Wall clock time and date at job start Tue Mar 31 2020 17:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38603 * 120.32209 * 2 1 4 4 N 1.31495 * 120.89903 * 180.02562 * 3 2 1 5 5 C 1.32746 * 121.64586 * 359.97438 * 4 3 2 6 6 C 1.48163 * 119.72658 * 180.02562 * 5 4 3 7 7 O 1.21513 * 120.00379 * 174.13585 * 6 5 4 8 8 N 1.34783 * 119.99598 * 354.13021 * 6 5 4 9 9 C 1.46499 * 119.99857 * 179.97438 * 8 6 5 10 10 H 1.09007 * 110.73328 * 36.96383 * 9 8 6 11 11 C 1.54466 * 110.82971 * 273.55208 * 9 8 6 12 12 O 1.43524 * 107.57748 * 220.41133 * 11 9 8 13 13 C 1.42545 * 109.63795 * 359.36453 * 12 11 9 14 14 C 1.52950 * 116.15642 * 253.33783 * 13 12 11 15 15 N 1.47778 * 85.80165 * 218.93993 * 14 13 12 16 16 C 1.36938 * 134.40868 * 203.93990 * 15 14 13 17 17 H 1.07997 * 119.99747 * 183.03030 * 16 15 14 18 18 C 1.38816 * 119.99767 * 3.02643 * 16 15 14 19 19 N 1.31611 * 120.00223 * 353.51034 * 18 16 15 20 20 Si 1.86799 * 119.99634 * 173.49912 * 18 16 15 21 21 H 1.48505 * 109.46931 * 94.98071 * 20 18 16 22 22 H 1.48503 * 109.47446 * 214.97764 * 20 18 16 23 23 H 1.48504 * 109.47264 * 334.98088 * 20 18 16 24 24 C 1.47777 * 91.18093 * 23.91835 * 15 14 13 25 25 C 1.54006 * 106.48872 * 23.03573 * 13 12 11 26 26 C 1.39273 * 120.55479 * 359.97438 * 5 4 3 27 27 C 1.50693 * 120.46955 * 180.02562 * 26 5 4 28 28 C 1.38582 * 120.32567 * 180.29557 * 2 1 3 29 29 H 1.09002 * 109.47271 * 90.00520 * 1 2 3 30 30 H 1.09006 * 109.47108 * 210.00078 * 1 2 3 31 31 H 1.08999 * 109.47434 * 330.00277 * 1 2 3 32 32 H 1.08000 * 119.55019 * 0.03938 * 3 2 1 33 33 H 0.96993 * 120.00036 * 0.02562 * 8 6 5 34 34 H 1.09000 * 109.83073 * 339.92127 * 11 9 8 35 35 H 1.08994 * 109.83513 * 100.80917 * 11 9 8 36 36 H 1.09001 * 113.82140 * 333.16099 * 14 13 12 37 37 H 1.09004 * 113.82142 * 104.72236 * 14 13 12 38 38 H 0.97002 * 120.00044 * 179.97438 * 19 18 16 39 39 H 1.09000 * 113.81612 * 221.85738 * 24 15 14 40 40 H 1.09000 * 113.92469 * 90.31246 * 24 15 14 41 41 H 1.08994 * 111.15811 * 206.96795 * 25 13 12 42 42 H 1.08999 * 111.15495 * 82.72156 * 25 13 12 43 43 H 1.08997 * 109.47139 * 82.96460 * 27 26 5 44 44 H 1.08994 * 109.47361 * 322.95428 * 27 26 5 45 45 H 1.09003 * 109.47138 * 202.95763 * 27 26 5 46 46 H 1.07997 * 120.75613 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2097 -0.0005 5 6 4.2295 0.0867 -0.0005 6 6 5.7097 0.1512 -0.0005 7 8 6.3623 -0.8681 0.1070 8 7 6.3323 1.3406 -0.1199 9 6 7.7959 1.4046 -0.1193 10 1 8.2197 0.5491 -0.6455 11 6 8.3415 1.4871 1.3234 12 8 9.4295 2.4231 1.3224 13 6 9.6272 2.9266 0.0035 14 6 10.8603 2.4084 -0.7382 15 7 10.9965 3.7872 -1.2520 16 6 11.5866 4.3451 -2.3547 17 1 11.5877 5.4175 -2.4821 18 6 12.1835 3.5321 -3.3085 19 7 12.2958 2.2385 -3.0934 20 14 12.8270 4.2741 -4.8974 21 1 14.2756 4.5684 -4.7552 22 1 12.6243 3.3123 -6.0106 23 1 12.0927 5.5314 -5.1896 24 6 10.2409 4.3235 -0.1008 25 6 8.2911 2.7415 -0.7398 26 6 3.5924 -1.1518 0.0005 27 6 4.3978 -2.4254 0.0011 28 6 2.2067 -1.1962 -0.0062 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6647 2.1305 0.0006 33 1 5.8113 2.1543 -0.2054 34 1 7.5568 1.8329 1.9963 35 1 8.6958 0.5067 1.6415 36 1 11.6732 2.1015 -0.0802 37 1 10.6332 1.6718 -1.5090 38 1 12.7125 1.6704 -3.7601 39 1 9.5244 5.1003 -0.3679 40 1 10.8656 4.5945 0.7503 41 1 8.4488 2.6421 -1.8136 42 1 7.6020 3.5566 -0.5191 43 1 4.6987 -2.6646 1.0210 44 1 5.2849 -2.2946 -0.6184 45 1 3.7920 -3.2386 -0.3990 46 1 1.6845 -2.1415 -0.0115 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053877041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:02 Heat of formation + Delta-G solvation = -6.489733 kcal Electronic energy + Delta-G solvation = -28092.939108 eV Core-core repulsion = 24176.660009 eV Total energy + Delta-G solvation = -3916.279098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01123 -41.39396 -39.98326 -37.94113 -36.00069 -34.67876 -34.37450 -34.15158 -31.70850 -29.98791 -28.54564 -28.35138 -27.50512 -26.74542 -24.86104 -23.93356 -23.43283 -22.10322 -21.74565 -20.38014 -19.29806 -18.77536 -18.06845 -17.58523 -17.07151 -16.66502 -16.51436 -16.34140 -16.16026 -15.61685 -15.53358 -15.22290 -15.05797 -14.57328 -14.41282 -14.26644 -14.07857 -13.96512 -13.72434 -13.49569 -13.35067 -13.33538 -13.20211 -12.89249 -12.81853 -12.71875 -12.68830 -12.60906 -12.34402 -12.01447 -11.78061 -11.55142 -11.13180 -10.84311 -10.59279 -10.49685 -10.38344 -10.27104 -9.79561 -8.99959 -7.93070 -5.27397 -0.40484 0.21389 1.45861 1.47788 1.57450 1.61926 1.88196 2.42911 2.75696 2.81151 3.08222 3.19159 3.33128 3.50118 3.65229 3.69274 3.73921 3.75196 3.89206 3.96135 4.00034 4.02580 4.22242 4.49067 4.59276 4.62375 4.65341 4.72807 4.75629 4.79175 4.82649 4.86958 4.88521 4.89636 5.00144 5.08833 5.13209 5.18691 5.19873 5.25912 5.29214 5.42869 5.47602 5.68328 5.84892 6.12639 6.31831 6.76172 6.87146 7.06399 7.56834 8.50627 9.24550 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.002471 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.003702 B =11327.492536 C =11588.808751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C 0.081 3.919 4 N -0.467 5.467 5 C 0.035 3.965 6 C 0.566 3.434 7 O -0.554 6.554 8 N -0.689 5.689 9 C 0.124 3.876 10 H 0.085 0.915 11 C 0.047 3.953 12 O -0.377 6.377 13 C 0.078 3.922 14 C 0.151 3.849 15 N -0.629 5.629 16 C -0.233 4.233 17 H 0.091 0.909 18 C -0.067 4.067 19 N -0.954 5.954 20 Si 0.982 3.018 21 H -0.289 1.289 22 H -0.294 1.294 23 H -0.263 1.263 24 C 0.131 3.869 25 C -0.109 4.109 26 C -0.077 4.077 27 C -0.114 4.114 28 C -0.091 4.091 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.190 0.810 33 H 0.420 0.580 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.010 0.990 37 H 0.047 0.953 38 H 0.249 0.751 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.935 -5.181 7.789 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.080 4.080 4 N -0.177 5.177 5 C -0.101 4.101 6 C 0.353 3.647 7 O -0.432 6.432 8 N -0.342 5.342 9 C 0.018 3.982 10 H 0.103 0.897 11 C -0.031 4.031 12 O -0.295 6.295 13 C 0.037 3.963 14 C 0.025 3.975 15 N -0.358 5.358 16 C -0.360 4.360 17 H 0.109 0.891 18 C -0.260 4.260 19 N -0.603 5.603 20 Si 0.810 3.190 21 H -0.216 1.216 22 H -0.221 1.221 23 H -0.187 1.187 24 C 0.006 3.994 25 C -0.147 4.147 26 C -0.080 4.080 27 C -0.170 4.170 28 C -0.117 4.117 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.206 0.794 33 H 0.258 0.742 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.128 0.872 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -27.681 -5.027 7.769 29.187 hybrid contribution 0.596 -0.429 -0.961 1.209 sum -27.085 -5.456 6.808 28.456 Atomic orbital electron populations 1.20891 0.86998 1.04898 1.04066 1.21592 0.99716 0.93235 0.95506 1.23260 0.88489 0.99633 0.96632 1.67453 1.10211 1.29793 1.10283 1.20702 0.92837 0.90540 1.05995 1.18310 0.87006 0.83351 0.76004 1.90746 1.67023 1.34517 1.50905 1.45646 1.05839 1.09837 1.72835 1.22344 0.80537 0.99124 0.96211 0.89710 1.23565 0.89604 0.93361 0.96536 1.88286 1.52764 1.59969 1.28440 1.23687 0.94922 0.95878 0.81826 1.22452 0.92710 0.89148 0.93158 1.46085 1.64159 1.04204 1.21311 1.19417 1.29170 0.92102 0.95349 0.89148 1.25700 1.01932 0.96110 1.02261 1.70043 1.49845 1.04691 1.35694 0.85015 0.77819 0.77521 0.78671 1.21575 1.22078 1.18689 1.22686 0.93252 0.94101 0.89381 1.22842 0.94762 0.96556 1.00550 1.21112 0.95657 0.95684 0.95585 1.20981 0.99812 0.92870 1.03387 1.21801 0.91790 1.00369 0.97723 0.89243 0.89744 0.89356 0.79353 0.74192 0.89485 0.91204 0.97211 0.93450 0.94215 0.90482 0.93580 0.90286 0.87159 0.90756 0.90914 0.89601 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.38 10.03 71.24 0.71 0.33 16 2 C -0.10 -1.07 5.91 -19.69 -0.12 -1.19 16 3 C 0.08 1.14 10.86 84.83 0.92 2.06 16 4 N -0.47 -9.79 9.56 -184.91 -1.77 -11.56 16 5 C 0.04 0.86 6.75 41.89 0.28 1.14 16 6 C 0.57 16.40 7.75 86.88 0.67 17.07 16 7 O -0.55 -18.75 13.05 -3.76 -0.05 -18.80 16 8 N -0.69 -18.61 5.13 -438.69 -2.25 -20.86 16 9 C 0.12 3.91 3.29 46.35 0.15 4.07 16 10 H 0.08 3.10 7.71 -2.38 -0.02 3.08 16 11 C 0.05 1.50 7.57 72.48 0.55 2.05 16 12 O -0.38 -14.28 11.17 -148.98 -1.66 -15.95 16 13 C 0.08 3.13 1.47 -10.44 -0.02 3.11 16 14 C 0.15 7.76 6.99 86.12 0.60 8.37 16 15 N -0.63 -33.26 3.69 -739.66 -2.73 -35.98 16 16 C -0.23 -13.16 10.69 84.03 0.90 -12.27 16 17 H 0.09 4.82 7.84 -2.91 -0.02 4.79 16 18 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 19 N -0.95 -59.05 11.43 21.65 0.25 -58.80 16 20 Si 0.98 46.13 29.56 68.60 2.03 48.15 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 24 C 0.13 5.50 8.49 86.11 0.73 6.23 16 25 C -0.11 -3.67 6.02 31.79 0.19 -3.48 16 26 C -0.08 -1.56 5.93 -19.52 -0.12 -1.67 16 27 C -0.11 -2.27 8.73 71.23 0.62 -1.65 16 28 C -0.09 -1.20 9.51 22.45 0.21 -0.99 16 29 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 0.13 8.10 -2.38 -0.02 0.11 16 31 H 0.09 0.11 8.09 -2.39 -0.02 0.09 16 32 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.42 9.76 7.85 -92.71 -0.73 9.03 16 34 H 0.09 2.41 8.02 -2.39 -0.02 2.39 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 2.66 7.18 -2.38 -0.02 2.65 16 38 H 0.25 14.96 8.31 -92.71 -0.77 14.18 16 39 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 3.04 8.05 -2.39 -0.02 3.02 16 42 H 0.11 3.02 7.98 -2.39 -0.02 3.00 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.89 5.88 -2.39 -0.01 1.88 16 45 H 0.09 1.18 8.05 -2.39 -0.02 1.17 16 46 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -74.47 378.37 0.86 -73.61 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.27 Total: 20.41 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 6.77 Total: 19.78 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -6.50 Total: -127.21 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.71 Total: -34.75 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.47 0.86 -73.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053877041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.120 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds