Wall clock time and date at job start Tue Mar 31 2020 17:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36393 * 120.35180 * 2 1 4 4 C 1.40202 * 119.26694 * 179.97438 * 3 2 1 5 5 C 1.35349 * 119.94500 * 359.75016 * 4 3 2 6 6 N 1.35758 * 120.70158 * 0.50752 * 5 4 3 7 7 C 1.46506 * 119.62426 * 179.76445 * 6 5 4 8 8 C 1.50699 * 109.46928 * 269.72645 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 179.97438 * 8 7 6 11 11 C 1.47383 * 135.85060 * 359.63631 * 10 8 7 12 12 C 1.52078 * 87.41065 * 154.38100 * 11 10 8 13 13 C 1.47389 * 135.85483 * 179.97438 * 10 8 7 14 14 C 1.53509 * 117.21392 * 267.27740 * 12 11 10 15 15 C 1.54634 * 102.70456 * 262.92716 * 14 12 11 16 16 N 1.47143 * 107.37469 * 339.38825 * 15 14 12 17 17 C 1.36942 * 125.57837 * 179.12171 * 16 15 14 18 18 H 1.08004 * 119.99845 * 179.97438 * 17 16 15 19 19 C 1.38808 * 119.99860 * 359.97192 * 17 16 15 20 20 N 1.31614 * 120.00108 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00120 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47252 * 90.00169 * 21 19 17 23 23 H 1.48496 * 109.47323 * 210.00274 * 21 19 17 24 24 H 1.48500 * 109.47103 * 330.00231 * 21 19 17 25 25 C 1.47748 * 108.84435 * 359.08672 * 16 15 14 26 26 C 1.34662 * 120.75559 * 359.48617 * 6 5 4 27 27 O 1.22055 * 119.99067 * 180.27555 * 26 6 5 28 28 H 1.08991 * 109.47333 * 270.02777 * 1 2 3 29 29 H 1.09000 * 109.46633 * 30.02683 * 1 2 3 30 30 H 1.09002 * 109.47299 * 150.02048 * 1 2 3 31 31 H 1.08004 * 120.36916 * 359.97438 * 3 2 1 32 32 H 1.07993 * 120.02488 * 179.97438 * 4 3 2 33 33 H 1.07997 * 119.64908 * 180.27186 * 5 4 3 34 34 H 1.09004 * 109.47073 * 29.72473 * 7 6 5 35 35 H 1.09000 * 109.47212 * 149.72555 * 7 6 5 36 36 H 1.08997 * 113.54929 * 268.99300 * 11 10 8 37 37 H 1.08999 * 113.54633 * 39.67510 * 11 10 8 38 38 H 1.09001 * 113.54078 * 320.32864 * 13 10 8 39 39 H 1.09001 * 113.54332 * 90.93126 * 13 10 8 40 40 H 1.08996 * 110.76368 * 21.23553 * 14 12 11 41 41 H 1.09003 * 110.75973 * 144.62756 * 14 12 11 42 42 H 1.09002 * 109.86238 * 98.83212 * 15 14 12 43 43 H 1.08997 * 109.86636 * 219.80207 * 15 14 12 44 44 H 0.97007 * 120.00199 * 180.02562 * 20 19 17 45 45 H 1.09007 * 110.40762 * 263.50653 * 25 16 15 46 46 H 1.09003 * 110.41318 * 141.08229 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5980 1.1504 0.0005 5 6 4.2513 -0.0349 0.0062 6 7 3.5636 -1.2054 0.0010 7 6 4.2947 -2.4750 0.0021 8 6 4.5460 -2.9111 -1.4184 9 8 4.1526 -2.2289 -2.3408 10 7 5.2078 -4.0593 -1.6638 11 6 5.8262 -5.1187 -0.8469 12 6 5.6024 -6.0590 -2.0210 13 6 5.6333 -4.7986 -2.8657 14 6 4.3005 -6.8724 -2.0307 15 6 4.7444 -8.2317 -1.4421 16 7 6.2033 -8.3272 -1.6084 17 6 6.9849 -9.3747 -1.1996 18 1 8.0514 -9.3508 -1.3685 19 6 6.4065 -10.4672 -0.5682 20 7 5.1068 -10.4965 -0.3628 21 14 7.4728 -11.8958 -0.0099 22 1 7.9375 -11.6533 1.3795 23 1 6.6813 -13.1515 -0.0551 24 1 8.6472 -12.0184 -0.9104 25 6 6.6867 -7.1084 -2.2893 26 6 2.2170 -1.2129 0.0005 27 8 1.6128 -2.2734 0.0009 28 1 -0.3633 0.0005 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6680 2.1191 -0.0004 32 1 4.1560 2.0750 0.0001 33 1 5.3312 -0.0498 0.0110 34 1 5.2472 -2.3453 0.5162 35 1 3.7047 -3.2337 0.5161 36 1 6.8787 -4.9403 -0.6265 37 1 5.2469 -5.3799 0.0386 38 1 4.8929 -4.7924 -3.6656 39 1 6.6312 -4.5294 -3.2119 40 1 3.5476 -6.4041 -1.3968 41 1 3.9289 -6.9947 -3.0481 42 1 4.4885 -8.2782 -0.3836 43 1 4.2545 -9.0449 -1.9775 44 1 4.7026 -11.2599 0.0788 45 1 6.7872 -7.2857 -3.3602 46 1 7.6386 -6.7883 -1.8654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072732296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:53 Heat of formation + Delta-G solvation = 17.524158 kcal Electronic energy + Delta-G solvation = -28346.000075 eV Core-core repulsion = 24430.762297 eV Total energy + Delta-G solvation = -3915.237778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61415 -41.81954 -39.63556 -37.99264 -37.35509 -36.10884 -34.12533 -32.33612 -31.48646 -30.62641 -29.19341 -28.13415 -27.28169 -27.09638 -25.47326 -23.84878 -23.41009 -22.15847 -20.87202 -19.74703 -18.63228 -18.57084 -18.38070 -18.33392 -17.39708 -16.86591 -16.83569 -16.70287 -16.30538 -15.75692 -15.59859 -15.33931 -15.22923 -14.77013 -14.34225 -14.15803 -13.88267 -13.83289 -13.69598 -13.62806 -13.31274 -13.23898 -13.12109 -12.97719 -12.87167 -12.76224 -12.46685 -12.29524 -12.02909 -11.98169 -11.84810 -11.71884 -11.32179 -11.24501 -11.08106 -10.68510 -10.65935 -9.83063 -8.86313 -8.84603 -7.81012 -5.16303 -0.11873 0.93471 1.31587 1.37279 1.49438 1.50838 1.59361 1.85992 2.52650 2.64165 3.15824 3.31736 3.43593 3.52681 3.61056 3.73751 3.79188 3.94951 4.01041 4.08818 4.18466 4.18837 4.21733 4.34863 4.37815 4.52543 4.55763 4.67835 4.68646 4.76220 4.79059 4.84184 4.88403 4.93328 5.01405 5.15155 5.18105 5.19589 5.26669 5.41751 5.51137 5.64728 5.66929 5.78738 6.04383 6.21786 6.55749 6.86210 6.97535 7.12815 7.81062 8.45503 9.29601 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023865 B = 0.002432 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.971909 B =11512.471919 C =11902.931877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.253 4.253 3 C -0.001 4.001 4 C -0.223 4.223 5 C 0.124 3.876 6 N -0.482 5.482 7 C 0.079 3.921 8 C 0.528 3.472 9 O -0.580 6.580 10 N -0.639 5.639 11 C 0.125 3.875 12 C -0.103 4.103 13 C 0.128 3.872 14 C -0.106 4.106 15 C 0.192 3.808 16 N -0.625 5.625 17 C -0.233 4.233 18 H 0.091 0.909 19 C -0.070 4.070 20 N -0.955 5.955 21 Si 0.976 3.024 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.267 1.267 25 C 0.154 3.846 26 C 0.498 3.502 27 O -0.607 6.607 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.169 0.831 32 H 0.187 0.813 33 H 0.200 0.800 34 H 0.172 0.828 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.012 0.988 43 H 0.001 0.999 44 H 0.244 0.756 45 H 0.033 0.967 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 27.194 2.285 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.257 4.257 3 C -0.022 4.022 4 C -0.245 4.245 5 C -0.001 4.001 6 N -0.191 5.191 7 C -0.046 4.046 8 C 0.317 3.683 9 O -0.460 6.460 10 N -0.373 5.373 11 C 0.004 3.996 12 C -0.104 4.104 13 C 0.005 3.995 14 C -0.144 4.144 15 C 0.067 3.933 16 N -0.351 5.351 17 C -0.362 4.362 18 H 0.108 0.892 19 C -0.263 4.263 20 N -0.605 5.605 21 Si 0.805 3.195 22 H -0.212 1.212 23 H -0.229 1.229 24 H -0.191 1.191 25 C 0.028 3.972 26 C 0.303 3.697 27 O -0.494 6.494 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.186 0.814 32 H 0.204 0.796 33 H 0.216 0.784 34 H 0.190 0.810 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.031 0.969 43 H 0.020 0.980 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.727 26.867 1.939 26.993 hybrid contribution -0.173 -1.711 0.179 1.729 sum 1.554 25.156 2.118 25.293 Atomic orbital electron populations 1.20404 0.88926 1.02528 1.02428 1.20933 0.98506 0.92114 1.14162 1.21783 0.94765 0.98081 0.87603 1.21175 0.94344 0.98406 1.10532 1.22715 1.00320 0.83860 0.93187 1.45093 1.07518 1.07810 1.58684 1.21850 1.01338 0.87143 0.94293 1.20631 0.77072 0.78808 0.91770 1.90712 1.53272 1.54543 1.47517 1.49742 1.54208 1.20698 1.12641 1.23069 1.00132 0.81298 0.95121 1.22012 0.97131 0.93318 0.97984 1.22830 1.01519 0.85806 0.89306 1.22251 0.95736 0.95596 1.00809 1.20866 0.83968 0.91856 0.96658 1.44822 1.03368 1.18302 1.68611 1.19490 0.91195 0.95234 1.30250 0.89169 1.25647 0.97101 1.01345 1.02203 1.70199 1.10373 1.31073 1.48831 0.85101 0.77723 0.78392 0.78255 1.21222 1.22896 1.19128 1.21308 0.95301 0.84740 0.95811 1.17534 0.81461 0.91606 0.79134 1.90912 1.67743 1.34683 1.56063 0.91009 0.88932 0.94214 0.81389 0.79609 0.78362 0.81045 0.86671 0.85680 0.90244 0.91382 0.86300 0.91988 0.91413 0.96928 0.98047 0.94682 0.94931 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.81 71.24 0.70 -1.12 16 2 C -0.25 -5.95 5.90 -19.73 -0.12 -6.06 16 3 C 0.00 -0.01 9.75 22.32 0.22 0.21 16 4 C -0.22 -2.36 10.01 22.08 0.22 -2.14 16 5 C 0.12 1.68 10.28 83.42 0.86 2.53 16 6 N -0.48 -11.03 2.07 -655.05 -1.36 -12.38 16 7 C 0.08 1.67 5.64 85.63 0.48 2.15 16 8 C 0.53 14.88 8.14 87.66 0.71 15.60 16 9 O -0.58 -21.16 17.20 -3.04 -0.05 -21.21 16 10 N -0.64 -16.40 3.70 -860.00 -3.18 -19.58 16 11 C 0.13 2.99 7.78 83.76 0.65 3.64 16 12 C -0.10 -3.07 1.06 -52.63 -0.06 -3.12 16 13 C 0.13 3.20 8.02 83.66 0.67 3.87 16 14 C -0.11 -3.94 6.40 31.32 0.20 -3.74 16 15 C 0.19 9.36 5.39 86.81 0.47 9.83 16 16 N -0.62 -30.04 3.41 -693.45 -2.36 -32.40 16 17 C -0.23 -12.34 10.28 84.03 0.86 -11.48 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 20 N -0.96 -57.31 10.30 21.65 0.22 -57.08 16 21 Si 0.98 44.75 29.55 68.60 2.03 46.78 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 C 0.15 5.36 6.70 86.23 0.58 5.94 16 26 C 0.50 15.22 7.39 84.82 0.63 15.84 16 27 O -0.61 -24.36 15.76 -5.49 -0.09 -24.45 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 30 H 0.04 1.08 7.62 -2.39 -0.02 1.06 16 31 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 32 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 33 H 0.20 0.93 8.03 -2.91 -0.02 0.91 16 34 H 0.17 1.72 8.01 -2.38 -0.02 1.71 16 35 H 0.12 2.86 7.39 -2.39 -0.02 2.84 16 36 H 0.13 2.23 8.06 -2.39 -0.02 2.21 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 39 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.01 0.69 7.39 -2.39 -0.02 0.67 16 43 H 0.00 0.07 7.49 -2.39 -0.02 0.05 16 44 H 0.24 14.39 8.31 -92.70 -0.77 13.62 16 45 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 46 H 0.07 2.03 8.00 -2.39 -0.02 2.02 16 Total: -1.00 -86.25 380.61 3.73 -82.52 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.97 Total: 9.29 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 7.55 Total: 28.51 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -6.68 Total: -121.45 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.14 Total: -45.66 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -86.25 3.73 -82.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072732296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.049 kcal (2) G-P(sol) polarization free energy of solvation -86.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds