Wall clock time and date at job start Tue Mar 31 2020 17:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38671 * 120.78923 * 2 1 4 4 C 1.38175 * 119.16350 * 180.23411 * 3 2 1 5 5 N 1.31887 * 120.76477 * 359.79105 * 4 3 2 6 6 C 1.31853 * 121.72503 * 359.97438 * 5 4 3 7 7 C 1.38225 * 120.76558 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.41980 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47461 * 265.00345 * 8 7 6 10 10 O 1.21283 * 119.99923 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00085 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99973 * 179.97438 * 11 9 8 13 13 H 1.08994 * 110.97616 * 322.30959 * 12 11 9 14 14 C 1.55021 * 111.10467 * 86.45467 * 12 11 9 15 15 O 1.43911 * 105.18234 * 81.95610 * 14 12 11 16 16 C 1.42391 * 109.55584 * 24.29253 * 15 14 12 17 17 C 1.52707 * 116.14328 * 129.84680 * 16 15 14 18 18 N 1.47219 * 87.79334 * 90.70657 * 17 16 15 19 19 C 1.36931 * 135.97128 * 206.43699 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72306 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.47216 * 88.05150 * 26.69097 * 18 17 16 28 28 C 1.53659 * 108.53510 * 358.08998 * 16 15 14 29 29 H 1.09001 * 109.47105 * 270.24329 * 1 2 3 30 30 H 1.08994 * 109.47148 * 30.24489 * 1 2 3 31 31 H 1.09002 * 109.46863 * 150.24707 * 1 2 3 32 32 H 1.08008 * 120.41458 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.62252 * 179.77358 * 4 3 2 34 34 H 1.08004 * 119.61336 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47312 * 144.99778 * 8 7 6 36 36 H 1.09002 * 109.47078 * 25.00093 * 8 7 6 37 37 H 0.97000 * 119.99887 * 359.97438 * 11 9 8 38 38 H 1.09000 * 110.29717 * 323.03184 * 14 12 11 39 39 H 1.08999 * 110.30468 * 200.88599 * 14 12 11 40 40 H 1.08999 * 113.49372 * 335.97682 * 17 16 15 41 41 H 1.08994 * 113.55796 * 205.44429 * 17 16 15 42 42 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 43 43 H 1.09003 * 113.49350 * 88.04070 * 27 18 17 44 44 H 1.08998 * 113.49476 * 218.57645 * 27 18 17 45 45 H 1.09006 * 110.93065 * 97.29560 * 28 16 15 46 46 H 1.08997 * 110.93072 * 220.95444 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0049 5 7 4.2403 0.0001 -0.0055 6 6 3.5983 -1.1516 -0.0008 7 6 2.2166 -1.1909 0.0053 8 6 1.4909 -2.5116 0.0111 9 6 1.1343 -2.8951 -1.4020 10 8 1.4390 -2.1674 -2.3231 11 7 0.4758 -4.0463 -1.6420 12 6 0.1287 -4.4189 -3.0156 13 1 -0.1625 -3.5432 -3.5957 14 6 1.2941 -5.1789 -3.6993 15 8 1.1708 -6.5406 -3.2502 16 6 -0.1773 -6.7969 -2.8699 17 6 -0.8183 -8.0482 -3.4659 18 7 -0.3362 -8.7873 -2.2875 19 6 0.0002 -10.0851 -2.0091 20 1 -0.0697 -10.8384 -2.7799 21 6 0.4372 -10.4314 -0.7378 22 7 0.5229 -9.5134 0.2013 23 14 0.9035 -12.2004 -0.3602 24 1 2.3476 -12.4025 -0.6413 25 1 0.6327 -12.4890 1.0711 26 1 0.1008 -13.1162 -1.2102 27 6 -0.3803 -7.5211 -1.5378 28 6 -0.9869 -5.5017 -3.0381 29 1 -0.3633 0.0044 1.0277 30 1 -0.3633 0.8877 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 1.6966 2.1378 -0.0004 33 1 4.1583 2.0754 -0.0087 34 1 4.1586 -2.0749 -0.0019 35 1 0.5808 -2.4234 0.6044 36 1 2.1341 -3.2777 0.4442 37 1 0.2318 -4.6282 -0.9053 38 1 2.2518 -4.7629 -3.3867 39 1 1.1945 -5.1278 -4.7835 40 1 -0.3569 -8.3701 -4.3995 41 1 -1.9050 -7.9929 -3.5295 42 1 0.8279 -9.7555 1.0898 43 1 -1.3483 -7.3219 -1.0780 44 1 0.4507 -7.3980 -0.8434 45 1 -1.5171 -5.4949 -3.9905 46 1 -1.6794 -5.3647 -2.2076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053832597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:44 Heat of formation + Delta-G solvation = -7.413085 kcal Electronic energy + Delta-G solvation = -28371.742016 eV Core-core repulsion = 24455.422878 eV Total energy + Delta-G solvation = -3916.319138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81230 -41.30225 -40.08056 -37.87119 -35.47282 -35.28330 -34.16483 -33.46781 -31.84097 -30.08054 -29.24878 -28.19686 -27.32336 -26.48984 -24.22184 -23.74434 -23.08348 -22.17197 -21.35638 -20.55418 -18.73737 -18.20278 -17.85429 -17.72363 -17.29033 -16.99467 -16.64182 -16.23484 -16.05308 -15.71559 -15.58355 -15.34586 -14.95589 -14.71454 -14.61972 -14.26673 -14.20569 -13.72067 -13.68038 -13.59227 -13.51109 -13.16442 -13.00565 -12.92448 -12.80950 -12.62025 -12.52766 -12.28033 -12.23032 -11.92216 -11.54413 -11.34487 -11.01570 -10.92407 -10.40315 -10.37545 -10.30746 -9.93624 -9.89354 -8.89739 -7.89522 -5.20583 0.16606 0.34671 1.44683 1.47331 1.54999 1.59736 2.17132 2.47541 2.82126 2.88919 3.31145 3.37855 3.50315 3.62469 3.67127 3.70097 3.80212 3.84037 3.91893 4.01379 4.04224 4.07976 4.37592 4.48897 4.51389 4.61950 4.68347 4.70371 4.74436 4.76441 4.77138 4.78009 4.90459 4.93130 4.93540 5.04914 5.07238 5.18281 5.21316 5.30027 5.42419 5.48958 5.52731 5.82630 5.96017 6.36553 6.51949 6.93588 7.05459 7.20667 7.61424 8.62245 9.28058 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002653 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.650963 B =10550.169703 C =11319.518026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.175 4.175 4 C 0.084 3.916 5 N -0.520 5.520 6 C 0.092 3.908 7 C -0.127 4.127 8 C -0.098 4.098 9 C 0.521 3.479 10 O -0.572 6.572 11 N -0.711 5.711 12 C 0.121 3.879 13 H 0.118 0.882 14 C 0.035 3.965 15 O -0.372 6.372 16 C 0.075 3.925 17 C 0.107 3.893 18 N -0.642 5.642 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.066 4.066 22 N -0.948 5.948 23 Si 0.977 3.023 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.269 1.269 27 C 0.153 3.847 28 C -0.127 4.127 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.248 0.752 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.121 0.879 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 22.485 -0.566 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.072 4.072 5 N -0.229 5.229 6 C -0.064 4.064 7 C -0.129 4.129 8 C -0.138 4.138 9 C 0.309 3.691 10 O -0.451 6.451 11 N -0.362 5.362 12 C 0.016 3.984 13 H 0.136 0.864 14 C -0.043 4.043 15 O -0.291 6.291 16 C 0.034 3.966 17 C -0.019 4.019 18 N -0.367 5.367 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.260 4.260 22 N -0.597 5.597 23 Si 0.805 3.195 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.194 1.194 27 C 0.027 3.973 28 C -0.165 4.165 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.180 0.820 33 H 0.194 0.806 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.139 0.861 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.768 22.551 -1.043 22.744 hybrid contribution -0.393 -1.543 0.623 1.710 sum -3.161 21.008 -0.419 21.248 Atomic orbital electron populations 1.20897 0.88639 1.03786 1.03900 1.20540 0.98055 0.92376 0.93492 1.22327 0.95361 0.99538 1.02200 1.23208 0.92790 0.96418 0.94802 1.67660 1.42224 0.99312 1.13751 1.22804 0.91793 0.96530 0.95322 1.20315 0.94675 0.95214 1.02702 1.20666 1.03839 0.95429 0.93892 1.20817 0.76466 0.80203 0.91631 1.90703 1.54429 1.52744 1.47207 1.45960 1.58467 1.22532 1.09261 1.22501 0.93861 0.98292 0.83753 0.86387 1.24015 0.99529 0.81336 0.99395 1.88427 1.27168 1.29310 1.84228 1.23122 0.82478 0.94278 0.96771 1.22956 0.97630 0.89755 0.91522 1.45789 1.76177 1.04679 1.10096 1.19252 1.36466 0.84080 0.95841 0.90332 1.25573 1.02644 1.01842 0.95894 1.69975 1.53673 1.33287 1.02759 0.85103 0.77792 0.79654 0.76923 1.21723 1.21644 1.19418 1.22436 0.98154 0.83327 0.93395 1.23192 0.97072 0.89923 1.06355 0.88447 0.89837 0.91740 0.82011 0.80602 0.82867 0.84841 0.86265 0.75235 0.91174 0.89819 0.94106 0.91041 0.94302 0.93896 0.94287 0.86113 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.31 71.24 0.66 -0.80 16 2 C -0.04 -0.67 5.92 -19.67 -0.12 -0.79 16 3 C -0.17 -2.90 9.82 22.36 0.22 -2.68 16 4 C 0.08 1.64 11.18 84.67 0.95 2.58 16 5 N -0.52 -13.18 10.36 -195.84 -2.03 -15.21 16 6 C 0.09 2.23 10.84 84.69 0.92 3.15 16 7 C -0.13 -2.67 4.39 -19.78 -0.09 -2.76 16 8 C -0.10 -1.74 5.17 29.10 0.15 -1.59 16 9 C 0.52 12.10 7.13 87.66 0.62 12.73 16 10 O -0.57 -17.26 15.79 -3.04 -0.05 -17.31 16 11 N -0.71 -15.80 5.24 -435.25 -2.28 -18.08 16 12 C 0.12 2.78 3.37 46.54 0.16 2.94 16 13 H 0.12 2.44 7.74 -2.39 -0.02 2.42 16 14 C 0.03 1.00 7.49 72.67 0.54 1.54 16 15 O -0.37 -14.50 11.18 -148.98 -1.67 -16.16 16 16 C 0.07 2.61 1.75 -10.68 -0.02 2.59 16 17 C 0.11 4.22 8.20 83.39 0.68 4.90 16 18 N -0.64 -33.28 3.78 -738.92 -2.80 -36.07 16 19 C -0.23 -13.13 10.74 84.04 0.90 -12.23 16 20 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 22 N -0.95 -56.82 11.51 21.65 0.25 -56.57 16 23 Si 0.98 46.38 29.55 68.60 2.03 48.41 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 C 0.15 6.82 6.89 83.48 0.58 7.40 16 28 C -0.13 -2.83 5.97 31.67 0.19 -2.65 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.06 0.92 6.35 -2.39 -0.02 0.90 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.13 1.61 7.11 -2.39 -0.02 1.59 16 36 H 0.12 1.90 8.06 -2.39 -0.02 1.88 16 37 H 0.41 8.71 8.62 -92.71 -0.80 7.91 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.44 8.13 -2.39 -0.02 2.42 16 42 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 43 H 0.04 1.82 7.95 -2.39 -0.02 1.80 16 44 H 0.04 2.02 7.13 -2.39 -0.02 2.01 16 45 H 0.12 2.08 8.13 -2.38 -0.02 2.06 16 46 H 0.11 2.09 7.81 -2.39 -0.02 2.07 16 Total: -1.00 -80.01 380.42 0.47 -79.54 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.20 Total: 20.50 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 6.82 Total: 10.96 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -6.86 Total: -125.93 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.71 Total: -33.47 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -80.01 0.47 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053832597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.122 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds