Wall clock time and date at job start Tue Mar 31 2020 17:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36393 * 120.35180 * 2 1 4 4 C 1.40202 * 119.26694 * 179.97438 * 3 2 1 5 5 C 1.35349 * 119.94500 * 359.75016 * 4 3 2 6 6 N 1.35758 * 120.70158 * 0.50752 * 5 4 3 7 7 C 1.46506 * 119.62426 * 179.76445 * 6 5 4 8 8 C 1.50699 * 109.46928 * 269.72645 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 7 6 11 11 C 1.47383 * 135.85060 * 359.63631 * 10 8 7 12 12 C 1.52078 * 87.41065 * 154.38100 * 11 10 8 13 13 C 1.47389 * 135.85483 * 179.97438 * 10 8 7 14 14 C 1.53509 * 117.21392 * 267.27740 * 12 11 10 15 15 C 1.54634 * 102.70456 * 262.92716 * 14 12 11 16 16 N 1.47143 * 107.37469 * 339.38825 * 15 14 12 17 17 C 1.36942 * 125.57837 * 179.12171 * 16 15 14 18 18 H 1.08004 * 119.99845 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99860 * 359.97192 * 17 16 15 20 20 N 1.31614 * 120.00108 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00120 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47252 * 90.00169 * 21 19 17 23 23 H 1.48496 * 109.47323 * 210.00274 * 21 19 17 24 24 H 1.48500 * 109.47103 * 330.00231 * 21 19 17 25 25 C 1.47748 * 108.84435 * 359.08672 * 16 15 14 26 26 C 1.34662 * 120.75559 * 359.48617 * 6 5 4 27 27 O 1.22055 * 119.99067 * 180.27555 * 26 6 5 28 28 H 1.08991 * 109.47333 * 270.02777 * 1 2 3 29 29 H 1.09000 * 109.46633 * 30.02683 * 1 2 3 30 30 H 1.09002 * 109.47299 * 150.02048 * 1 2 3 31 31 H 1.08004 * 120.36916 * 359.97438 * 3 2 1 32 32 H 1.07993 * 120.02488 * 179.97438 * 4 3 2 33 33 H 1.07997 * 119.64908 * 180.27186 * 5 4 3 34 34 H 1.09004 * 109.47073 * 29.72473 * 7 6 5 35 35 H 1.09000 * 109.47212 * 149.72555 * 7 6 5 36 36 H 1.08997 * 113.54929 * 268.99300 * 11 10 8 37 37 H 1.08999 * 113.54633 * 39.67510 * 11 10 8 38 38 H 1.09001 * 113.54078 * 320.32864 * 13 10 8 39 39 H 1.09001 * 113.54332 * 90.93126 * 13 10 8 40 40 H 1.08996 * 110.76368 * 21.23553 * 14 12 11 41 41 H 1.09003 * 110.75973 * 144.62756 * 14 12 11 42 42 H 1.09002 * 109.86238 * 98.83212 * 15 14 12 43 43 H 1.08997 * 109.86636 * 219.80207 * 15 14 12 44 44 H 0.97007 * 120.00199 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.40762 * 263.50653 * 25 16 15 46 46 H 1.09003 * 110.41318 * 141.08229 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5980 1.1504 0.0005 5 6 4.2513 -0.0349 0.0062 6 7 3.5636 -1.2054 0.0010 7 6 4.2947 -2.4750 0.0021 8 6 4.5460 -2.9111 -1.4184 9 8 4.1526 -2.2289 -2.3408 10 7 5.2078 -4.0593 -1.6638 11 6 5.8262 -5.1187 -0.8469 12 6 5.6024 -6.0590 -2.0210 13 6 5.6333 -4.7986 -2.8657 14 6 4.3005 -6.8724 -2.0307 15 6 4.7444 -8.2317 -1.4421 16 7 6.2033 -8.3272 -1.6084 17 6 6.9849 -9.3747 -1.1996 18 1 8.0514 -9.3508 -1.3685 19 6 6.4065 -10.4672 -0.5682 20 7 5.1068 -10.4965 -0.3628 21 14 7.4728 -11.8958 -0.0099 22 1 7.9375 -11.6533 1.3795 23 1 6.6813 -13.1515 -0.0551 24 1 8.6472 -12.0184 -0.9104 25 6 6.6867 -7.1084 -2.2893 26 6 2.2170 -1.2129 0.0005 27 8 1.6128 -2.2734 0.0009 28 1 -0.3633 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6680 2.1191 -0.0004 32 1 4.1560 2.0750 0.0001 33 1 5.3312 -0.0498 0.0110 34 1 5.2472 -2.3453 0.5162 35 1 3.7047 -3.2337 0.5161 36 1 6.8787 -4.9403 -0.6265 37 1 5.2469 -5.3799 0.0386 38 1 4.8929 -4.7924 -3.6656 39 1 6.6312 -4.5294 -3.2119 40 1 3.5476 -6.4041 -1.3968 41 1 3.9289 -6.9947 -3.0481 42 1 4.4885 -8.2782 -0.3836 43 1 4.2545 -9.0449 -1.9775 44 1 4.7026 -11.2599 0.0788 45 1 6.7872 -7.2857 -3.3602 46 1 7.6386 -6.7883 -1.8654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072732296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:53 Heat of formation + Delta-G solvation = 41.149543 kcal Electronic energy + Delta-G solvation = -28344.975602 eV Core-core repulsion = 24430.762297 eV Total energy + Delta-G solvation = -3914.213304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.71159 -40.62491 -38.38668 -37.02893 -35.75696 -35.26681 -32.30565 -31.48590 -30.10960 -29.03029 -27.99312 -27.37746 -26.07862 -25.63869 -23.83742 -22.90532 -22.65483 -20.34818 -19.68729 -18.40746 -17.71463 -17.55828 -17.31689 -16.72666 -16.46717 -15.79648 -15.68573 -15.24835 -14.77061 -14.61325 -14.30270 -14.13076 -14.00574 -13.80995 -13.25177 -12.96210 -12.92139 -12.52721 -12.44655 -12.39332 -12.19790 -12.07154 -11.98220 -11.86451 -11.74281 -11.05012 -10.96121 -10.72535 -10.58557 -10.38956 -10.18103 -10.12923 -10.07175 -9.89298 -9.71639 -9.59466 -8.67970 -8.63230 -8.03215 -6.87857 -5.74465 -3.08745 0.61115 1.72652 2.19608 2.47948 2.85387 3.37523 3.42766 3.45035 3.48268 4.21268 4.28702 4.34305 4.44304 4.58687 4.60876 4.80606 4.88703 4.90377 5.02968 5.06026 5.17447 5.37957 5.40898 5.46483 5.53996 5.58644 5.59627 5.62304 5.70915 5.77407 5.81699 5.86217 6.00011 6.09856 6.15944 6.20710 6.30666 6.41817 6.50336 6.61637 6.65789 6.86089 7.52418 7.58866 7.67737 7.79774 7.88109 8.01697 8.21306 9.17808 9.77928 10.43261 11.36924 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023865 B = 0.002432 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.971909 B =11512.471919 C =11902.931877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.207 4.207 3 C -0.025 4.025 4 C -0.229 4.229 5 C 0.136 3.864 6 N -0.479 5.479 7 C 0.077 3.923 8 C 0.530 3.470 9 O -0.537 6.537 10 N -0.640 5.640 11 C 0.116 3.884 12 C -0.104 4.104 13 C 0.121 3.879 14 C -0.118 4.118 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.230 4.230 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C 0.522 3.478 27 O -0.542 6.542 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.145 0.855 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.253 0.747 45 H 0.027 0.973 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.810 23.663 2.057 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.211 4.211 3 C -0.046 4.046 4 C -0.252 4.252 5 C 0.009 3.991 6 N -0.190 5.190 7 C -0.049 4.049 8 C 0.318 3.682 9 O -0.414 6.414 10 N -0.375 5.375 11 C -0.006 4.006 12 C -0.106 4.106 13 C -0.001 4.001 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.027 3.973 26 C 0.323 3.677 27 O -0.423 6.423 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.176 0.824 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.564 23.282 1.721 23.397 hybrid contribution 0.753 -0.711 0.306 1.080 sum -0.811 22.570 2.027 22.675 Atomic orbital electron populations 1.20442 0.89090 1.02988 1.02231 1.20787 0.97891 0.91893 1.10535 1.21297 0.93887 0.98009 0.91430 1.20570 0.94646 0.97114 1.12865 1.21877 0.98347 0.84802 0.94067 1.45018 1.08043 1.06437 1.59453 1.21719 0.99456 0.87334 0.96370 1.20094 0.78080 0.79192 0.90874 1.90737 1.51665 1.53089 1.45936 1.49761 1.54470 1.20876 1.12427 1.22993 0.98315 0.82837 0.96452 1.22177 1.00135 0.93202 0.95096 1.22805 1.00008 0.87457 0.89859 1.22483 0.94147 0.97839 1.01158 1.21223 0.83763 0.90447 0.99083 1.44542 1.03302 1.16911 1.68366 1.19032 0.90354 0.94725 1.31684 0.90390 1.24807 0.95998 0.98511 1.01059 1.69960 1.08631 1.30784 1.47413 0.86128 0.79127 0.82011 0.78517 1.21621 1.21699 1.20709 1.21131 0.93751 0.86339 0.96039 1.16947 0.80376 0.91304 0.79036 1.90968 1.66344 1.32737 1.52280 0.91410 0.91565 0.90823 0.84926 0.83759 0.82385 0.86122 0.85141 0.89134 0.89846 0.90393 0.89578 0.91957 0.91770 0.93469 0.93757 0.93692 0.95553 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.81 36.01 0.35 -0.57 16 2 C -0.21 -2.45 5.90 -104.42 -0.62 -3.07 16 3 C -0.02 -0.21 9.75 -39.51 -0.39 -0.60 16 4 C -0.23 -1.72 10.01 -39.87 -0.40 -2.12 16 5 C 0.14 1.16 10.28 -16.84 -0.17 0.99 16 6 N -0.48 -5.78 2.07 -121.06 -0.25 -6.03 16 7 C 0.08 0.87 5.64 -5.19 -0.03 0.84 16 8 C 0.53 7.83 8.14 -10.99 -0.09 7.74 16 9 O -0.54 -9.96 17.20 5.56 0.10 -9.86 16 10 N -0.64 -8.92 3.70 -185.76 -0.69 -9.61 16 11 C 0.12 1.54 7.78 -7.34 -0.06 1.49 16 12 C -0.10 -1.64 1.06 -155.23 -0.16 -1.81 16 13 C 0.12 1.67 8.02 -7.49 -0.06 1.61 16 14 C -0.12 -2.16 6.40 -25.61 -0.16 -2.32 16 15 C 0.18 4.19 5.39 -2.83 -0.02 4.17 16 16 N -0.60 -14.51 3.41 -170.53 -0.58 -15.09 16 17 C -0.23 -6.11 10.28 -15.06 -0.15 -6.27 16 18 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.45 10.30 55.49 0.57 -25.88 16 21 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 2.85 6.70 -3.22 -0.02 2.83 16 26 C 0.52 7.73 7.39 -15.44 -0.11 7.61 16 27 O -0.54 -10.03 15.76 4.87 0.08 -9.96 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.07 0.90 7.62 -51.93 -0.40 0.50 16 31 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.16 0.81 8.03 -52.49 -0.42 0.38 16 34 H 0.12 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.13 1.59 7.39 -51.93 -0.38 1.21 16 36 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.22 7.39 -51.93 -0.38 0.84 16 43 H 0.04 1.17 7.49 -51.93 -0.39 0.78 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 380.61 15.07 5.74 5.74 Total: -1.00 -36.04 380.61 -9.24 -45.28 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.99 Total: -1.34 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -2.19 Total: 10.24 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.95 Total: -56.60 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.17 Total: -19.82 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.04 -9.24 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072732296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.425 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds