Wall clock time and date at job start Tue Mar 31 2020 17:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38603 * 120.32209 * 2 1 4 4 N 1.31495 * 120.89903 * 180.02562 * 3 2 1 5 5 C 1.32746 * 121.64586 * 359.97438 * 4 3 2 6 6 C 1.48163 * 119.72658 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00379 * 174.13585 * 6 5 4 8 8 N 1.34783 * 119.99598 * 354.13021 * 6 5 4 9 9 C 1.46499 * 119.99857 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.73328 * 36.96383 * 9 8 6 11 11 C 1.54466 * 110.82971 * 273.55208 * 9 8 6 12 12 O 1.43524 * 107.57748 * 220.41133 * 11 9 8 13 13 C 1.42545 * 109.63795 * 359.36453 * 12 11 9 14 14 C 1.52950 * 116.15642 * 253.33783 * 13 12 11 15 15 N 1.47778 * 85.80165 * 218.93993 * 14 13 12 16 16 C 1.36938 * 134.40868 * 203.93990 * 15 14 13 17 17 H 1.07997 * 119.99747 * 183.03030 * 16 15 14 18 18 C 1.38816 * 119.99767 * 3.02643 * 16 15 14 19 19 N 1.31611 * 120.00223 * 353.51034 * 18 16 15 20 20 Si 1.86799 * 119.99634 * 173.49912 * 18 16 15 21 21 H 1.48505 * 109.46931 * 94.98071 * 20 18 16 22 22 H 1.48503 * 109.47446 * 214.97764 * 20 18 16 23 23 H 1.48504 * 109.47264 * 334.98088 * 20 18 16 24 24 C 1.47777 * 91.18093 * 23.91835 * 15 14 13 25 25 C 1.54006 * 106.48872 * 23.03573 * 13 12 11 26 26 C 1.39273 * 120.55479 * 359.97438 * 5 4 3 27 27 C 1.50693 * 120.46955 * 180.02562 * 26 5 4 28 28 C 1.38582 * 120.32567 * 180.29557 * 2 1 3 29 29 H 1.09002 * 109.47271 * 90.00520 * 1 2 3 30 30 H 1.09006 * 109.47108 * 210.00078 * 1 2 3 31 31 H 1.08999 * 109.47434 * 330.00277 * 1 2 3 32 32 H 1.08000 * 119.55019 * 0.03938 * 3 2 1 33 33 H 0.96993 * 120.00036 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.83073 * 339.92127 * 11 9 8 35 35 H 1.08994 * 109.83513 * 100.80917 * 11 9 8 36 36 H 1.09001 * 113.82140 * 333.16099 * 14 13 12 37 37 H 1.09004 * 113.82142 * 104.72236 * 14 13 12 38 38 H 0.97002 * 120.00044 * 179.97438 * 19 18 16 39 39 H 1.09000 * 113.81612 * 221.85738 * 24 15 14 40 40 H 1.09000 * 113.92469 * 90.31246 * 24 15 14 41 41 H 1.08994 * 111.15811 * 206.96795 * 25 13 12 42 42 H 1.08999 * 111.15495 * 82.72156 * 25 13 12 43 43 H 1.08997 * 109.47139 * 82.96460 * 27 26 5 44 44 H 1.08994 * 109.47361 * 322.95428 * 27 26 5 45 45 H 1.09003 * 109.47138 * 202.95763 * 27 26 5 46 46 H 1.07997 * 120.75613 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1512 -0.0005 7 8 6.3623 -0.8681 0.1070 8 7 6.3323 1.3406 -0.1199 9 6 7.7959 1.4046 -0.1193 10 1 8.2197 0.5491 -0.6455 11 6 8.3415 1.4871 1.3234 12 8 9.4295 2.4231 1.3224 13 6 9.6272 2.9266 0.0035 14 6 10.8603 2.4084 -0.7382 15 7 10.9965 3.7872 -1.2520 16 6 11.5866 4.3451 -2.3547 17 1 11.5877 5.4175 -2.4821 18 6 12.1835 3.5321 -3.3085 19 7 12.2958 2.2385 -3.0934 20 14 12.8270 4.2741 -4.8974 21 1 14.2756 4.5684 -4.7552 22 1 12.6243 3.3123 -6.0106 23 1 12.0927 5.5314 -5.1896 24 6 10.2409 4.3235 -0.1008 25 6 8.2911 2.7415 -0.7398 26 6 3.5924 -1.1518 0.0005 27 6 4.3978 -2.4254 0.0011 28 6 2.2067 -1.1962 -0.0062 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6647 2.1305 0.0006 33 1 5.8113 2.1543 -0.2054 34 1 7.5568 1.8329 1.9963 35 1 8.6958 0.5067 1.6415 36 1 11.6732 2.1015 -0.0802 37 1 10.6332 1.6718 -1.5090 38 1 12.7125 1.6704 -3.7601 39 1 9.5244 5.1003 -0.3679 40 1 10.8656 4.5945 0.7503 41 1 8.4488 2.6421 -1.8136 42 1 7.6020 3.5566 -0.5191 43 1 4.6987 -2.6646 1.0210 44 1 5.2849 -2.2946 -0.6184 45 1 3.7920 -3.2386 -0.3990 46 1 1.6845 -2.1415 -0.0115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053877041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:03 Heat of formation + Delta-G solvation = 16.062279 kcal Electronic energy + Delta-G solvation = -28091.961179 eV Core-core repulsion = 24176.660009 eV Total energy + Delta-G solvation = -3915.301170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10257 -40.01503 -38.85254 -36.26891 -34.80919 -34.02181 -33.58936 -32.06823 -30.40966 -28.35235 -27.81772 -27.54123 -25.76728 -24.90297 -24.13618 -22.50650 -21.98746 -21.20714 -20.61202 -18.72056 -18.33213 -17.23748 -16.74030 -16.35182 -15.54924 -15.41655 -15.26094 -15.03421 -14.84601 -14.59835 -14.27621 -14.09700 -13.72357 -13.54022 -13.37840 -13.29364 -12.96175 -12.83536 -12.76049 -12.56679 -12.50618 -12.12842 -11.93156 -11.61126 -11.35751 -11.04868 -10.91755 -10.81525 -10.68321 -10.29912 -10.20096 -10.00096 -9.95766 -9.63701 -9.57024 -9.27307 -8.93221 -8.75237 -8.70929 -6.90782 -5.77469 -3.09407 0.34021 0.86308 2.55350 2.96267 3.39531 3.44465 3.46949 3.54506 3.88056 4.24647 4.28908 4.35393 4.49529 4.50959 4.57267 4.70732 4.79518 5.05081 5.07760 5.16976 5.22976 5.26833 5.27287 5.37419 5.40938 5.44582 5.48068 5.55013 5.57438 5.75426 5.82653 5.93855 6.00609 6.06166 6.17783 6.33675 6.35311 6.41087 6.51173 6.61374 6.72818 7.05807 7.23688 7.28694 7.52220 7.57603 7.73147 7.96534 8.11019 9.03676 9.69839 10.58081 11.40004 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.002471 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.003702 B =11327.492536 C =11588.808751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.112 4.112 3 C 0.089 3.911 4 N -0.450 5.450 5 C 0.066 3.934 6 C 0.570 3.430 7 O -0.525 6.525 8 N -0.697 5.697 9 C 0.111 3.889 10 H 0.108 0.892 11 C 0.047 3.953 12 O -0.368 6.368 13 C 0.057 3.943 14 C 0.157 3.843 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.129 3.871 25 C -0.121 4.121 26 C -0.066 4.066 27 C -0.118 4.118 28 C -0.091 4.091 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.411 0.589 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.254 -6.319 7.546 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.114 4.114 3 C -0.071 4.071 4 N -0.160 5.160 5 C -0.072 4.072 6 C 0.356 3.644 7 O -0.401 6.401 8 N -0.349 5.349 9 C 0.006 3.994 10 H 0.126 0.874 11 C -0.032 4.032 12 O -0.286 6.286 13 C 0.016 3.984 14 C 0.031 3.969 15 N -0.333 5.333 16 C -0.349 4.349 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.003 3.997 25 C -0.159 4.159 26 C -0.069 4.069 27 C -0.175 4.175 28 C -0.116 4.116 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.179 0.821 33 H 0.247 0.753 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.974 -6.198 7.498 25.873 hybrid contribution -0.428 -0.050 -0.965 1.057 sum -24.402 -6.248 6.533 26.023 Atomic orbital electron populations 1.20787 0.89783 1.03486 1.02984 1.21179 0.97868 0.94109 0.98268 1.22666 0.89247 0.97757 0.97476 1.67517 1.08794 1.30125 1.09560 1.20974 0.94137 0.89258 1.02810 1.17873 0.85796 0.83892 0.76878 1.90758 1.66030 1.33673 1.49662 1.45803 1.07024 1.09308 1.72723 1.22709 0.79107 1.00683 0.96900 0.87412 1.23441 0.89929 0.93870 0.95931 1.88306 1.51477 1.59418 1.29395 1.24154 0.95352 0.97554 0.81337 1.22565 0.90943 0.89770 0.93611 1.45774 1.63908 1.03248 1.20414 1.18973 1.29822 0.91489 0.94635 0.90071 1.24801 1.01005 0.95669 0.98863 1.69837 1.48561 1.03276 1.34843 0.86109 0.78597 0.77928 0.83162 1.21641 1.21591 1.20534 1.22550 0.93324 0.92857 0.90931 1.22965 0.95838 0.94829 1.02245 1.20963 0.94294 0.96397 0.95211 1.21078 1.00419 0.91828 1.04182 1.21447 0.92946 0.98592 0.98662 0.90421 0.91038 0.90777 0.82121 0.75259 0.91773 0.91043 0.94655 0.90688 0.93562 0.93221 0.93882 0.88214 0.90352 0.90187 0.88056 0.92191 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.03 36.01 0.36 -0.08 16 2 C -0.11 -0.80 5.91 -104.36 -0.62 -1.41 16 3 C 0.09 0.75 10.86 -17.56 -0.19 0.56 16 4 N -0.45 -5.03 9.56 -9.80 -0.09 -5.12 16 5 C 0.07 0.81 6.75 -83.01 -0.56 0.25 16 6 C 0.57 8.07 7.75 -12.18 -0.09 7.98 16 7 O -0.52 -8.45 13.05 5.35 0.07 -8.38 16 8 N -0.70 -9.44 5.13 -52.62 -0.27 -9.71 16 9 C 0.11 1.73 3.29 -65.84 -0.22 1.51 16 10 H 0.11 1.85 7.71 -51.93 -0.40 1.45 16 11 C 0.05 0.75 7.57 37.93 0.29 1.03 16 12 O -0.37 -7.03 11.17 -35.23 -0.39 -7.43 16 13 C 0.06 1.13 1.47 -90.31 -0.13 1.00 16 14 C 0.16 3.83 6.99 -3.37 -0.02 3.81 16 15 N -0.60 -15.71 3.69 -183.20 -0.68 -16.39 16 16 C -0.22 -6.23 10.69 -15.06 -0.16 -6.39 16 17 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -27.36 11.43 55.49 0.63 -26.73 16 20 Si 0.91 22.14 29.56 -169.99 -5.02 17.12 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.13 2.77 8.49 -3.38 -0.03 2.74 16 25 C -0.12 -2.05 6.02 -24.89 -0.15 -2.20 16 26 C -0.07 -0.69 5.93 -104.09 -0.62 -1.31 16 27 C -0.12 -1.18 8.73 36.00 0.31 -0.87 16 28 C -0.09 -0.72 9.51 -39.31 -0.37 -1.09 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 31 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.41 4.97 7.85 -40.82 -0.32 4.65 16 34 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.97 7.18 -51.93 -0.37 1.60 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.88 8.05 -51.93 -0.42 1.46 16 42 H 0.08 1.16 7.98 -51.93 -0.41 0.75 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.24 5.88 -51.93 -0.31 0.94 16 45 H 0.06 0.45 8.05 -51.93 -0.42 0.03 16 46 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -32.94 378.37 -9.18 -42.12 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.83 Total: 3.55 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.30 Total: 5.26 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.41 Total: -57.95 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.32 Total: -15.81 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.94 -9.18 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053877041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.185 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds