99248 0.83483 0.92155 1.23224 0.97552 0.93614 1.03889 0.90391 0.90928 0.91054 0.84960 0.82949 0.82833 0.87498 0.87090 0.75644 0.89939 0.91724 0.93592 0.93957 0.93741 0.94827 0.90473 0.89138 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 9.31 36.01 0.34 -0.57 16 2 C -0.03 -0.26 5.92 -104.32 -0.62 -0.88 16 3 C -0.18 -1.62 9.82 -39.44 -0.39 -2.01 16 4 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 5 N -0.49 -6.12 10.36 -13.25 -0.14 -6.26 16 6 C 0.12 1.37 10.84 -17.55 -0.19 1.18 16 7 C -0.12 -1.26 4.39 -104.49 -0.46 -1.71 16 8 C -0.10 -0.97 5.17 -29.04 -0.15 -1.12 16 9 C 0.52 6.31 7.13 -10.99 -0.08 6.23 16 10 O -0.54 -8.35 15.79 5.55 0.09 -8.27 16 11 N -0.71 -8.48 5.24 -51.50 -0.27 -8.75 16 12 C 0.11 1.43 3.37 -65.54 -0.22 1.21 16 13 H 0.10 1.22 7.74 -51.93 -0.40 0.82 16 14 C 0.04 0.59 7.49 38.23 0.29 0.88 16 15 O -0.33 -6.55 11.18 -35.23 -0.39 -6.95 16 16 C 0.05 0.97 1.75 -90.45 -0.16 0.81 16 17 C 0.11 2.24 8.20 -8.06 -0.07 2.17 16 18 N -0.60 -15.51 3.78 -184.57 -0.70 -16.21 16 19 C -0.21 -6.05 10.74 -15.06 -0.16 -6.21 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -26.96 11.51 55.49 0.64 -26.33 16 23 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 C 0.15 3.41 6.89 -7.92 -0.05 3.36 16 28 C -0.14 -1.85 5.97 -25.07 -0.15 -2.00 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 32 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.11 0.76 7.11 -51.93 -0.37 0.39 16 36 H 0.11 0.91 8.06 -51.93 -0.42 0.49 16 37 H 0.41 4.59 8.62 -40.82 -0.35 4.24 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.79 8.13 -51.93 -0.42 0.36 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.73 7.95 -51.93 -0.41 0.31 16 44 H 0.08 1.94 7.13 -51.93 -0.37 1.57 16 45 H 0.09 1.01 8.13 -51.93 -0.42 0.58 16 46 H 0.09 1.04 7.81 -51.93 -0.41 0.64 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -35.78 380.42 -9.26 -45.04 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.83 Total: 2.97 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.36 Total: 1.80 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.47 Total: -57.55 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.31 Total: -15.21 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.78 -9.26 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053832597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.191 kcal (2) G-P(sol) polarization free energy of solvation -35.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds