Wall clock time and date at job start Tue Mar 31 2020 16:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35682 * 116.99796 * 2 1 4 4 C 1.38907 * 119.61862 * 180.02562 * 3 2 1 5 5 C 1.39572 * 118.94359 * 180.02562 * 4 3 2 6 6 C 1.48158 * 120.88881 * 180.02562 * 5 4 3 7 7 O 1.21517 * 120.00184 * 187.42926 * 6 5 4 8 8 N 1.34779 * 120.00122 * 7.43422 * 6 5 4 9 9 C 1.47386 * 135.85414 * 176.69101 * 8 6 5 10 10 C 1.51778 * 87.59787 * 205.59231 * 9 8 6 11 11 C 1.47389 * 135.85347 * 356.63930 * 8 6 5 12 12 C 1.53516 * 117.00045 * 92.95968 * 10 9 8 13 13 C 1.54630 * 102.70320 * 164.16179 * 12 10 9 14 14 N 1.47144 * 107.38149 * 339.38872 * 13 12 10 15 15 C 1.36937 * 125.58138 * 179.05866 * 14 13 12 16 16 H 1.07998 * 120.00004 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99870 * 0.03421 * 15 14 13 18 18 N 1.31614 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47242 * 59.99630 * 19 17 15 21 21 H 1.48498 * 109.47530 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47118 * 299.99655 * 19 17 15 23 23 C 1.47753 * 108.83797 * 359.08737 * 14 13 12 24 24 C 1.39968 * 118.21795 * 0.26911 * 5 4 3 25 25 C 1.37976 * 119.13626 * 359.48416 * 24 5 4 26 26 C 1.50693 * 119.51341 * 180.25030 * 25 24 5 27 27 N 1.31917 * 120.97524 * 0.53199 * 25 24 5 28 28 H 1.09002 * 109.47105 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.47264 * 59.99298 * 1 2 3 30 30 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.52357 * 0.02562 * 4 3 2 32 32 H 1.09003 * 113.54786 * 320.29075 * 9 8 6 33 33 H 1.09001 * 113.54254 * 90.89946 * 9 8 6 34 34 H 1.09003 * 113.54641 * 269.03314 * 11 8 6 35 35 H 1.09007 * 113.54348 * 39.64346 * 11 8 6 36 36 H 1.08994 * 110.76918 * 282.46783 * 12 10 9 37 37 H 1.09009 * 110.76018 * 45.86701 * 12 10 9 38 38 H 1.08999 * 109.86409 * 98.84273 * 13 12 10 39 39 H 1.09001 * 109.86913 * 219.93495 * 13 12 10 40 40 H 0.97007 * 119.99898 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.40396 * 263.50350 * 23 14 13 42 42 H 1.08999 * 110.40759 * 141.07898 * 23 14 13 43 43 H 1.08001 * 120.43246 * 179.70376 * 24 5 4 44 44 H 1.08998 * 109.47126 * 270.27518 * 26 25 24 45 45 H 1.09001 * 109.47519 * 30.27695 * 26 25 24 46 46 H 1.09005 * 109.47408 * 150.28195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4326 1.2725 -0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6414 -0.0011 7 8 6.0511 3.7299 0.1355 8 7 6.2921 1.5415 -0.1537 9 6 7.7351 1.2631 -0.2661 10 6 7.3677 0.0023 -1.0269 11 6 6.0479 0.0934 -0.2798 12 6 7.3103 0.1037 -2.5576 13 6 7.3290 -1.3786 -2.9976 14 7 7.8821 -2.1615 -1.8812 15 6 8.0479 -3.5207 -1.8664 16 1 8.4642 -4.0044 -0.9952 17 6 7.6810 -4.2767 -2.9712 18 7 7.1733 -3.6872 -4.0328 19 14 7.9078 -6.1308 -2.9512 20 1 7.1165 -6.7143 -1.8383 21 1 7.4419 -6.7005 -4.2410 22 1 9.3448 -6.4516 -2.7582 23 6 8.2288 -1.2410 -0.7786 24 6 3.2395 3.6635 0.0069 25 6 1.8681 3.5116 0.0020 26 6 0.9859 4.7333 0.0036 27 7 1.3178 2.3127 0.0014 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0230 0.3682 -0.0014 32 1 8.2739 1.9941 -0.8690 33 1 8.2169 1.0686 0.6921 34 1 6.0516 -0.4336 0.6743 35 1 5.1803 -0.1500 -0.8934 36 1 6.3893 0.5904 -2.8784 37 1 8.1825 0.6321 -2.9428 38 1 6.3150 -1.7124 -3.2175 39 1 7.9586 -1.4953 -3.8796 40 1 6.9166 -4.2157 -4.8048 41 1 9.2873 -0.9839 -0.8169 42 1 7.9803 -1.6895 0.1832 43 1 3.6807 4.6493 0.0124 44 1 0.7739 5.0270 1.0316 45 1 1.4943 5.5494 -0.5100 46 1 0.0512 4.5072 -0.5097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072921871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:20 Heat of formation + Delta-G solvation = 45.505869 kcal Electronic energy + Delta-G solvation = -28564.853813 eV Core-core repulsion = 24650.829413 eV Total energy + Delta-G solvation = -3914.024400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26164 -40.45573 -38.64299 -37.81019 -35.75359 -33.50712 -32.18740 -31.95126 -29.64077 -28.79137 -28.56612 -27.00052 -26.10455 -25.97599 -24.21172 -23.06817 -22.84941 -20.34673 -19.73463 -18.62123 -18.17382 -17.23542 -16.80461 -16.46404 -16.28082 -16.08715 -15.65200 -15.39235 -14.82215 -14.50167 -14.38727 -14.32781 -13.88509 -13.78427 -13.55919 -13.00843 -12.72651 -12.63476 -12.55428 -12.38083 -12.26238 -12.01207 -11.87016 -11.81785 -11.22823 -11.02806 -10.94536 -10.68874 -10.56434 -10.33162 -10.16849 -10.10982 -10.04785 -9.92111 -9.66612 -9.57480 -8.70026 -8.62417 -8.61403 -6.87194 -5.73669 -3.07660 0.52914 0.93147 2.65804 2.77426 2.89567 3.39325 3.43881 3.45031 3.60934 3.88770 4.16865 4.44247 4.55430 4.67665 4.82208 4.89319 4.90077 5.08547 5.12589 5.13741 5.17830 5.23548 5.29725 5.44212 5.44263 5.47830 5.57112 5.58825 5.61814 5.69318 5.72185 5.76461 5.78420 5.97538 6.09048 6.14301 6.18901 6.41866 6.46806 6.61028 6.65983 7.02075 7.52370 7.58032 7.59441 7.65199 7.79526 8.02597 8.21962 9.18684 9.78795 10.43934 11.37748 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.003276 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.968662 B = 8545.842880 C =10093.187163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.302 6.302 3 C 0.324 3.676 4 C -0.175 4.175 5 C -0.041 4.041 6 C 0.586 3.414 7 O -0.536 6.536 8 N -0.633 5.633 9 C 0.122 3.878 10 C -0.105 4.105 11 C 0.109 3.891 12 C -0.118 4.118 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.154 3.846 24 C -0.157 4.157 25 C 0.161 3.839 26 C -0.103 4.103 27 N -0.529 5.529 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.253 0.747 41 H 0.028 0.972 42 H 0.043 0.957 43 H 0.149 0.851 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 13.330 8.634 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.209 6.209 3 C 0.145 3.855 4 C -0.196 4.196 5 C -0.052 4.052 6 C 0.376 3.624 7 O -0.414 6.414 8 N -0.367 5.367 9 C 0.000 4.000 10 C -0.107 4.107 11 C -0.013 4.013 12 C -0.156 4.156 13 C 0.055 3.945 14 N -0.331 5.331 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.027 3.973 24 C -0.178 4.178 25 C 0.025 3.975 26 C -0.160 4.160 27 N -0.254 5.254 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.178 0.822 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.166 0.834 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.732 13.554 8.568 19.868 hybrid contribution 0.652 -0.965 -0.033 1.165 sum -11.080 12.589 8.535 18.817 Atomic orbital electron populations 1.22877 0.77063 1.03176 1.02324 1.86304 1.23024 1.23930 1.87598 1.19646 0.89009 0.84667 0.92162 1.21886 0.92723 0.99621 1.05365 1.20066 0.93496 0.93146 0.98462 1.17530 0.85282 0.82833 0.76796 1.90766 1.74067 1.26088 1.50525 1.49662 1.09738 1.06760 1.70525 1.22836 0.81619 0.95491 1.00083 1.22182 0.95823 0.95644 0.97019 1.23158 0.99480 0.78215 1.00446 1.22495 1.00905 1.00820 0.91422 1.21228 0.98983 0.83846 0.90464 1.44524 1.73920 1.02351 1.12281 1.18989 1.36016 0.80562 1.00231 0.90428 1.24792 1.01097 0.98110 0.96298 1.69945 1.47897 1.33808 1.05201 0.86208 0.77782 0.85029 0.76769 1.21154 1.21645 1.21193 1.21132 0.95289 0.88015 0.92827 1.21881 0.93245 0.99643 1.03039 1.20862 0.91567 0.91896 0.93220 1.20743 0.99090 0.92765 1.03390 1.66978 1.41274 0.98481 1.18708 0.92359 0.92246 0.88400 0.82208 0.90092 0.89369 0.88834 0.89193 0.92094 0.91659 0.93459 0.93741 0.93681 0.95429 0.93840 0.83355 0.90060 0.90145 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.30 -3.95 10.47 -18.75 -0.20 -4.14 16 3 C 0.32 4.41 7.49 -17.16 -0.13 4.28 16 4 C -0.18 -2.39 9.21 -38.84 -0.36 -2.75 16 5 C -0.04 -0.58 5.91 -104.68 -0.62 -1.19 16 6 C 0.59 9.14 8.03 -12.19 -0.10 9.04 16 7 O -0.54 -9.65 17.24 5.35 0.09 -9.56 16 8 N -0.63 -9.20 3.70 -186.48 -0.69 -9.89 16 9 C 0.12 1.66 8.03 -7.49 -0.06 1.60 16 10 C -0.10 -1.65 1.06 -155.29 -0.16 -1.81 16 11 C 0.11 1.55 5.87 -7.41 -0.04 1.50 16 12 C -0.12 -2.09 6.40 -25.61 -0.16 -2.25 16 13 C 0.18 4.12 5.39 -2.83 -0.02 4.11 16 14 N -0.60 -14.43 3.41 -170.54 -0.58 -15.01 16 15 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 16 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 17 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 18 N -0.92 -26.29 10.30 55.49 0.57 -25.72 16 19 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 2.85 6.71 -3.22 -0.02 2.83 16 24 C -0.16 -1.93 9.30 -39.03 -0.36 -2.29 16 25 C 0.16 1.81 6.77 -82.65 -0.56 1.25 16 26 C -0.10 -0.76 10.16 36.00 0.37 -0.39 16 27 N -0.53 -6.70 9.09 -9.59 -0.09 -6.79 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.16 2.13 4.00 -52.49 -0.21 1.92 16 32 H 0.08 1.10 8.13 -51.93 -0.42 0.67 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.09 1.32 6.20 -51.92 -0.32 1.00 16 36 H 0.06 1.03 8.07 -51.93 -0.42 0.62 16 37 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 38 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 39 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.04 0.76 8.01 -51.93 -0.42 0.35 16 43 H 0.15 1.66 7.76 -52.49 -0.41 1.25 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -32.14 375.93 -8.41 -40.55 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.73 Total: -0.43 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.43 Total: 8.82 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.79 Total: -57.42 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.10 Total: -13.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.14 -8.41 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072921871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.054 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds