Wall clock time and date at job start Tue Mar 31 2020 16:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35425 * 117.00219 * 2 1 4 4 N 1.32231 * 119.80071 * 0.27815 * 3 2 1 5 5 C 1.31885 * 121.80028 * 180.24612 * 4 3 2 6 6 C 1.50700 * 119.40592 * 179.75155 * 5 4 3 7 7 C 1.38360 * 121.18475 * 359.46681 * 5 4 3 8 8 C 1.38331 * 119.45672 * 0.26025 * 7 5 4 9 9 C 1.39990 * 118.35468 * 359.97438 * 8 7 5 10 10 C 1.47522 * 120.60285 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00313 * 172.66713 * 10 9 8 12 12 N 1.34775 * 119.99496 * 352.66636 * 10 9 8 13 13 C 1.47393 * 135.85135 * 182.83267 * 12 10 9 14 14 C 1.52073 * 87.41349 * 154.38733 * 13 12 10 15 15 C 1.47395 * 135.85760 * 3.19942 * 12 10 9 16 16 C 1.53510 * 117.21287 * 267.28475 * 14 13 12 17 17 C 1.54630 * 102.70015 * 262.92805 * 16 14 13 18 18 N 1.47152 * 107.37754 * 339.38313 * 17 16 14 19 19 C 1.36933 * 125.57879 * 179.04367 * 18 17 16 20 20 H 1.08003 * 119.99755 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00254 * 0.02733 * 19 18 17 22 22 N 1.31621 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46781 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46948 * 119.99709 * 23 21 19 26 26 H 1.48498 * 109.47259 * 239.99991 * 23 21 19 27 27 C 1.47751 * 108.83728 * 359.08910 * 18 17 16 28 28 H 1.09000 * 109.47597 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47258 * 300.00236 * 1 2 3 30 30 H 1.09003 * 109.46966 * 59.99438 * 1 2 3 31 31 H 1.08994 * 109.47217 * 269.72200 * 6 5 4 32 32 H 1.09006 * 109.47041 * 149.72369 * 6 5 4 33 33 H 1.08996 * 109.47293 * 29.72567 * 6 5 4 34 34 H 1.07995 * 120.26665 * 180.23410 * 7 5 4 35 35 H 1.08002 * 120.82703 * 179.97438 * 8 7 5 36 36 H 1.08997 * 113.54507 * 268.99884 * 13 12 10 37 37 H 1.09001 * 113.54552 * 39.67733 * 13 12 10 38 38 H 1.09000 * 113.54536 * 320.32991 * 15 12 10 39 39 H 1.09001 * 113.53989 * 90.93022 * 15 12 10 40 40 H 1.08998 * 110.76754 * 21.22391 * 16 14 13 41 41 H 1.08999 * 110.76732 * 144.62489 * 16 14 13 42 42 H 1.08995 * 109.86869 * 98.83575 * 17 16 14 43 43 H 1.09003 * 109.86498 * 219.93333 * 17 16 14 44 44 H 0.96994 * 119.99580 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.40449 * 263.50213 * 27 18 17 46 46 H 1.09001 * 110.40264 * 141.07871 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0056 5 6 1.8772 3.5084 0.0010 6 6 1.0001 4.7338 0.0021 7 6 3.2528 3.6574 0.0011 8 6 4.0588 2.5332 0.0006 9 6 3.4451 1.2750 0.0006 10 6 4.2570 0.0433 -0.0005 11 8 3.7198 -1.0391 0.1339 12 7 5.5943 0.1180 -0.1504 13 6 6.7025 -0.8482 -0.2534 14 6 7.4689 0.2173 -1.0214 15 6 6.5857 1.2015 -0.2763 16 6 7.3541 0.1985 -2.5521 17 6 8.6275 -0.5676 -2.9792 18 7 9.5829 -0.4889 -1.8627 19 6 10.8278 -1.0587 -1.8378 20 1 11.4570 -0.9438 -0.9675 21 6 11.2813 -1.7839 -2.9311 22 7 10.5144 -1.9244 -3.9916 23 14 12.9799 -2.5606 -2.8973 24 1 13.6371 -2.2573 -1.6006 25 1 12.8548 -4.0317 -3.0573 26 1 13.7982 -2.0098 -4.0073 27 6 8.9786 0.3047 -0.7727 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7886 5.0302 -1.0253 32 1 1.5125 5.5469 0.5165 33 1 0.0650 4.5109 0.5158 34 1 3.6935 4.6434 0.0011 35 1 5.1351 2.6238 0.0003 36 1 7.1514 -1.0999 0.7074 37 1 6.4597 -1.7274 -0.8503 38 1 6.2452 2.0338 -0.8921 39 1 7.0009 1.5246 0.6783 40 1 6.4578 -0.3366 -2.8659 41 1 7.3604 1.2123 -2.9526 42 1 8.3819 -1.6096 -3.1837 43 1 9.0574 -0.1053 -3.8678 44 1 10.8312 -2.4314 -4.7553 45 1 9.3133 1.3406 -0.8262 46 1 9.2298 -0.1272 0.1960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073041079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:24 Heat of formation + Delta-G solvation = 47.713689 kcal Electronic energy + Delta-G solvation = -28487.347854 eV Core-core repulsion = 24573.419192 eV Total energy + Delta-G solvation = -3913.928662 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.26485 -40.38085 -38.22959 -37.99728 -35.67448 -33.49535 -32.17238 -32.00740 -29.64874 -28.90461 -28.47999 -27.18035 -26.13188 -25.63218 -23.85565 -23.10467 -22.82085 -20.34928 -19.88143 -18.63755 -18.16500 -17.22529 -17.06818 -16.72540 -16.31495 -15.70048 -15.44484 -14.92319 -14.76321 -14.47549 -14.38382 -14.37849 -13.95756 -13.57244 -13.54497 -13.02055 -12.82154 -12.65629 -12.55061 -12.35995 -12.26602 -11.97233 -11.86672 -11.80759 -11.26796 -11.00618 -10.92939 -10.67040 -10.45372 -10.24463 -10.15331 -10.12771 -10.06284 -9.79662 -9.71063 -9.44227 -8.74362 -8.61017 -8.45588 -6.84963 -5.72084 -3.05925 0.46863 1.00730 2.79670 2.84419 2.94493 3.39826 3.45236 3.47845 3.63527 3.81256 4.33698 4.40230 4.45994 4.60637 4.64841 4.87007 4.92525 5.00485 5.10032 5.13608 5.14548 5.18927 5.28460 5.36195 5.43819 5.47624 5.50364 5.55713 5.62052 5.66844 5.73597 5.82189 5.89940 6.00745 6.11084 6.19471 6.20130 6.45061 6.51273 6.64437 6.67313 7.03969 7.51763 7.55008 7.61188 7.82086 7.85244 8.23959 8.29863 9.20523 9.80689 10.45847 11.39536 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.002561 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.930877 B =10929.368714 C =11490.496801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.271 6.271 3 C 0.376 3.624 4 N -0.547 5.547 5 C 0.188 3.812 6 C -0.108 4.108 7 C -0.221 4.221 8 C -0.018 4.018 9 C -0.206 4.206 10 C 0.590 3.410 11 O -0.522 6.522 12 N -0.641 5.641 13 C 0.130 3.870 14 C -0.104 4.104 15 C 0.101 3.899 16 C -0.118 4.118 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.154 3.846 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 14.178 8.610 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.174 6.174 3 C 0.195 3.805 4 N -0.273 5.273 5 C 0.051 3.949 6 C -0.165 4.165 7 C -0.241 4.241 8 C -0.043 4.043 9 C -0.212 4.212 10 C 0.380 3.620 11 O -0.399 6.399 12 N -0.376 5.376 13 C 0.009 3.991 14 C -0.106 4.106 15 C -0.022 4.022 16 C -0.156 4.156 17 C 0.055 3.945 18 N -0.331 5.331 19 C -0.356 4.356 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.027 3.973 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -19.328 13.042 8.571 24.843 hybrid contribution 1.515 -0.197 -0.066 1.529 sum -17.813 12.846 8.505 23.552 Atomic orbital electron populations 1.22942 0.77630 1.03270 1.02159 1.86549 1.22262 1.22973 1.85651 1.19799 0.88051 0.84924 0.87714 1.67266 1.40254 0.98195 1.21583 1.21179 0.92232 0.91935 0.89556 1.20814 0.99330 0.92773 1.03564 1.21762 0.93789 1.00013 1.08562 1.22309 1.01926 0.90396 0.89713 1.19958 0.91288 0.95025 1.14927 1.17235 0.79783 0.88120 0.76902 1.90825 1.70491 1.29061 1.49529 1.49645 1.03635 1.12040 1.72291 1.22795 0.82265 0.94386 0.99675 1.22206 0.96394 0.95050 0.96927 1.23085 0.86507 0.92406 1.00172 1.22473 1.00686 1.00924 0.91498 1.21224 0.84910 0.97931 0.90469 1.44541 1.15009 1.60394 1.13161 1.19083 0.90090 1.25742 1.00690 0.90330 1.24807 0.98541 1.00692 0.96410 1.69970 1.35847 1.45223 1.05802 0.86052 0.83606 0.78858 0.77276 1.20508 1.21779 1.21805 1.21140 0.87893 0.95316 0.92962 0.88375 0.92333 0.92319 0.89777 0.90085 0.90256 0.83908 0.82439 0.89640 0.90018 0.89997 0.89189 0.91987 0.91843 0.93472 0.93764 0.93786 0.95565 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.27 -4.09 8.60 -39.61 -0.34 -4.43 16 3 C 0.38 5.41 7.50 -16.61 -0.12 5.28 16 4 N -0.55 -6.69 9.11 -9.20 -0.08 -6.77 16 5 C 0.19 1.81 6.78 -82.52 -0.56 1.25 16 6 C -0.11 -0.62 10.16 36.01 0.37 -0.25 16 7 C -0.22 -1.93 9.71 -39.50 -0.38 -2.32 16 8 C -0.02 -0.20 9.29 -38.89 -0.36 -0.56 16 9 C -0.21 -2.93 5.90 -104.69 -0.62 -3.55 16 10 C 0.59 9.97 8.00 -12.48 -0.10 9.87 16 11 O -0.52 -10.71 16.00 -16.35 -0.26 -10.97 16 12 N -0.64 -9.68 3.69 -186.95 -0.69 -10.37 16 13 C 0.13 2.11 7.98 -7.33 -0.06 2.05 16 14 C -0.10 -1.65 1.06 -155.22 -0.16 -1.81 16 15 C 0.10 1.22 5.90 -7.47 -0.04 1.18 16 16 C -0.12 -2.10 6.40 -25.61 -0.16 -2.26 16 17 C 0.18 4.20 5.39 -2.83 -0.02 4.19 16 18 N -0.60 -14.67 3.41 -170.54 -0.58 -15.25 16 19 C -0.23 -6.14 10.28 -15.06 -0.15 -6.29 16 20 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -26.72 10.30 55.49 0.57 -26.14 16 23 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.15 2.85 6.70 -3.22 -0.02 2.83 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.16 1.39 3.97 -52.49 -0.21 1.18 16 36 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.08 0.84 6.19 -51.93 -0.32 0.52 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 43 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -34.44 373.56 -8.97 -43.42 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.74 Total: -2.59 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -1.45 Total: 10.69 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.78 Total: -58.54 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.60 Total: -15.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.44 -8.97 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073041079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.132 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds