Wall clock time and date at job start Tue Mar 31 2020 16:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35425 * 117.00219 * 2 1 4 4 N 1.32231 * 119.80071 * 0.27815 * 3 2 1 5 5 C 1.31885 * 121.80028 * 180.24612 * 4 3 2 6 6 C 1.50700 * 119.40592 * 179.75155 * 5 4 3 7 7 C 1.38360 * 121.18475 * 359.46681 * 5 4 3 8 8 C 1.38331 * 119.45672 * 0.26025 * 7 5 4 9 9 C 1.39990 * 118.35468 * 359.97438 * 8 7 5 10 10 C 1.47522 * 120.60285 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00313 * 172.66713 * 10 9 8 12 12 N 1.34775 * 119.99496 * 352.66636 * 10 9 8 13 13 C 1.47393 * 135.85135 * 182.83267 * 12 10 9 14 14 C 1.52073 * 87.41349 * 154.38733 * 13 12 10 15 15 C 1.47395 * 135.85760 * 3.19942 * 12 10 9 16 16 C 1.53510 * 117.21287 * 267.28475 * 14 13 12 17 17 C 1.54630 * 102.70015 * 262.92805 * 16 14 13 18 18 N 1.47152 * 107.37754 * 339.38313 * 17 16 14 19 19 C 1.36933 * 125.57879 * 179.04367 * 18 17 16 20 20 H 1.08003 * 119.99755 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00254 * 0.02733 * 19 18 17 22 22 N 1.31621 * 119.99972 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00034 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46781 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46948 * 119.99709 * 23 21 19 26 26 H 1.48498 * 109.47259 * 239.99991 * 23 21 19 27 27 C 1.47751 * 108.83728 * 359.08910 * 18 17 16 28 28 H 1.09000 * 109.47597 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47258 * 300.00236 * 1 2 3 30 30 H 1.09003 * 109.46966 * 59.99438 * 1 2 3 31 31 H 1.08994 * 109.47217 * 269.72200 * 6 5 4 32 32 H 1.09006 * 109.47041 * 149.72369 * 6 5 4 33 33 H 1.08996 * 109.47293 * 29.72567 * 6 5 4 34 34 H 1.07995 * 120.26665 * 180.23410 * 7 5 4 35 35 H 1.08002 * 120.82703 * 179.97438 * 8 7 5 36 36 H 1.08997 * 113.54507 * 268.99884 * 13 12 10 37 37 H 1.09001 * 113.54552 * 39.67733 * 13 12 10 38 38 H 1.09000 * 113.54536 * 320.32991 * 15 12 10 39 39 H 1.09001 * 113.53989 * 90.93022 * 15 12 10 40 40 H 1.08998 * 110.76754 * 21.22391 * 16 14 13 41 41 H 1.08999 * 110.76732 * 144.62489 * 16 14 13 42 42 H 1.08995 * 109.86869 * 98.83575 * 17 16 14 43 43 H 1.09003 * 109.86498 * 219.93333 * 17 16 14 44 44 H 0.96994 * 119.99580 * 180.02562 * 22 21 19 45 45 H 1.09001 * 110.40449 * 263.50213 * 27 18 17 46 46 H 1.09001 * 110.40264 * 141.07871 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2066 0.0000 4 7 1.3198 2.3131 0.0056 5 6 1.8772 3.5084 0.0010 6 6 1.0001 4.7338 0.0021 7 6 3.2528 3.6574 0.0011 8 6 4.0588 2.5332 0.0006 9 6 3.4451 1.2750 0.0006 10 6 4.2570 0.0433 -0.0005 11 8 3.7198 -1.0391 0.1339 12 7 5.5943 0.1180 -0.1504 13 6 6.7025 -0.8482 -0.2534 14 6 7.4689 0.2173 -1.0214 15 6 6.5857 1.2015 -0.2763 16 6 7.3541 0.1985 -2.5521 17 6 8.6275 -0.5676 -2.9792 18 7 9.5829 -0.4889 -1.8627 19 6 10.8278 -1.0587 -1.8378 20 1 11.4570 -0.9438 -0.9675 21 6 11.2813 -1.7839 -2.9311 22 7 10.5144 -1.9244 -3.9916 23 14 12.9799 -2.5606 -2.8973 24 1 13.6371 -2.2573 -1.6006 25 1 12.8548 -4.0317 -3.0573 26 1 13.7982 -2.0098 -4.0073 27 6 8.9786 0.3047 -0.7727 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7886 5.0302 -1.0253 32 1 1.5125 5.5469 0.5165 33 1 0.0650 4.5109 0.5158 34 1 3.6935 4.6434 0.0011 35 1 5.1351 2.6238 0.0003 36 1 7.1514 -1.0999 0.7074 37 1 6.4597 -1.7274 -0.8503 38 1 6.2452 2.0338 -0.8921 39 1 7.0009 1.5246 0.6783 40 1 6.4578 -0.3366 -2.8659 41 1 7.3604 1.2123 -2.9526 42 1 8.3819 -1.6096 -3.1837 43 1 9.0574 -0.1053 -3.8678 44 1 10.8312 -2.4314 -4.7553 45 1 9.3133 1.3406 -0.8262 46 1 9.2298 -0.1272 0.1960 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073041079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:23 Heat of formation + Delta-G solvation = 23.925356 kcal Electronic energy + Delta-G solvation = -28488.379393 eV Core-core repulsion = 24573.419192 eV Total energy + Delta-G solvation = -3914.960201 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29791 -41.48395 -39.33543 -39.10726 -37.30720 -34.47718 -33.89988 -32.78230 -31.24819 -30.33141 -29.35649 -28.20435 -27.34065 -27.01182 -25.50249 -23.98536 -23.67065 -22.14178 -21.06191 -19.90463 -19.17782 -18.61696 -18.23683 -18.03697 -17.26759 -16.88616 -16.67386 -16.61691 -16.10328 -15.68485 -15.44308 -15.22046 -15.09859 -14.79684 -14.69970 -14.24868 -13.83153 -13.75072 -13.64732 -13.49333 -13.35239 -13.24967 -13.02268 -12.84877 -12.80421 -12.70308 -12.22602 -12.05154 -11.96999 -11.91366 -11.80960 -11.67951 -11.22223 -11.14439 -10.97106 -10.67802 -10.57091 -9.83024 -9.43787 -8.83863 -7.80856 -5.15324 -0.39276 0.21335 1.48432 1.49204 1.59202 1.68426 1.78471 2.05439 2.52593 2.71581 3.04190 3.25879 3.39889 3.42395 3.62226 3.67842 3.85843 3.87076 4.08465 4.15825 4.20458 4.25569 4.34634 4.35447 4.43220 4.47533 4.61962 4.64971 4.67461 4.73257 4.75619 4.82845 4.86382 4.95259 4.96156 5.01145 5.06147 5.17525 5.18466 5.24918 5.48268 5.51732 5.69218 5.80820 6.18067 6.23530 6.64259 6.74378 7.07991 7.14198 7.82687 8.46455 9.29907 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024493 B = 0.002561 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.930877 B =10929.368714 C =11490.496801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.305 6.305 3 C 0.353 3.647 4 N -0.559 5.559 5 C 0.182 3.818 6 C -0.105 4.105 7 C -0.207 4.207 8 C -0.012 4.012 9 C -0.236 4.236 10 C 0.584 3.416 11 O -0.576 6.576 12 N -0.640 5.640 13 C 0.122 3.878 14 C -0.097 4.097 15 C 0.118 3.882 16 C -0.102 4.102 17 C 0.188 3.812 18 N -0.627 5.627 19 C -0.231 4.231 20 H 0.089 0.911 21 C -0.072 4.072 22 N -0.955 5.955 23 Si 0.975 3.025 24 H -0.261 1.261 25 H -0.299 1.299 26 H -0.295 1.295 27 C 0.152 3.848 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.187 0.813 35 H 0.180 0.820 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.000 1.000 43 H 0.009 0.991 44 H 0.243 0.757 45 H 0.052 0.948 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.147 18.333 10.457 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.211 6.211 3 C 0.173 3.827 4 N -0.285 5.285 5 C 0.045 3.955 6 C -0.162 4.162 7 C -0.227 4.227 8 C -0.037 4.037 9 C -0.242 4.242 10 C 0.376 3.624 11 O -0.457 6.457 12 N -0.374 5.374 13 C 0.000 4.000 14 C -0.099 4.099 15 C -0.003 4.003 16 C -0.140 4.140 17 C 0.063 3.937 18 N -0.353 5.353 19 C -0.360 4.360 20 H 0.107 0.893 21 C -0.265 4.265 22 N -0.605 5.605 23 Si 0.804 3.196 24 H -0.185 1.185 25 H -0.226 1.226 26 H -0.222 1.222 27 C 0.027 3.973 28 H 0.129 0.871 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.204 0.796 35 H 0.197 0.803 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.018 0.982 43 H 0.027 0.973 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.349 17.259 10.460 27.958 hybrid contribution 1.464 -1.405 -0.615 2.120 sum -17.885 15.854 9.845 25.848 Atomic orbital electron populations 1.23101 0.76016 1.04355 1.02621 1.86500 1.24188 1.24345 1.86021 1.20037 0.88504 0.85293 0.88841 1.67343 1.40408 0.98609 1.22119 1.22009 0.93722 0.92073 0.87676 1.20957 0.98876 0.91667 1.04699 1.22242 0.93147 1.01237 1.06038 1.22557 1.03084 0.89316 0.88746 1.19904 0.91087 0.95157 1.18046 1.17749 0.80136 0.88543 0.75949 1.90782 1.71546 1.31205 1.52151 1.49638 1.03361 1.12808 1.71607 1.22834 0.83299 0.93865 1.00013 1.22017 0.95353 0.97008 0.95477 1.23263 0.83799 0.91446 1.01791 1.22262 0.97132 1.01245 0.93353 1.20901 0.87214 0.95778 0.89791 1.44845 1.14604 1.60897 1.15003 1.19524 0.91248 1.24688 1.00535 0.89329 1.25641 1.02139 1.02163 0.96520 1.70207 1.37466 1.46447 1.06348 0.85048 0.79654 0.77166 0.77728 1.18541 1.22645 1.22179 1.21367 0.88920 0.95511 0.91511 0.87079 0.91697 0.91887 0.88504 0.87161 0.90545 0.79578 0.80314 0.88230 0.93333 0.86889 0.85327 0.92526 0.89112 0.98151 0.97313 0.94734 0.93077 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.38 113.37 1.18 1.90 16 2 O -0.31 -9.65 8.60 -66.52 -0.57 -10.23 16 3 C 0.35 10.13 7.50 85.13 0.64 10.76 16 4 N -0.56 -12.87 9.11 -296.05 -2.70 -15.57 16 5 C 0.18 2.87 6.78 42.58 0.29 3.16 16 6 C -0.11 -0.77 10.16 71.24 0.72 -0.04 16 7 C -0.21 -2.60 9.71 22.32 0.22 -2.38 16 8 C -0.01 -0.21 9.29 22.72 0.21 0.00 16 9 C -0.24 -6.45 5.90 -19.91 -0.12 -6.57 16 10 C 0.58 19.79 8.00 86.69 0.69 20.49 16 11 O -0.58 -24.83 16.00 16.71 0.27 -24.56 16 12 N -0.64 -18.40 3.69 -863.63 -3.19 -21.59 16 13 C 0.12 3.91 7.98 83.76 0.67 4.58 16 14 C -0.10 -2.86 1.06 -52.62 -0.06 -2.92 16 15 C 0.12 2.33 5.90 83.67 0.49 2.83 16 16 C -0.10 -3.56 6.40 31.32 0.20 -3.36 16 17 C 0.19 9.16 5.39 86.81 0.47 9.63 16 18 N -0.63 -30.46 3.41 -693.45 -2.36 -32.82 16 19 C -0.23 -12.47 10.28 84.03 0.86 -11.61 16 20 H 0.09 4.50 7.83 -2.91 -0.02 4.47 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 22 N -0.95 -57.96 10.30 21.65 0.22 -57.74 16 23 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 C 0.15 5.25 6.70 86.23 0.58 5.82 16 28 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 30 H 0.06 1.24 8.11 -2.39 -0.02 1.22 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.11 0.20 8.07 -2.38 -0.02 0.18 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.18 2.14 3.97 -2.91 -0.01 2.12 16 36 H 0.10 2.88 8.06 -2.39 -0.02 2.87 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.62 6.19 -2.39 -0.01 1.60 16 39 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 41 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.00 0.01 7.38 -2.39 -0.02 -0.01 16 43 H 0.01 0.47 7.49 -2.39 -0.02 0.46 16 44 H 0.24 14.48 8.31 -92.71 -0.77 13.70 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 1.76 8.00 -2.39 -0.02 1.74 16 Total: -1.00 -82.49 373.56 2.20 -80.29 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 0.99 Total: 5.89 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 7.51 Total: 28.67 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -8.03 Total: -127.72 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.30 Total: -34.78 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -82.49 2.20 -80.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073041079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.212 kcal (2) G-P(sol) polarization free energy of solvation -82.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds