Wall clock time and date at job start Tue Mar 31 2020 16:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35682 * 116.99796 * 2 1 4 4 C 1.38907 * 119.61862 * 180.02562 * 3 2 1 5 5 C 1.39572 * 118.94359 * 180.02562 * 4 3 2 6 6 C 1.48158 * 120.88881 * 180.02562 * 5 4 3 7 7 O 1.21517 * 120.00184 * 187.42926 * 6 5 4 8 8 N 1.34779 * 120.00122 * 7.43422 * 6 5 4 9 9 C 1.47386 * 135.85414 * 176.69101 * 8 6 5 10 10 C 1.51778 * 87.59787 * 205.59231 * 9 8 6 11 11 C 1.47389 * 135.85347 * 356.63930 * 8 6 5 12 12 C 1.53516 * 117.00045 * 92.95968 * 10 9 8 13 13 C 1.54630 * 102.70320 * 164.16179 * 12 10 9 14 14 N 1.47144 * 107.38149 * 339.38872 * 13 12 10 15 15 C 1.36937 * 125.58138 * 179.05866 * 14 13 12 16 16 H 1.07998 * 120.00004 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99870 * 0.03421 * 15 14 13 18 18 N 1.31614 * 120.00195 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99788 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47242 * 59.99630 * 19 17 15 21 21 H 1.48498 * 109.47530 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47118 * 299.99655 * 19 17 15 23 23 C 1.47753 * 108.83797 * 359.08737 * 14 13 12 24 24 C 1.39968 * 118.21795 * 0.26911 * 5 4 3 25 25 C 1.37976 * 119.13626 * 359.48416 * 24 5 4 26 26 C 1.50693 * 119.51341 * 180.25030 * 25 24 5 27 27 N 1.31917 * 120.97524 * 0.53199 * 25 24 5 28 28 H 1.09002 * 109.47105 * 300.00103 * 1 2 3 29 29 H 1.09000 * 109.47264 * 59.99298 * 1 2 3 30 30 H 1.08993 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.52357 * 0.02562 * 4 3 2 32 32 H 1.09003 * 113.54786 * 320.29075 * 9 8 6 33 33 H 1.09001 * 113.54254 * 90.89946 * 9 8 6 34 34 H 1.09003 * 113.54641 * 269.03314 * 11 8 6 35 35 H 1.09007 * 113.54348 * 39.64346 * 11 8 6 36 36 H 1.08994 * 110.76918 * 282.46783 * 12 10 9 37 37 H 1.09009 * 110.76018 * 45.86701 * 12 10 9 38 38 H 1.08999 * 109.86409 * 98.84273 * 13 12 10 39 39 H 1.09001 * 109.86913 * 219.93495 * 13 12 10 40 40 H 0.97007 * 119.99898 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.40396 * 263.50350 * 23 14 13 42 42 H 1.08999 * 110.40759 * 141.07898 * 23 14 13 43 43 H 1.08001 * 120.43246 * 179.70376 * 24 5 4 44 44 H 1.08998 * 109.47126 * 270.27518 * 26 25 24 45 45 H 1.09001 * 109.47519 * 30.27695 * 26 25 24 46 46 H 1.09005 * 109.47408 * 150.28195 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4326 1.2725 -0.0005 5 6 4.0515 2.5235 0.0000 6 6 5.5283 2.6414 -0.0011 7 8 6.0511 3.7299 0.1355 8 7 6.2921 1.5415 -0.1537 9 6 7.7351 1.2631 -0.2661 10 6 7.3677 0.0023 -1.0269 11 6 6.0479 0.0934 -0.2798 12 6 7.3103 0.1037 -2.5576 13 6 7.3290 -1.3786 -2.9976 14 7 7.8821 -2.1615 -1.8812 15 6 8.0479 -3.5207 -1.8664 16 1 8.4642 -4.0044 -0.9952 17 6 7.6810 -4.2767 -2.9712 18 7 7.1733 -3.6872 -4.0328 19 14 7.9078 -6.1308 -2.9512 20 1 7.1165 -6.7143 -1.8383 21 1 7.4419 -6.7005 -4.2410 22 1 9.3448 -6.4516 -2.7582 23 6 8.2288 -1.2410 -0.7786 24 6 3.2395 3.6635 0.0069 25 6 1.8681 3.5116 0.0020 26 6 0.9859 4.7333 0.0036 27 7 1.3178 2.3127 0.0014 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0230 0.3682 -0.0014 32 1 8.2739 1.9941 -0.8690 33 1 8.2169 1.0686 0.6921 34 1 6.0516 -0.4336 0.6743 35 1 5.1803 -0.1500 -0.8934 36 1 6.3893 0.5904 -2.8784 37 1 8.1825 0.6321 -2.9428 38 1 6.3150 -1.7124 -3.2175 39 1 7.9586 -1.4953 -3.8796 40 1 6.9166 -4.2157 -4.8048 41 1 9.2873 -0.9839 -0.8169 42 1 7.9803 -1.6895 0.1832 43 1 3.6807 4.6493 0.0124 44 1 0.7739 5.0270 1.0316 45 1 1.4943 5.5494 -0.5100 46 1 0.0512 4.5072 -0.5097 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072921871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:19 Heat of formation + Delta-G solvation = 23.879720 kcal Electronic energy + Delta-G solvation = -28565.791593 eV Core-core repulsion = 24650.829413 eV Total energy + Delta-G solvation = -3914.962180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36704 -41.55239 -39.81781 -38.84736 -37.36559 -34.56968 -33.94068 -32.85052 -31.26672 -30.31023 -29.35558 -27.95091 -27.58479 -27.05311 -25.83768 -24.27046 -23.78115 -22.13359 -20.85353 -19.94879 -19.18519 -18.69985 -18.21235 -17.53570 -17.27719 -17.10665 -16.89168 -16.66548 -16.45712 -15.99989 -15.58863 -15.29676 -15.23117 -14.89014 -14.57185 -14.17387 -14.13586 -13.76224 -13.69542 -13.42539 -13.37203 -13.26553 -13.07812 -12.86469 -12.72428 -12.68670 -12.23323 -12.06584 -12.06322 -11.98124 -11.83961 -11.71219 -11.33173 -11.24158 -11.05146 -10.69723 -10.64295 -9.86616 -9.56038 -8.83729 -7.79593 -5.14236 -0.49521 -0.01722 1.50019 1.52372 1.54548 1.58460 1.65249 1.98775 2.53744 2.61760 2.98895 3.12231 3.27578 3.43381 3.55571 3.72758 3.77985 3.89907 3.98270 4.02366 4.18578 4.20875 4.35599 4.41390 4.42085 4.48037 4.50122 4.61422 4.62226 4.69145 4.73167 4.78348 4.84189 4.85032 4.91007 4.97065 5.01707 5.06757 5.15879 5.21059 5.34500 5.52126 5.68725 5.81318 6.11342 6.23936 6.46861 6.65654 6.84710 7.15112 7.82968 8.46927 9.30573 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013286 B = 0.003276 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.968662 B = 8545.842880 C =10093.187163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.319 6.319 3 C 0.313 3.687 4 C -0.186 4.186 5 C -0.053 4.053 6 C 0.586 3.414 7 O -0.564 6.564 8 N -0.632 5.632 9 C 0.130 3.870 10 C -0.099 4.099 11 C 0.114 3.886 12 C -0.103 4.103 13 C 0.190 3.810 14 N -0.625 5.625 15 C -0.235 4.235 16 H 0.087 0.913 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.300 1.300 22 H -0.278 1.278 23 C 0.152 3.848 24 C -0.160 4.160 25 C 0.163 3.837 26 C -0.100 4.100 27 N -0.533 5.533 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.119 0.881 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.011 0.989 39 H 0.005 0.995 40 H 0.244 0.756 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.159 0.841 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 14.361 10.471 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.134 3.866 4 C -0.206 4.206 5 C -0.064 4.064 6 C 0.377 3.623 7 O -0.445 6.445 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.101 4.101 11 C -0.008 4.008 12 C -0.142 4.142 13 C 0.065 3.935 14 N -0.351 5.351 15 C -0.364 4.364 16 H 0.105 0.895 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.226 1.226 22 H -0.204 1.204 23 C 0.027 3.973 24 C -0.180 4.180 25 C 0.026 3.974 26 C -0.157 4.157 27 N -0.259 5.259 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.176 0.824 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.177 0.823 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.142 14.583 10.445 21.661 hybrid contribution 0.754 -1.257 -0.584 1.578 sum -11.388 13.326 9.861 20.112 Atomic orbital electron populations 1.23104 0.75379 1.04754 1.02579 1.86278 1.24816 1.23971 1.87560 1.19792 0.89188 0.85178 0.92463 1.21856 0.93003 0.99520 1.06262 1.20051 0.92816 0.93897 0.99607 1.17723 0.85880 0.82484 0.76249 1.90745 1.74682 1.26953 1.52080 1.49636 1.10203 1.06654 1.69996 1.22889 0.81372 0.93888 1.01019 1.21988 0.96669 0.95764 0.95660 1.23197 0.98263 0.78255 1.01087 1.22282 1.01783 0.96914 0.93188 1.20903 0.95890 0.87163 0.89547 1.44804 1.73865 1.02412 1.14053 1.19424 1.34617 0.82185 1.00185 0.89500 1.25597 1.01856 1.02220 0.96332 1.70177 1.49546 1.34815 1.05636 0.85210 0.77890 0.80265 0.76321 1.20199 1.22622 1.20443 1.21307 0.96197 0.88060 0.91713 1.22093 0.93658 0.99621 1.02667 1.21500 0.91838 0.92621 0.91413 1.20878 0.98684 0.91387 1.04765 1.67087 1.41254 0.98732 1.18813 0.91782 0.92241 0.86246 0.82372 0.89596 0.86646 0.86746 0.89980 0.91506 0.90450 0.97098 0.97698 0.94661 0.94363 0.92269 0.82333 0.88397 0.88316 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 113.37 1.18 1.82 16 2 O -0.32 -8.21 10.47 -90.01 -0.94 -9.15 16 3 C 0.31 8.33 7.49 84.80 0.63 8.96 16 4 C -0.19 -4.99 9.21 22.75 0.21 -4.78 16 5 C -0.05 -1.44 5.91 -19.90 -0.12 -1.56 16 6 C 0.59 17.54 8.03 86.88 0.70 18.23 16 7 O -0.56 -19.58 17.24 -3.77 -0.06 -19.65 16 8 N -0.63 -17.20 3.70 -862.18 -3.19 -20.39 16 9 C 0.13 3.18 8.03 83.66 0.67 3.85 16 10 C -0.10 -2.94 1.06 -52.67 -0.06 -2.99 16 11 C 0.11 3.05 5.87 83.71 0.49 3.54 16 12 C -0.10 -3.62 6.40 31.32 0.20 -3.42 16 13 C 0.19 9.03 5.39 86.81 0.47 9.50 16 14 N -0.62 -29.95 3.41 -693.46 -2.36 -32.31 16 15 C -0.24 -12.52 10.28 84.03 0.86 -11.66 16 16 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 17 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 18 N -0.95 -56.46 10.30 21.65 0.22 -56.24 16 19 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.15 5.36 6.71 86.23 0.58 5.94 16 24 C -0.16 -3.69 9.30 22.63 0.21 -3.48 16 25 C 0.16 3.38 6.77 42.48 0.29 3.67 16 26 C -0.10 -1.21 10.16 71.23 0.72 -0.48 16 27 N -0.53 -12.87 9.09 -297.17 -2.70 -15.57 16 28 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 29 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.16 4.17 4.00 -2.91 -0.01 4.16 16 32 H 0.09 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.63 8.07 -2.39 -0.02 2.61 16 35 H 0.08 2.38 6.20 -2.38 -0.01 2.36 16 36 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 37 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.01 0.58 7.38 -2.39 -0.02 0.57 16 39 H 0.00 0.26 7.49 -2.39 -0.02 0.24 16 40 H 0.24 14.26 8.31 -92.70 -0.77 13.49 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 1.92 8.01 -2.39 -0.02 1.90 16 43 H 0.16 3.28 7.76 -2.91 -0.02 3.26 16 44 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.85 8.08 -2.39 -0.02 0.84 16 46 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -71.06 375.93 1.49 -69.57 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.99 Total: 13.04 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 7.51 Total: 23.88 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -8.03 Total: -124.52 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.01 Total: -28.80 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.06 1.49 -69.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072921871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.450 kcal (2) G-P(sol) polarization free energy of solvation -71.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds