Wall clock time and date at job start Tue Mar 31 2020 16:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35651 * 116.99924 * 2 1 4 4 C 1.39344 * 120.54272 * 0.02562 * 3 2 1 5 5 C 1.38295 * 118.43898 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.27742 * 179.97438 * 5 4 3 7 7 C 1.38762 * 119.44792 * 0.24489 * 5 4 3 8 8 N 1.31373 * 121.06453 * 359.47492 * 7 5 4 9 9 C 1.32858 * 121.69719 * 0.54242 * 8 7 5 10 10 C 1.47829 * 119.78392 * 179.70106 * 9 8 7 11 11 O 1.21556 * 120.00258 * 180.02562 * 10 9 8 12 12 N 1.34775 * 120.00180 * 0.02562 * 10 9 8 13 13 C 1.47389 * 135.85460 * 359.63475 * 12 10 9 14 14 C 1.52071 * 87.41376 * 154.38633 * 13 12 10 15 15 C 1.47398 * 135.85378 * 179.97438 * 12 10 9 16 16 C 1.53514 * 117.20864 * 267.27706 * 14 13 12 17 17 C 1.54629 * 102.70562 * 262.92912 * 16 14 13 18 18 N 1.47151 * 107.37638 * 339.38845 * 17 16 14 19 19 C 1.36934 * 125.58272 * 179.03968 * 18 17 16 20 20 H 1.07998 * 120.00412 * 174.82228 * 19 18 17 21 21 C 1.38813 * 119.99614 * 354.83189 * 19 18 17 22 22 N 1.31613 * 120.00555 * 7.05447 * 21 19 18 23 23 Si 1.86804 * 119.99789 * 187.06355 * 21 19 18 24 24 H 1.48498 * 109.47116 * 94.98314 * 23 21 19 25 25 H 1.48503 * 109.47025 * 214.98430 * 23 21 19 26 26 H 1.48504 * 109.46863 * 334.98478 * 23 21 19 27 27 C 1.47762 * 108.83789 * 359.08717 * 18 17 16 28 28 H 1.09003 * 109.46850 * 300.00247 * 1 2 3 29 29 H 1.09006 * 109.46826 * 60.00019 * 1 2 3 30 30 H 1.08997 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.77544 * 359.97438 * 4 3 2 32 32 H 1.09005 * 109.46779 * 89.99695 * 6 5 4 33 33 H 1.09003 * 109.47423 * 209.99681 * 6 5 4 34 34 H 1.08999 * 109.46798 * 329.99941 * 6 5 4 35 35 H 1.08009 * 119.46977 * 179.74865 * 7 5 4 36 36 H 1.09007 * 113.54154 * 268.99455 * 13 12 10 37 37 H 1.08997 * 113.54487 * 39.67011 * 13 12 10 38 38 H 1.09001 * 113.54452 * 320.32981 * 15 12 10 39 39 H 1.09000 * 113.54044 * 90.93444 * 15 12 10 40 40 H 1.09001 * 110.76763 * 21.23185 * 16 14 13 41 41 H 1.09000 * 110.76638 * 144.62672 * 16 14 13 42 42 H 1.09005 * 109.86417 * 98.83118 * 17 16 14 43 43 H 1.08991 * 109.86881 * 219.93788 * 17 16 14 44 44 H 0.97003 * 120.00502 * 180.02562 * 22 21 19 45 45 H 1.09000 * 110.39969 * 263.50433 * 27 18 17 46 46 H 1.08998 * 110.40280 * 141.08214 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2970 2.3844 0.0005 5 6 1.9697 3.5928 0.0011 6 6 1.2021 4.8897 0.0011 7 6 3.3573 3.6011 -0.0041 8 7 4.0419 2.4799 0.0008 9 6 3.4410 1.2950 0.0002 10 6 4.2532 0.0598 -0.0009 11 8 3.7075 -1.0264 -0.0019 12 7 5.5987 0.1379 -0.0006 13 6 6.5950 1.2241 -0.0061 14 6 7.5578 0.2511 0.6564 15 6 6.7141 -0.8256 -0.0009 16 6 7.6129 0.2532 2.1905 17 6 8.8311 1.1586 2.4858 18 7 9.6589 1.1920 1.2697 19 6 10.8207 1.9002 1.1159 20 1 11.4019 1.7946 0.2117 21 6 11.2517 2.7536 2.1223 22 7 10.6224 2.7792 3.2779 23 14 12.7249 3.8661 1.8363 24 1 12.2565 5.2027 1.3900 25 1 13.4917 4.0068 3.1002 26 1 13.5975 3.2729 0.7912 27 6 9.0305 0.3372 0.2412 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2175 2.3527 0.0005 32 1 1.0166 5.2021 1.0288 33 1 1.7831 5.6559 -0.5123 34 1 0.2513 4.7491 -0.5132 35 1 3.8829 4.5447 -0.0079 36 1 6.9027 1.5276 -1.0068 37 1 6.3223 2.0683 0.6270 38 1 6.5407 -1.6926 0.6365 39 1 7.0543 -1.0974 -1.0002 40 1 6.7024 0.6818 2.6094 41 1 7.7784 -0.7541 2.5727 42 1 8.4934 2.1654 2.7318 43 1 9.4068 0.7463 3.3144 44 1 10.9233 3.3758 3.9810 45 1 9.4841 -0.6539 0.2419 46 1 9.1217 0.7972 -0.7428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072821305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:06 Heat of formation + Delta-G solvation = 19.214350 kcal Electronic energy + Delta-G solvation = -28638.061360 eV Core-core repulsion = 24722.896874 eV Total energy + Delta-G solvation = -3915.164486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.21000 -41.47790 -39.32146 -39.27819 -37.25482 -34.82061 -34.02207 -32.05374 -31.28538 -30.37768 -29.02066 -28.27508 -27.19190 -26.99660 -25.49368 -24.40151 -23.31186 -22.12032 -21.15707 -19.78823 -18.78319 -18.58914 -18.50965 -18.11307 -17.13412 -17.01859 -16.70803 -16.51188 -16.20625 -15.66117 -15.54211 -15.20181 -15.04006 -14.70306 -14.55670 -14.20634 -14.05465 -13.75916 -13.69715 -13.52852 -13.48146 -13.25521 -13.01535 -12.85352 -12.74767 -12.42049 -12.40520 -12.22512 -11.98338 -11.90255 -11.80110 -11.69411 -11.26072 -11.15260 -10.62869 -10.54822 -10.49964 -9.80083 -9.41697 -8.82450 -7.79495 -5.13243 -0.41975 0.18505 1.50494 1.52156 1.60856 1.67580 1.77063 2.15961 2.54690 2.75504 3.04021 3.29166 3.43597 3.51650 3.60060 3.63792 3.85132 3.87716 4.01220 4.08705 4.15423 4.22857 4.23959 4.33307 4.45996 4.56351 4.60915 4.62335 4.71073 4.72202 4.80481 4.83454 4.88007 4.91330 5.00685 5.06604 5.13932 5.16862 5.19959 5.22763 5.45312 5.53175 5.69633 5.80975 6.17568 6.24519 6.65574 6.69191 7.13526 7.15675 7.83175 8.48991 9.31720 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.003033 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.332457 B = 9228.598399 C =10438.624080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.307 6.307 3 C 0.132 3.868 4 C -0.175 4.175 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.046 3.954 8 N -0.431 5.431 9 C -0.001 4.001 10 C 0.590 3.410 11 O -0.563 6.563 12 N -0.629 5.629 13 C 0.146 3.854 14 C -0.103 4.103 15 C 0.127 3.873 16 C -0.101 4.101 17 C 0.193 3.807 18 N -0.624 5.624 19 C -0.236 4.236 20 H 0.087 0.913 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.299 1.299 26 H -0.267 1.267 27 C 0.154 3.846 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.181 0.819 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.185 0.815 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.004 0.996 44 H 0.245 0.755 45 H 0.037 0.963 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.056 1.695 -8.935 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.218 6.218 3 C 0.081 3.919 4 C -0.201 4.201 5 C -0.060 4.060 6 C -0.169 4.169 7 C -0.116 4.116 8 N -0.142 5.142 9 C -0.137 4.137 10 C 0.380 3.620 11 O -0.442 6.442 12 N -0.362 5.362 13 C 0.023 3.977 14 C -0.105 4.105 15 C 0.005 3.995 16 C -0.139 4.139 17 C 0.068 3.932 18 N -0.351 5.351 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.601 5.601 23 Si 0.804 3.196 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.191 1.191 27 C 0.029 3.971 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.198 0.802 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.202 0.798 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.022 0.978 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.461 0.960 -8.835 25.088 hybrid contribution 0.016 0.607 0.412 0.734 sum -23.445 1.568 -8.422 24.961 Atomic orbital electron populations 1.23538 0.76048 1.05962 1.02971 1.86379 1.23685 1.25260 1.86441 1.20187 0.91773 0.86809 0.93129 1.21966 1.02330 0.89968 1.05803 1.21446 0.94662 0.97300 0.92566 1.20946 1.00280 0.91364 1.04354 1.23214 0.91944 0.96395 1.00073 1.67683 1.40558 0.97773 1.08180 1.20363 0.89229 0.92358 1.11771 1.17537 0.80167 0.87828 0.76444 1.90760 1.71222 1.29269 1.52959 1.49571 1.02906 1.12792 1.70955 1.22712 0.82619 0.91500 1.00825 1.22066 0.94870 0.97443 0.96080 1.22837 0.81373 0.93460 1.01804 1.22228 0.97946 1.00206 0.93531 1.20880 0.88690 0.95395 0.88281 1.44822 1.24870 1.54338 1.11060 1.19468 0.98304 1.16640 1.02039 0.89560 1.25639 1.02552 1.01703 0.96083 1.70204 1.43951 1.41379 1.04543 0.85097 0.78797 0.79049 0.76637 1.21458 1.22602 1.19115 1.21285 0.89102 0.94220 0.92531 0.90736 0.90509 0.86783 0.80195 0.88896 0.89248 0.89107 0.79845 0.88706 0.90574 0.90164 0.87222 0.92056 0.90694 0.96928 0.97781 0.94589 0.94518 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.23 16 2 O -0.31 -8.20 8.56 -68.67 -0.59 -8.78 16 3 C 0.13 3.46 6.71 22.93 0.15 3.62 16 4 C -0.17 -2.96 8.80 22.55 0.20 -2.76 16 5 C -0.06 -0.89 5.90 -19.72 -0.12 -1.01 16 6 C -0.11 -0.76 10.03 71.24 0.71 -0.05 16 7 C 0.05 0.98 10.85 84.89 0.92 1.90 16 8 N -0.43 -12.65 8.02 -184.63 -1.48 -14.13 16 9 C 0.00 -0.03 6.76 41.93 0.28 0.26 16 10 C 0.59 21.78 8.05 86.78 0.70 22.48 16 11 O -0.56 -23.42 15.91 17.09 0.27 -23.15 16 12 N -0.63 -21.42 3.70 -863.34 -3.19 -24.62 16 13 C 0.15 4.88 6.82 83.76 0.57 5.45 16 14 C -0.10 -3.57 1.06 -52.63 -0.06 -3.63 16 15 C 0.13 3.85 8.02 83.66 0.67 4.52 16 16 C -0.10 -3.96 6.40 31.32 0.20 -3.76 16 17 C 0.19 9.73 5.40 86.81 0.47 10.20 16 18 N -0.62 -31.76 3.41 -693.44 -2.36 -34.12 16 19 C -0.24 -13.04 10.27 84.03 0.86 -12.18 16 20 H 0.09 4.51 7.84 -2.91 -0.02 4.49 16 21 C -0.07 -3.81 5.48 84.86 0.46 -3.35 16 22 N -0.95 -57.75 10.35 21.65 0.22 -57.52 16 23 Si 0.98 45.69 29.56 68.60 2.03 47.72 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 C 0.15 6.01 6.70 86.22 0.58 6.59 16 28 H 0.07 0.71 7.70 -2.39 -0.02 0.69 16 29 H 0.08 0.68 7.70 -2.38 -0.02 0.67 16 30 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.18 1.60 6.46 -2.91 -0.02 1.58 16 32 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.09 0.46 8.09 -2.39 -0.02 0.44 16 34 H 0.09 0.32 8.09 -2.39 -0.02 0.30 16 35 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.09 2.91 8.06 -2.38 -0.02 2.90 16 37 H 0.08 2.79 7.20 -2.39 -0.02 2.78 16 38 H 0.08 2.40 8.13 -2.39 -0.02 2.38 16 39 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 41 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 42 H 0.01 0.71 7.30 -2.38 -0.02 0.69 16 43 H 0.00 0.23 7.60 -2.39 -0.02 0.21 16 44 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 2.06 8.00 -2.39 -0.02 2.05 16 Total: -1.00 -79.00 375.24 3.61 -75.39 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.98 Total: 9.67 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 7.73 Total: 29.53 kcal Atomic # 7 Polarization: -123.57 SS G_CDS: -6.81 Total: -130.39 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.32 Total: -31.93 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.00 3.61 -75.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072821305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.604 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds