Wall clock time and date at job start Tue Mar 31 2020 16:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38610 * 120.32370 * 2 1 4 4 N 1.31495 * 120.89969 * 179.76192 * 3 2 1 5 5 C 1.32741 * 121.64317 * 0.53296 * 4 3 2 6 6 C 1.48171 * 119.72152 * 179.74965 * 5 4 3 7 7 O 1.21516 * 119.99763 * 173.94147 * 6 5 4 8 8 N 1.34776 * 119.99717 * 353.93674 * 6 5 4 9 9 C 1.46504 * 119.99437 * 179.97438 * 8 6 5 10 10 H 1.08996 * 110.45885 * 327.60384 * 9 8 6 11 11 C 1.54551 * 110.50552 * 90.34983 * 9 8 6 12 12 O 1.44636 * 105.03350 * 95.01623 * 11 9 8 13 13 C 1.43245 * 105.22497 * 39.02508 * 12 11 9 14 14 C 1.52881 * 115.83871 * 90.92501 * 13 12 11 15 15 N 1.47781 * 85.78086 * 94.51160 * 14 13 12 16 16 C 1.36938 * 134.39838 * 203.86871 * 15 14 13 17 17 H 1.08010 * 119.99646 * 180.02562 * 16 15 14 18 18 C 1.38812 * 120.00371 * 0.02562 * 16 15 14 19 19 N 1.31619 * 119.99873 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00135 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47464 * 89.99206 * 20 18 16 22 22 H 1.48498 * 109.46967 * 209.99759 * 20 18 16 23 23 H 1.48507 * 109.46769 * 329.99415 * 20 18 16 24 24 C 1.47781 * 91.19624 * 23.87595 * 15 14 13 25 25 C 1.53470 * 106.25742 * 321.06521 * 13 12 11 26 26 C 1.39270 * 120.55491 * 359.47295 * 5 4 3 27 27 C 1.50699 * 120.47081 * 180.27829 * 26 5 4 28 28 C 1.38577 * 120.32574 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46973 * 269.97565 * 1 2 3 30 30 H 1.09003 * 109.47168 * 29.97045 * 1 2 3 31 31 H 1.08994 * 109.47460 * 149.97380 * 1 2 3 32 32 H 1.08004 * 119.54318 * 0.02855 * 3 2 1 33 33 H 0.97000 * 120.00333 * 359.72280 * 8 6 5 34 34 H 1.09007 * 110.32833 * 213.90490 * 11 9 8 35 35 H 1.08998 * 110.33177 * 336.12035 * 11 9 8 36 36 H 1.09003 * 113.82290 * 208.72636 * 14 13 12 37 37 H 1.09006 * 113.82431 * 340.29549 * 14 13 12 38 38 H 0.97003 * 119.99735 * 180.02562 * 19 18 16 39 39 H 1.09005 * 113.81898 * 221.90801 * 24 15 14 40 40 H 1.09002 * 113.82675 * 90.34181 * 24 15 14 41 41 H 1.09002 * 110.57719 * 264.15166 * 25 13 12 42 42 H 1.09003 * 110.70328 * 141.33777 * 25 13 12 43 43 H 1.08997 * 109.47258 * 83.27621 * 27 26 5 44 44 H 1.09002 * 109.47559 * 203.28154 * 27 26 5 45 45 H 1.09001 * 109.46899 * 323.27845 * 27 26 5 46 46 H 1.08003 * 120.75720 * 359.95832 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5217 1.2097 0.0047 5 6 4.2294 0.0867 -0.0009 6 6 5.7097 0.1513 -0.0009 7 8 6.3623 -0.8682 0.1051 8 7 6.3323 1.3409 -0.1185 9 6 7.7959 1.4047 -0.1180 10 1 8.2113 0.6195 0.5136 11 6 8.3433 1.2911 -1.5588 12 8 8.5300 2.6565 -1.9980 13 6 9.0351 3.3541 -0.8534 14 6 10.5573 3.3977 -0.7178 15 7 10.4719 4.7034 -1.4047 16 6 11.3423 5.4521 -2.1510 17 1 11.0278 6.4035 -2.5542 18 6 12.6288 4.9885 -2.3892 19 7 13.0123 3.8294 -1.8974 20 14 13.8164 6.0102 -3.4067 21 1 14.5768 6.9208 -2.5136 22 1 14.7607 5.1106 -4.1167 23 1 13.0555 6.8116 -4.3988 24 6 9.0721 4.8784 -0.9643 25 6 8.2776 2.7957 0.3589 26 6 3.5923 -1.1517 -0.0010 27 6 4.3977 -2.4254 -0.0011 28 6 2.2067 -1.1961 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6646 2.1305 0.0005 33 1 5.8113 2.1543 -0.2072 34 1 9.2947 0.7590 -1.5615 35 1 7.6224 0.7826 -2.1988 36 1 10.9058 3.4643 0.3128 37 1 11.0729 2.6297 -1.2945 38 1 13.9114 3.5056 -2.0637 39 1 8.4148 5.2797 -1.7358 40 1 8.9722 5.3920 -0.0081 41 1 7.4275 3.4317 0.6056 42 1 8.9426 2.6973 1.2170 43 1 4.6935 -2.6683 1.0194 44 1 3.7940 -3.2371 -0.4074 45 1 5.2881 -2.2922 -0.6156 46 1 1.6844 -2.1415 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053877040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:59 Heat of formation + Delta-G solvation = -5.409847 kcal Electronic energy + Delta-G solvation = -28045.869440 eV Core-core repulsion = 24129.637169 eV Total energy + Delta-G solvation = -3916.232271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99175 -41.36446 -39.93463 -37.78292 -35.78379 -34.64313 -34.34322 -34.14100 -31.81880 -29.95979 -28.49955 -28.33042 -27.58639 -26.63769 -24.86320 -24.02412 -23.11422 -21.96942 -21.67490 -20.56943 -19.22900 -18.72267 -18.07113 -17.35006 -17.03737 -16.76673 -16.57785 -16.32020 -15.90900 -15.70154 -15.41285 -15.13426 -14.98836 -14.69236 -14.54534 -14.38561 -14.06286 -13.94250 -13.48976 -13.35769 -13.30224 -13.21767 -13.15374 -12.95948 -12.84801 -12.72012 -12.67308 -12.56485 -12.30575 -11.97620 -11.68435 -11.32013 -11.05880 -10.92766 -10.67839 -10.57223 -10.43311 -10.11499 -9.75402 -8.93176 -7.90420 -5.23375 -0.38095 0.22735 1.43377 1.46498 1.54917 1.65365 1.99990 2.46416 2.77887 2.83955 3.13327 3.27340 3.41049 3.51373 3.68315 3.71234 3.76771 3.80517 3.92401 3.97233 4.04701 4.23352 4.29526 4.50039 4.55030 4.63288 4.64733 4.72127 4.76189 4.79895 4.85836 4.87033 4.88712 4.91873 4.93100 5.11116 5.16753 5.19487 5.25385 5.27146 5.34686 5.48455 5.49935 5.69839 5.91856 6.09531 6.37529 6.78720 6.91063 7.10610 7.59894 8.54226 9.26668 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.028582 B = 0.002274 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.407680 B =12312.234956 C =12849.667421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C 0.080 3.920 4 N -0.468 5.468 5 C 0.034 3.966 6 C 0.566 3.434 7 O -0.554 6.554 8 N -0.691 5.691 9 C 0.124 3.876 10 H 0.108 0.892 11 C 0.037 3.963 12 O -0.365 6.365 13 C 0.074 3.926 14 C 0.148 3.852 15 N -0.641 5.641 16 C -0.232 4.232 17 H 0.083 0.917 18 C -0.072 4.072 19 N -0.955 5.955 20 Si 0.981 3.019 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.269 1.269 24 C 0.131 3.869 25 C -0.130 4.130 26 C -0.078 4.078 27 C -0.113 4.113 28 C -0.092 4.092 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.187 0.813 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.248 0.752 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.127 -10.662 7.731 31.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.082 4.082 4 N -0.178 5.178 5 C -0.102 4.102 6 C 0.353 3.647 7 O -0.433 6.433 8 N -0.343 5.343 9 C 0.018 3.982 10 H 0.126 0.874 11 C -0.041 4.041 12 O -0.283 6.283 13 C 0.033 3.967 14 C 0.023 3.977 15 N -0.368 5.368 16 C -0.361 4.361 17 H 0.101 0.899 18 C -0.265 4.265 19 N -0.604 5.604 20 Si 0.809 3.191 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.194 1.194 24 C 0.006 3.994 25 C -0.169 4.169 26 C -0.081 4.081 27 C -0.170 4.170 28 C -0.118 4.118 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.204 0.796 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -27.908 -10.396 7.433 30.694 hybrid contribution 0.831 0.007 -0.533 0.987 sum -27.077 -10.388 6.899 29.810 Atomic orbital electron populations 1.20885 0.87081 1.04817 1.04072 1.21580 0.99675 0.93270 0.95646 1.23239 0.88571 0.99585 0.96758 1.67462 1.10168 1.29967 1.10245 1.20793 0.93199 0.90433 1.05768 1.18245 0.86843 0.83492 0.76084 1.90727 1.66931 1.34324 1.51333 1.45891 1.06477 1.09612 1.72277 1.22274 0.80181 0.99362 0.96352 0.87416 1.23902 1.00322 0.84257 0.95613 1.88983 1.84252 1.20993 1.34106 1.23400 0.93847 0.94060 0.85412 1.22566 0.92258 0.88259 0.94659 1.46265 1.10849 1.21421 1.58238 1.19414 0.92590 1.00673 1.23391 0.89883 1.25669 0.99109 0.98847 1.02835 1.70015 1.18439 1.21190 1.50775 0.85037 0.78457 0.77393 0.78210 1.20953 1.22139 1.19391 1.22738 0.85597 0.92331 0.98729 1.22977 1.01517 0.94498 0.97911 1.21123 0.95596 0.95767 0.95590 1.20988 0.99874 0.92721 1.03420 1.21800 0.91914 1.00273 0.97766 0.89160 0.89524 0.89778 0.79588 0.74597 0.92100 0.89077 0.94474 0.94456 0.94345 0.92787 0.90365 0.87398 0.87693 0.90728 0.89716 0.90645 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.03 71.23 0.71 0.32 16 2 C -0.10 -1.09 5.91 -19.70 -0.12 -1.20 16 3 C 0.08 1.14 10.86 84.83 0.92 2.06 16 4 N -0.47 -9.83 9.56 -184.90 -1.77 -11.59 16 5 C 0.03 0.81 6.75 41.90 0.28 1.09 16 6 C 0.57 15.47 7.75 86.88 0.67 16.15 16 7 O -0.55 -17.30 12.96 -3.77 -0.05 -17.35 16 8 N -0.69 -17.75 5.07 -439.79 -2.23 -19.98 16 9 C 0.12 3.48 3.49 46.11 0.16 3.64 16 10 H 0.11 3.03 7.55 -2.39 -0.02 3.01 16 11 C 0.04 1.25 7.37 72.51 0.53 1.79 16 12 O -0.36 -15.14 11.44 -148.98 -1.70 -16.85 16 13 C 0.07 2.87 1.28 -10.66 -0.01 2.85 16 14 C 0.15 7.31 6.99 86.09 0.60 7.92 16 15 N -0.64 -34.65 3.71 -741.19 -2.75 -37.39 16 16 C -0.23 -13.71 10.70 84.03 0.90 -12.81 16 17 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.95 -60.14 11.40 21.65 0.25 -59.90 16 20 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.13 5.39 8.47 86.09 0.73 6.12 16 25 C -0.13 -3.62 6.24 31.34 0.20 -3.42 16 26 C -0.08 -1.50 5.93 -19.52 -0.12 -1.62 16 27 C -0.11 -2.10 8.74 71.24 0.62 -1.48 16 28 C -0.09 -1.17 9.51 22.45 0.21 -0.96 16 29 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.09 0.15 8.09 -2.39 -0.02 0.13 16 31 H 0.08 0.14 8.09 -2.39 -0.02 0.12 16 32 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.42 9.82 7.74 -92.71 -0.72 9.10 16 34 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.09 2.96 8.06 -2.39 -0.02 2.94 16 36 H 0.04 1.80 7.96 -2.39 -0.02 1.78 16 37 H 0.04 2.12 7.20 -2.38 -0.02 2.11 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 41 H 0.11 2.47 7.69 -2.39 -0.02 2.45 16 42 H 0.10 2.68 7.84 -2.39 -0.02 2.66 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 45 H 0.07 1.81 5.85 -2.39 -0.01 1.80 16 46 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -78.25 377.62 0.83 -77.41 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.28 Total: 19.32 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.77 Total: 16.61 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -6.50 Total: -128.86 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.75 Total: -34.20 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -78.25 0.83 -77.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053877040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.003 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds