Wall clock time and date at job start Tue Mar 31 2020 16:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35651 * 116.99924 * 2 1 4 4 C 1.39344 * 120.54272 * 0.02562 * 3 2 1 5 5 C 1.38295 * 118.43898 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.27742 * 179.97438 * 5 4 3 7 7 C 1.38762 * 119.44792 * 0.24489 * 5 4 3 8 8 N 1.31373 * 121.06453 * 359.47492 * 7 5 4 9 9 C 1.32858 * 121.69719 * 0.54242 * 8 7 5 10 10 C 1.47829 * 119.78392 * 179.70106 * 9 8 7 11 11 O 1.21556 * 120.00258 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00180 * 0.02562 * 10 9 8 13 13 C 1.47389 * 135.85460 * 359.63475 * 12 10 9 14 14 C 1.52071 * 87.41376 * 154.38633 * 13 12 10 15 15 C 1.47398 * 135.85378 * 179.97438 * 12 10 9 16 16 C 1.53514 * 117.20864 * 267.27706 * 14 13 12 17 17 C 1.54629 * 102.70562 * 262.92912 * 16 14 13 18 18 N 1.47151 * 107.37638 * 339.38845 * 17 16 14 19 19 C 1.36934 * 125.58272 * 179.03968 * 18 17 16 20 20 H 1.07998 * 120.00412 * 174.82228 * 19 18 17 21 21 C 1.38813 * 119.99614 * 354.83189 * 19 18 17 22 22 N 1.31613 * 120.00555 * 7.05447 * 21 19 18 23 23 Si 1.86804 * 119.99789 * 187.06355 * 21 19 18 24 24 H 1.48498 * 109.47116 * 94.98314 * 23 21 19 25 25 H 1.48503 * 109.47025 * 214.98430 * 23 21 19 26 26 H 1.48504 * 109.46863 * 334.98478 * 23 21 19 27 27 C 1.47762 * 108.83789 * 359.08717 * 18 17 16 28 28 H 1.09003 * 109.46850 * 300.00247 * 1 2 3 29 29 H 1.09006 * 109.46826 * 60.00019 * 1 2 3 30 30 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.77544 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.46779 * 89.99695 * 6 5 4 33 33 H 1.09003 * 109.47423 * 209.99681 * 6 5 4 34 34 H 1.08999 * 109.46798 * 329.99941 * 6 5 4 35 35 H 1.08009 * 119.46977 * 179.74865 * 7 5 4 36 36 H 1.09007 * 113.54154 * 268.99455 * 13 12 10 37 37 H 1.08997 * 113.54487 * 39.67011 * 13 12 10 38 38 H 1.09001 * 113.54452 * 320.32981 * 15 12 10 39 39 H 1.09000 * 113.54044 * 90.93444 * 15 12 10 40 40 H 1.09001 * 110.76763 * 21.23185 * 16 14 13 41 41 H 1.09000 * 110.76638 * 144.62672 * 16 14 13 42 42 H 1.09005 * 109.86417 * 98.83118 * 17 16 14 43 43 H 1.08991 * 109.86881 * 219.93788 * 17 16 14 44 44 H 0.97003 * 120.00502 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.39969 * 263.50433 * 27 18 17 46 46 H 1.08998 * 110.40280 * 141.08214 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3844 0.0005 5 6 1.9697 3.5928 0.0011 6 6 1.2021 4.8897 0.0011 7 6 3.3573 3.6011 -0.0041 8 7 4.0419 2.4799 0.0008 9 6 3.4410 1.2950 0.0002 10 6 4.2532 0.0598 -0.0009 11 8 3.7075 -1.0264 -0.0019 12 7 5.5987 0.1379 -0.0006 13 6 6.5950 1.2241 -0.0061 14 6 7.5578 0.2511 0.6564 15 6 6.7141 -0.8256 -0.0009 16 6 7.6129 0.2532 2.1905 17 6 8.8311 1.1586 2.4858 18 7 9.6589 1.1920 1.2697 19 6 10.8207 1.9002 1.1159 20 1 11.4019 1.7946 0.2117 21 6 11.2517 2.7536 2.1223 22 7 10.6224 2.7792 3.2779 23 14 12.7249 3.8661 1.8363 24 1 12.2565 5.2027 1.3900 25 1 13.4917 4.0068 3.1002 26 1 13.5975 3.2729 0.7912 27 6 9.0305 0.3372 0.2412 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2175 2.3527 0.0005 32 1 1.0166 5.2021 1.0288 33 1 1.7831 5.6559 -0.5123 34 1 0.2513 4.7491 -0.5132 35 1 3.8829 4.5447 -0.0079 36 1 6.9027 1.5276 -1.0068 37 1 6.3223 2.0683 0.6270 38 1 6.5407 -1.6926 0.6365 39 1 7.0543 -1.0974 -1.0002 40 1 6.7024 0.6818 2.6094 41 1 7.7784 -0.7541 2.5727 42 1 8.4934 2.1654 2.7318 43 1 9.4068 0.7463 3.3144 44 1 10.9233 3.3758 3.9810 45 1 9.4841 -0.6539 0.2419 46 1 9.1217 0.7972 -0.7428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072821305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:07 Heat of formation + Delta-G solvation = 40.943191 kcal Electronic energy + Delta-G solvation = -28637.119127 eV Core-core repulsion = 24722.896874 eV Total energy + Delta-G solvation = -3914.222253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16518 -40.21934 -38.44946 -37.90272 -35.52301 -34.00988 -32.10218 -31.18297 -29.64256 -28.79061 -28.25633 -27.32778 -25.73648 -25.55660 -23.88317 -23.38592 -22.44629 -20.25302 -19.91890 -18.28583 -17.83470 -17.58510 -17.08513 -16.61663 -16.23178 -15.71175 -15.28812 -15.09104 -14.63133 -14.35473 -14.34143 -14.20350 -13.88083 -13.72393 -13.54021 -13.07631 -12.84039 -12.70180 -12.50556 -12.30639 -12.12002 -11.83955 -11.73060 -11.69457 -11.66741 -10.95707 -10.84638 -10.58291 -10.33252 -10.14793 -10.04041 -10.00374 -9.79778 -9.78509 -9.54675 -9.34033 -8.66975 -8.52078 -8.28295 -6.76997 -5.67192 -2.99091 0.49636 1.01833 2.81175 2.87829 3.03780 3.43475 3.48760 3.50676 3.77269 4.05944 4.27540 4.37535 4.52784 4.61418 4.66761 4.75273 4.79494 4.81959 5.07423 5.13482 5.16480 5.19602 5.22051 5.40684 5.51416 5.55835 5.56536 5.71849 5.76772 5.81970 5.88108 5.93863 6.04458 6.12397 6.32229 6.33167 6.38523 6.56685 6.64684 6.78436 6.81075 6.95530 7.61462 7.62465 7.70641 7.88478 7.98812 8.30467 8.40795 9.26708 9.87251 10.54164 11.44778 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.003033 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.332457 B = 9228.598399 C =10438.624080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.273 6.273 3 C 0.138 3.862 4 C -0.181 4.181 5 C -0.076 4.076 6 C -0.114 4.114 7 C 0.059 3.941 8 N -0.405 5.405 9 C 0.046 3.954 10 C 0.596 3.404 11 O -0.529 6.529 12 N -0.626 5.626 13 C 0.136 3.864 14 C -0.110 4.110 15 C 0.121 3.879 16 C -0.116 4.116 17 C 0.180 3.820 18 N -0.604 5.604 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.154 3.846 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.144 0.856 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.165 0.835 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.143 0.620 -7.266 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.088 3.912 4 C -0.207 4.207 5 C -0.078 4.078 6 C -0.172 4.172 7 C -0.102 4.102 8 N -0.115 5.115 9 C -0.093 4.093 10 C 0.385 3.615 11 O -0.405 6.405 12 N -0.359 5.359 13 C 0.014 3.986 14 C -0.112 4.112 15 C -0.002 4.002 16 C -0.154 4.154 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.355 4.355 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.028 3.972 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.182 0.818 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.543 -0.081 -7.129 22.692 hybrid contribution -0.472 0.890 -0.099 1.012 sum -22.015 0.808 -7.228 23.185 Atomic orbital electron populations 1.23203 0.78726 1.04579 1.01108 1.86433 1.20755 1.24575 1.86486 1.20030 0.92197 0.85612 0.93402 1.21570 1.00751 0.91232 1.07175 1.21011 0.95306 0.95727 0.95761 1.20818 0.99783 0.93411 1.03149 1.22709 0.90497 0.96682 1.00361 1.67810 1.39289 0.97244 1.07195 1.20615 0.88227 0.92860 1.07579 1.17062 0.80024 0.87150 0.77307 1.90808 1.70678 1.27866 1.51189 1.49546 1.02757 1.12615 1.71006 1.22807 0.83069 0.92133 1.00593 1.22241 0.95814 0.95564 0.97560 1.22799 0.82488 0.94248 1.00644 1.22437 1.00372 1.00799 0.91794 1.21213 0.87540 0.96576 0.89129 1.44542 1.25066 1.53872 1.09608 1.19047 0.97509 1.16861 1.02038 0.90419 1.24803 0.99430 0.99968 0.96165 1.69981 1.42250 1.40654 1.03808 0.86146 0.81915 0.81091 0.76917 1.21683 1.21892 1.20682 1.21130 0.88240 0.94634 0.93233 0.92552 0.92620 0.87693 0.83800 0.90185 0.90431 0.91145 0.81751 0.90024 0.89093 0.90498 0.89783 0.92179 0.91987 0.93385 0.94122 0.93835 0.95723 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.83 101.05 0.99 1.14 16 2 O -0.27 -3.69 8.56 -40.60 -0.35 -4.04 16 3 C 0.14 1.86 6.71 -38.56 -0.26 1.60 16 4 C -0.18 -1.77 8.80 -39.15 -0.34 -2.11 16 5 C -0.08 -0.69 5.90 -104.40 -0.62 -1.31 16 6 C -0.11 -0.63 10.03 36.01 0.36 -0.27 16 7 C 0.06 0.66 10.85 -17.55 -0.19 0.47 16 8 N -0.40 -5.93 8.02 -9.71 -0.08 -6.01 16 9 C 0.05 0.73 6.76 -82.88 -0.56 0.17 16 10 C 0.60 10.78 8.05 -12.34 -0.10 10.68 16 11 O -0.53 -10.73 15.91 -16.63 -0.26 -10.99 16 12 N -0.63 -10.66 3.70 -186.85 -0.69 -11.35 16 13 C 0.14 2.29 6.82 -7.33 -0.05 2.24 16 14 C -0.11 -1.94 1.06 -155.23 -0.16 -2.10 16 15 C 0.12 1.90 8.02 -7.48 -0.06 1.84 16 16 C -0.12 -2.24 6.40 -25.61 -0.16 -2.40 16 17 C 0.18 4.37 5.40 -2.83 -0.02 4.35 16 18 N -0.60 -15.18 3.41 -170.53 -0.58 -15.76 16 19 C -0.23 -6.22 10.27 -15.06 -0.15 -6.38 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 22 N -0.92 -26.91 10.35 55.49 0.57 -26.33 16 23 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.09 6.70 -3.22 -0.02 3.07 16 28 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 29 H 0.06 0.33 7.70 -51.93 -0.40 -0.07 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.14 0.95 6.46 -52.48 -0.34 0.61 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 34 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.08 1.29 8.06 -51.92 -0.42 0.87 16 37 H 0.09 1.63 7.20 -51.93 -0.37 1.26 16 38 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.29 7.30 -51.93 -0.38 0.91 16 43 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -34.54 375.24 -9.08 -43.62 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.88 Total: -2.41 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -1.44 Total: 10.67 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.78 Total: -59.45 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.61 Total: -15.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.54 -9.08 -43.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072821305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.562 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds