Wall clock time and date at job start Tue Mar 31 2020 17:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38610 * 120.32370 * 2 1 4 4 N 1.31495 * 120.89969 * 179.76192 * 3 2 1 5 5 C 1.32741 * 121.64317 * 0.53296 * 4 3 2 6 6 C 1.48171 * 119.72152 * 179.74965 * 5 4 3 7 7 O 1.21516 * 119.99763 * 173.94147 * 6 5 4 8 8 N 1.34776 * 119.99717 * 353.93674 * 6 5 4 9 9 C 1.46504 * 119.99437 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.45885 * 327.60384 * 9 8 6 11 11 C 1.54551 * 110.50552 * 90.34983 * 9 8 6 12 12 O 1.44636 * 105.03350 * 95.01623 * 11 9 8 13 13 C 1.43245 * 105.22497 * 39.02508 * 12 11 9 14 14 C 1.52881 * 115.83871 * 90.92501 * 13 12 11 15 15 N 1.47781 * 85.78086 * 94.51160 * 14 13 12 16 16 C 1.36938 * 134.39838 * 203.86871 * 15 14 13 17 17 H 1.08010 * 119.99646 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00371 * 0.02562 * 16 15 14 19 19 N 1.31619 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47464 * 89.99206 * 20 18 16 22 22 H 1.48498 * 109.46967 * 209.99759 * 20 18 16 23 23 H 1.48507 * 109.46769 * 329.99415 * 20 18 16 24 24 C 1.47781 * 91.19624 * 23.87595 * 15 14 13 25 25 C 1.53470 * 106.25742 * 321.06521 * 13 12 11 26 26 C 1.39270 * 120.55491 * 359.47295 * 5 4 3 27 27 C 1.50699 * 120.47081 * 180.27829 * 26 5 4 28 28 C 1.38577 * 120.32574 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46973 * 269.97565 * 1 2 3 30 30 H 1.09003 * 109.47168 * 29.97045 * 1 2 3 31 31 H 1.08994 * 109.47460 * 149.97380 * 1 2 3 32 32 H 1.08004 * 119.54318 * 0.02855 * 3 2 1 33 33 H 0.97000 * 120.00333 * 359.72280 * 8 6 5 34 34 H 1.09007 * 110.32833 * 213.90490 * 11 9 8 35 35 H 1.08998 * 110.33177 * 336.12035 * 11 9 8 36 36 H 1.09003 * 113.82290 * 208.72636 * 14 13 12 37 37 H 1.09006 * 113.82431 * 340.29549 * 14 13 12 38 38 H 0.97003 * 119.99735 * 180.02562 * 19 18 16 39 39 H 1.09005 * 113.81898 * 221.90801 * 24 15 14 40 40 H 1.09002 * 113.82675 * 90.34181 * 24 15 14 41 41 H 1.09002 * 110.57719 * 264.15166 * 25 13 12 42 42 H 1.09003 * 110.70328 * 141.33777 * 25 13 12 43 43 H 1.08997 * 109.47258 * 83.27621 * 27 26 5 44 44 H 1.09002 * 109.47559 * 203.28154 * 27 26 5 45 45 H 1.09001 * 109.46899 * 323.27845 * 27 26 5 46 46 H 1.08003 * 120.75720 * 359.95832 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0047 5 6 4.2294 0.0867 -0.0009 6 6 5.7097 0.1513 -0.0009 7 8 6.3623 -0.8682 0.1051 8 7 6.3323 1.3409 -0.1185 9 6 7.7959 1.4047 -0.1180 10 1 8.2113 0.6195 0.5136 11 6 8.3433 1.2911 -1.5588 12 8 8.5300 2.6565 -1.9980 13 6 9.0351 3.3541 -0.8534 14 6 10.5573 3.3977 -0.7178 15 7 10.4719 4.7034 -1.4047 16 6 11.3423 5.4521 -2.1510 17 1 11.0278 6.4035 -2.5542 18 6 12.6288 4.9885 -2.3892 19 7 13.0123 3.8294 -1.8974 20 14 13.8164 6.0102 -3.4067 21 1 14.5768 6.9208 -2.5136 22 1 14.7607 5.1106 -4.1167 23 1 13.0555 6.8116 -4.3988 24 6 9.0721 4.8784 -0.9643 25 6 8.2776 2.7957 0.3589 26 6 3.5923 -1.1517 -0.0010 27 6 4.3977 -2.4254 -0.0011 28 6 2.2067 -1.1961 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6646 2.1305 0.0005 33 1 5.8113 2.1543 -0.2072 34 1 9.2947 0.7590 -1.5615 35 1 7.6224 0.7826 -2.1988 36 1 10.9058 3.4643 0.3128 37 1 11.0729 2.6297 -1.2945 38 1 13.9114 3.5056 -2.0637 39 1 8.4148 5.2797 -1.7358 40 1 8.9722 5.3920 -0.0081 41 1 7.4275 3.4317 0.6056 42 1 8.9426 2.6973 1.2170 43 1 4.6935 -2.6683 1.0194 44 1 3.7940 -3.2371 -0.4074 45 1 5.2881 -2.2922 -0.6156 46 1 1.6844 -2.1415 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053877040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:00 Heat of formation + Delta-G solvation = 18.891967 kcal Electronic energy + Delta-G solvation = -28044.815634 eV Core-core repulsion = 24129.637169 eV Total energy + Delta-G solvation = -3915.178465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.11448 -40.04386 -38.84255 -36.16582 -34.64268 -33.98800 -33.56373 -32.04634 -30.54465 -28.43475 -27.80561 -27.49683 -25.83873 -24.86138 -24.13660 -22.62356 -21.81662 -21.03050 -20.60135 -18.94139 -18.31347 -17.25427 -16.68583 -16.21041 -15.62305 -15.46851 -15.23170 -15.05984 -14.89359 -14.46835 -14.25399 -14.07660 -13.64317 -13.51248 -13.38678 -13.32789 -12.96042 -12.93144 -12.78199 -12.65779 -12.52992 -12.12776 -11.83561 -11.50887 -11.39797 -11.18287 -11.06390 -10.81018 -10.50245 -10.33533 -10.18038 -9.96176 -9.74438 -9.60752 -9.48261 -9.31453 -9.09408 -8.78061 -8.64973 -6.83329 -5.70593 -3.02284 0.33615 0.85888 2.54374 2.99344 3.43618 3.48083 3.50586 3.54261 3.89309 4.28281 4.30335 4.34902 4.50542 4.50793 4.56613 4.73189 4.79123 5.04308 5.07111 5.08801 5.22173 5.24641 5.29812 5.35935 5.40375 5.47816 5.52773 5.54852 5.67624 5.74973 5.81325 5.85506 5.99881 6.03273 6.07925 6.12196 6.31964 6.38995 6.52288 6.54055 6.64098 6.99921 7.24491 7.29653 7.53320 7.58558 7.71994 8.03542 8.10414 9.09947 9.76410 10.63464 11.46858 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.002274 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.407680 B =12312.234956 C =12849.667421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.112 4.112 3 C 0.090 3.910 4 N -0.449 5.449 5 C 0.066 3.934 6 C 0.570 3.430 7 O -0.530 6.530 8 N -0.696 5.696 9 C 0.110 3.890 10 H 0.105 0.895 11 C 0.039 3.961 12 O -0.337 6.337 13 C 0.056 3.944 14 C 0.152 3.848 15 N -0.606 5.606 16 C -0.219 4.219 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.130 3.870 25 C -0.145 4.145 26 C -0.067 4.067 27 C -0.118 4.118 28 C -0.091 4.091 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.411 0.589 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.763 -10.982 7.016 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.114 4.114 3 C -0.071 4.071 4 N -0.159 5.159 5 C -0.072 4.072 6 C 0.355 3.645 7 O -0.407 6.407 8 N -0.347 5.347 9 C 0.006 3.994 10 H 0.123 0.877 11 C -0.039 4.039 12 O -0.255 6.255 13 C 0.015 3.985 14 C 0.027 3.973 15 N -0.332 5.332 16 C -0.346 4.346 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.004 3.996 25 C -0.185 4.185 26 C -0.070 4.070 27 C -0.175 4.175 28 C -0.117 4.117 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.179 0.821 33 H 0.248 0.752 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.498 -10.728 6.705 27.571 hybrid contribution -0.047 0.131 -0.293 0.324 sum -24.544 -10.597 6.412 27.493 Atomic orbital electron populations 1.20785 0.89787 1.03534 1.02939 1.21180 0.97870 0.94110 0.98273 1.22679 0.89257 0.97765 0.97395 1.67526 1.08784 1.30116 1.09473 1.20991 0.94220 0.89232 1.02769 1.17873 0.85796 0.83951 0.76887 1.90739 1.66073 1.33647 1.50285 1.45990 1.07234 1.09281 1.72171 1.22524 0.79270 0.99412 0.98241 0.87717 1.23801 1.00417 0.85970 0.93748 1.89017 1.84438 1.19224 1.32793 1.23772 0.96533 0.94663 0.83582 1.22607 0.89038 0.90046 0.95656 1.45846 1.08943 1.20556 1.57826 1.18998 0.91850 1.00400 1.23362 0.90219 1.24773 0.97228 0.97503 1.01059 1.69812 1.18486 1.19526 1.49133 0.86106 0.80923 0.78997 0.79665 1.21689 1.21656 1.20629 1.22504 0.88541 0.90934 0.97630 1.23074 1.01010 0.94413 0.99968 1.20955 0.94287 0.96383 0.95349 1.21076 1.00443 0.91860 1.04090 1.21443 0.92961 0.98575 0.98701 0.90462 0.90741 0.91035 0.82108 0.75188 0.91090 0.89610 0.94673 0.90376 0.93704 0.92974 0.93499 0.90146 0.89161 0.90266 0.92226 0.88059 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 10.03 36.00 0.36 -0.07 16 2 C -0.11 -0.79 5.91 -104.36 -0.62 -1.40 16 3 C 0.09 0.75 10.86 -17.56 -0.19 0.56 16 4 N -0.45 -5.00 9.56 -9.79 -0.09 -5.10 16 5 C 0.07 0.79 6.75 -83.01 -0.56 0.23 16 6 C 0.57 7.76 7.75 -12.18 -0.09 7.67 16 7 O -0.53 -8.08 12.96 5.35 0.07 -8.02 16 8 N -0.70 -9.15 5.07 -52.97 -0.27 -9.42 16 9 C 0.11 1.58 3.49 -66.20 -0.23 1.35 16 10 H 0.10 1.49 7.55 -51.93 -0.39 1.10 16 11 C 0.04 0.65 7.37 37.97 0.28 0.93 16 12 O -0.34 -6.90 11.44 -35.23 -0.40 -7.30 16 13 C 0.06 1.09 1.28 -90.66 -0.12 0.97 16 14 C 0.15 3.65 6.99 -3.40 -0.02 3.63 16 15 N -0.61 -16.13 3.71 -183.64 -0.68 -16.81 16 16 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 17 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -28.06 11.40 55.49 0.63 -27.43 16 20 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.13 2.74 8.47 -3.41 -0.03 2.71 16 25 C -0.15 -2.14 6.24 -25.58 -0.16 -2.30 16 26 C -0.07 -0.68 5.93 -104.09 -0.62 -1.30 16 27 C -0.12 -1.12 8.74 36.00 0.31 -0.81 16 28 C -0.09 -0.70 9.51 -39.31 -0.37 -1.08 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.41 5.09 7.74 -40.82 -0.32 4.77 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 36 H 0.04 0.83 7.96 -51.93 -0.41 0.42 16 37 H 0.08 2.11 7.20 -51.93 -0.37 1.74 16 38 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 42 H 0.09 1.25 7.84 -51.93 -0.41 0.84 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.42 8.05 -51.93 -0.42 0.01 16 45 H 0.10 1.18 5.85 -51.93 -0.30 0.87 16 46 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -34.62 377.62 -9.18 -43.80 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.79 Total: 2.63 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: -2.31 Total: 4.20 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.41 Total: -58.76 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.33 Total: -15.31 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.62 -9.18 -43.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053877040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.690 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds