Wall clock time and date at job start Tue Mar 31 2020 16:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38629 * 120.32608 * 2 1 4 4 C 1.38587 * 118.49008 * 179.73676 * 3 2 1 5 5 C 1.39309 * 119.05659 * 0.53587 * 4 3 2 6 6 C 1.48172 * 119.72454 * 179.70508 * 5 4 3 7 7 O 1.21513 * 119.99400 * 0.02562 * 6 5 4 8 8 N 1.34766 * 120.00192 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00255 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.45179 * 327.60111 * 9 8 6 11 11 C 1.54549 * 110.50820 * 90.34271 * 9 8 6 12 12 O 1.44634 * 105.03097 * 95.02371 * 11 9 8 13 13 C 1.43246 * 105.22587 * 39.02255 * 12 11 9 14 14 C 1.52887 * 115.83720 * 90.92637 * 13 12 11 15 15 N 1.47786 * 85.78324 * 94.51132 * 14 13 12 16 16 C 1.36942 * 134.40289 * 203.85272 * 15 14 13 17 17 H 1.07997 * 119.99548 * 180.02562 * 16 15 14 18 18 C 1.38813 * 120.00079 * 0.03225 * 16 15 14 19 19 N 1.31622 * 119.99945 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99971 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47166 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47018 * 119.99776 * 20 18 16 23 23 H 1.48503 * 109.46981 * 239.99688 * 20 18 16 24 24 C 1.47786 * 91.19503 * 23.87188 * 15 14 13 25 25 C 1.53468 * 106.26240 * 321.06740 * 13 12 11 26 26 N 1.32717 * 120.55413 * 359.72443 * 5 4 3 27 27 C 1.31522 * 121.64339 * 0.02562 * 26 5 4 28 28 C 1.50700 * 119.54698 * 179.97438 * 27 26 5 29 29 H 1.09002 * 109.47152 * 269.72295 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.72395 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.72376 * 1 2 3 32 32 H 1.08001 * 120.74937 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.47094 * 180.24278 * 4 3 2 34 34 H 0.97005 * 120.00578 * 359.97438 * 8 6 5 35 35 H 1.09001 * 110.32710 * 213.90495 * 11 9 8 36 36 H 1.08995 * 110.33284 * 336.13283 * 11 9 8 37 37 H 1.08995 * 113.82586 * 208.72906 * 14 13 12 38 38 H 1.09008 * 113.82340 * 340.29845 * 14 13 12 39 39 H 0.96992 * 120.00248 * 180.02562 * 19 18 16 40 40 H 1.08997 * 113.82282 * 221.90762 * 24 15 14 41 41 H 1.08998 * 113.81949 * 90.33871 * 24 15 14 42 42 H 1.08996 * 110.57406 * 264.15636 * 25 13 12 43 43 H 1.08999 * 110.57283 * 141.26717 * 25 13 12 44 44 H 1.09000 * 109.47248 * 270.02045 * 28 27 26 45 45 H 1.09004 * 109.47313 * 30.02144 * 28 27 26 46 46 H 1.09001 * 109.46876 * 150.01995 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2070 1.1966 0.0000 4 6 3.5921 1.1522 0.0056 5 6 4.2294 -0.0866 -0.0004 6 6 5.7097 -0.1513 -0.0012 7 8 6.3625 0.8736 0.0039 8 7 6.3320 -1.3466 -0.0075 9 6 7.7956 -1.4106 -0.0088 10 1 8.2134 -0.5631 -0.5521 11 6 8.3371 -1.4500 1.4382 12 8 8.5222 -2.8542 1.7313 13 6 9.0321 -3.4270 0.5214 14 6 10.5549 -3.4565 0.3881 15 7 10.4669 -4.8275 0.9328 16 6 11.3345 -5.6513 1.5990 17 1 11.0184 -6.6398 1.8981 18 6 12.6201 -5.2159 1.8900 19 7 13.0053 -4.0114 1.5251 20 14 13.8033 -6.3395 2.7994 21 1 13.1314 -7.6302 3.0956 22 1 14.9997 -6.5859 1.9550 23 1 14.2191 -5.6951 4.0711 24 6 9.0689 -4.9546 0.4708 25 6 8.2795 -2.7435 -0.6282 26 7 3.5217 -1.2093 -0.0058 27 6 2.2066 -1.1960 -0.0062 28 6 1.4502 -2.4994 -0.0131 29 1 -0.3633 -0.0050 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3633 0.8925 -0.5096 32 1 1.6846 2.1419 -0.0004 33 1 4.1693 2.0650 0.0097 34 1 5.8109 -2.1648 -0.0111 35 1 9.2884 -0.9215 1.5010 36 1 7.6135 -1.0119 2.1255 37 1 10.9076 -3.4138 -0.6423 38 1 11.0680 -2.7539 1.0450 39 1 13.9036 -3.7073 1.7280 40 1 8.4086 -5.4350 1.1927 41 1 8.9730 -5.3641 -0.5348 42 1 7.4305 -3.3496 -0.9441 43 1 8.9502 -2.5551 -1.4665 44 1 1.2685 -2.8087 -1.0424 45 1 2.0372 -3.2629 0.4975 46 1 0.4977 -2.3694 0.5008 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053870129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:03 Heat of formation + Delta-G solvation = 15.927887 kcal Electronic energy + Delta-G solvation = -27911.243693 eV Core-core repulsion = 23995.936695 eV Total energy + Delta-G solvation = -3915.306998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.06350 -40.08644 -38.89470 -36.12927 -34.51223 -34.14169 -33.35690 -32.04720 -30.51820 -28.80199 -28.23351 -27.44482 -25.83866 -24.86299 -23.73251 -22.78365 -21.96640 -21.02486 -20.55758 -18.94125 -18.28061 -17.03236 -16.68670 -16.22779 -15.63089 -15.51765 -15.28330 -15.10204 -15.02814 -14.60220 -14.30172 -14.09655 -13.66944 -13.57832 -13.36987 -13.31565 -13.09059 -12.94383 -12.76239 -12.56384 -12.51398 -11.96288 -11.83982 -11.50727 -11.43662 -11.18991 -11.06564 -10.83402 -10.57895 -10.39337 -10.22448 -10.14859 -9.78292 -9.71600 -9.48590 -9.27931 -9.11720 -8.78795 -8.66174 -6.83288 -5.70747 -3.02453 0.32229 0.85139 2.52091 2.97487 3.43365 3.48191 3.51104 3.54433 3.75650 4.23629 4.30384 4.37046 4.43681 4.50741 4.57221 4.73712 4.90070 5.06019 5.08285 5.09240 5.20252 5.21952 5.23323 5.24525 5.29736 5.37590 5.46533 5.53039 5.63411 5.67483 5.69243 5.81655 5.87685 6.01173 6.06069 6.11497 6.24373 6.38770 6.49567 6.53177 6.64016 6.99922 7.24661 7.30028 7.53531 7.58562 7.72115 8.03476 8.08962 9.09902 9.76307 10.63316 11.46785 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.027123 B = 0.002264 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.089936 B =12362.442655 C =12977.378539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C -0.082 4.082 4 C -0.114 4.114 5 C 0.080 3.920 6 C 0.570 3.430 7 O -0.535 6.535 8 N -0.695 5.695 9 C 0.110 3.890 10 H 0.105 0.895 11 C 0.039 3.961 12 O -0.336 6.336 13 C 0.055 3.945 14 C 0.152 3.848 15 N -0.606 5.606 16 C -0.218 4.218 17 H 0.081 0.919 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.130 3.870 25 C -0.145 4.145 26 N -0.454 5.454 27 C 0.126 3.874 28 C -0.107 4.107 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.121 9.704 -6.260 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.120 4.120 3 C -0.108 4.108 4 C -0.134 4.134 5 C -0.059 4.059 6 C 0.355 3.645 7 O -0.412 6.412 8 N -0.346 5.346 9 C 0.005 3.995 10 H 0.123 0.877 11 C -0.039 4.039 12 O -0.255 6.255 13 C 0.014 3.986 14 C 0.026 3.974 15 N -0.332 5.332 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.004 3.996 25 C -0.184 4.184 26 N -0.166 5.166 27 C -0.014 4.014 28 C -0.164 4.164 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.249 0.751 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.870 9.409 -5.893 28.152 hybrid contribution 0.154 0.053 0.247 0.296 sum -25.716 9.463 -5.645 27.978 Atomic orbital electron populations 1.20840 0.89844 1.03531 1.02967 1.20973 0.97809 0.93579 0.99619 1.21511 0.93610 0.98431 0.97237 1.22109 0.94899 0.99059 0.97376 1.21124 0.94137 0.89633 1.00969 1.17891 0.85788 0.84076 0.76790 1.90791 1.65836 1.34151 1.50409 1.45969 1.07266 1.08596 1.72754 1.22537 0.79257 0.99930 0.97794 0.87733 1.23798 1.00472 0.84930 0.94726 1.89017 1.84270 1.19273 1.32890 1.23779 0.96528 0.95461 0.82811 1.22610 0.89032 0.88699 0.97026 1.45854 1.09143 1.14224 1.63960 1.19043 0.91966 0.95819 1.27720 0.90157 1.24777 0.97246 0.97109 1.01463 1.69819 1.18470 1.17327 1.51321 0.86035 0.80967 0.79595 0.79107 1.20470 1.21816 1.21728 1.22502 0.88573 0.90998 0.97518 1.23076 1.01000 0.94644 0.99721 1.67378 1.08152 1.30414 1.10668 1.21177 0.89097 0.95341 0.95826 1.20789 0.99304 0.92966 1.03369 0.90426 0.90588 0.91029 0.84070 0.83354 0.75118 0.91069 0.89575 0.94658 0.90373 0.93748 0.92970 0.93499 0.90137 0.89136 0.90129 0.89972 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 9.20 36.01 0.33 -0.12 16 2 C -0.12 -0.85 5.91 -104.36 -0.62 -1.47 16 3 C -0.08 -0.62 9.85 -39.31 -0.39 -1.00 16 4 C -0.11 -1.14 9.63 -39.05 -0.38 -1.51 16 5 C 0.08 0.96 6.75 -83.01 -0.56 0.40 16 6 C 0.57 8.00 7.81 -12.18 -0.10 7.91 16 7 O -0.54 -8.80 15.97 5.35 0.09 -8.71 16 8 N -0.69 -9.29 5.07 -52.97 -0.27 -9.56 16 9 C 0.11 1.60 3.49 -66.20 -0.23 1.37 16 10 H 0.10 1.52 7.55 -51.93 -0.39 1.13 16 11 C 0.04 0.66 7.37 37.97 0.28 0.94 16 12 O -0.34 -6.93 11.44 -35.23 -0.40 -7.33 16 13 C 0.06 1.09 1.28 -90.66 -0.12 0.97 16 14 C 0.15 3.66 6.99 -3.40 -0.02 3.63 16 15 N -0.61 -16.14 3.71 -183.58 -0.68 -16.82 16 16 C -0.22 -6.33 10.70 -15.06 -0.16 -6.50 16 17 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.92 -28.10 11.40 55.49 0.63 -27.47 16 20 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 C 0.13 2.74 8.47 -3.40 -0.03 2.72 16 25 C -0.15 -2.15 6.25 -25.57 -0.16 -2.31 16 26 N -0.45 -5.12 9.45 -6.06 -0.06 -5.18 16 27 C 0.13 1.12 6.78 -82.61 -0.56 0.56 16 28 C -0.11 -0.64 9.36 36.01 0.34 -0.30 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.23 6.71 -51.93 -0.35 -0.12 16 31 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 34 H 0.41 5.11 7.72 -40.82 -0.32 4.80 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 37 H 0.04 0.84 7.96 -51.93 -0.41 0.42 16 38 H 0.08 2.12 7.20 -51.92 -0.37 1.74 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.04 7.69 -51.93 -0.40 0.65 16 43 H 0.09 1.26 7.83 -51.93 -0.41 0.85 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.31 6.68 -51.93 -0.35 -0.04 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -35.36 379.43 -9.20 -44.56 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.74 Total: 2.12 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.46 Total: 4.90 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.37 Total: -59.02 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.32 Total: -16.04 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.36 -9.20 -44.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053870129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.487 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds