Wall clock time and date at job start Tue Mar 31 2020 17:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37988 * 120.82244 * 2 1 4 4 C 1.39126 * 119.26792 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52687 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.94810 * 0.02562 * 4 3 2 7 7 C 1.31642 * 121.79878 * 359.69797 * 6 4 3 8 8 C 1.50698 * 119.68410 * 180.31158 * 7 6 4 9 9 C 1.39559 * 120.62494 * 0.59135 * 7 6 4 10 10 C 1.47614 * 120.50054 * 179.69861 * 9 7 6 11 11 O 1.21574 * 120.00369 * 269.72402 * 10 9 7 12 12 N 1.34783 * 119.99825 * 89.72186 * 10 9 7 13 13 C 1.47886 * 134.33900 * 180.02562 * 12 10 9 14 14 C 1.52376 * 85.59017 * 156.49434 * 13 12 10 15 15 C 1.47886 * 134.34022 * 359.97257 * 12 10 9 16 16 C 1.53876 * 116.28084 * 264.17806 * 14 13 12 17 17 C 1.54601 * 102.63063 * 264.38118 * 16 14 13 18 18 N 1.47136 * 107.47544 * 339.39360 * 17 16 14 19 19 C 1.36938 * 125.58219 * 178.97076 * 18 17 16 20 20 H 1.08003 * 120.00338 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00180 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00169 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47391 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46843 * 120.00694 * 23 21 19 26 26 H 1.48501 * 109.47147 * 239.99857 * 23 21 19 27 27 C 1.47720 * 108.83064 * 359.00447 * 18 17 16 28 28 H 1.09002 * 109.47291 * 269.97505 * 1 2 3 29 29 H 1.08996 * 109.47041 * 29.98125 * 1 2 3 30 30 H 1.09001 * 109.47283 * 149.98041 * 1 2 3 31 31 H 1.08000 * 120.36609 * 0.04154 * 3 2 1 32 32 H 0.96703 * 114.00193 * 89.99984 * 5 4 3 33 33 H 1.09000 * 109.47621 * 270.27195 * 8 7 6 34 34 H 1.08997 * 109.47738 * 30.27758 * 8 7 6 35 35 H 1.09008 * 109.46650 * 150.27559 * 8 7 6 36 36 H 1.08997 * 113.85873 * 42.32192 * 13 12 10 37 37 H 1.09005 * 113.96416 * 270.66897 * 13 12 10 38 38 H 1.08998 * 113.85229 * 89.34587 * 15 12 10 39 39 H 1.09003 * 113.85792 * 317.67008 * 15 12 10 40 40 H 1.08999 * 110.74128 * 146.13290 * 16 14 13 41 41 H 1.09004 * 110.87990 * 22.69324 * 16 14 13 42 42 H 1.09002 * 109.86948 * 219.87830 * 17 16 14 43 43 H 1.08999 * 109.86727 * 98.90432 * 17 16 14 44 44 H 0.97000 * 119.99735 * 179.97438 * 22 21 19 45 45 H 1.08992 * 110.40138 * 141.24798 * 27 18 17 46 46 H 1.09001 * 110.40009 * 263.54912 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0016 7 6 3.6204 -1.1601 0.0038 8 6 4.4080 -2.4449 0.0095 9 6 2.2256 -1.2044 -0.0016 10 6 1.5171 -2.4994 -0.0023 11 8 1.2250 -3.0321 -1.0554 12 7 1.1941 -3.0915 1.1647 13 6 0.5070 -4.3489 1.5304 14 6 1.2588 -4.2379 2.8511 15 6 1.3866 -2.7425 2.5888 16 6 2.5745 -5.0292 2.9547 17 6 2.1279 -6.3387 3.6445 18 7 0.8515 -6.0672 4.3241 19 6 0.1173 -6.9790 5.0345 20 1 -0.8114 -6.6808 5.4984 21 6 0.5665 -8.2865 5.1585 22 7 1.6985 -8.6498 4.5937 23 14 -0.4348 -9.5301 6.1283 24 1 -1.6569 -8.8751 6.6599 25 1 -0.8231 -10.6543 5.2391 26 1 0.3795 -10.0497 7.2562 27 6 0.4915 -4.6500 4.1138 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6935 2.1313 0.0007 32 1 4.5077 2.6440 0.8835 33 1 4.6019 -2.7568 -1.0168 34 1 5.3547 -2.2886 0.5267 35 1 3.8371 -3.2188 0.5227 36 1 0.8034 -5.2055 0.9249 37 1 -0.5741 -4.2502 1.6290 38 1 0.5750 -2.1501 3.0111 39 1 2.3736 -2.3383 2.8142 40 1 3.2984 -4.4955 3.5705 41 1 2.9838 -5.2337 1.9653 42 1 2.8773 -6.6477 4.3733 43 1 1.9913 -7.1221 2.8990 44 1 2.0125 -9.5635 4.6807 45 1 -0.5823 -4.5503 3.9553 46 1 0.8066 -4.0475 4.9657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073449103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:37 Heat of formation + Delta-G solvation = 25.235004 kcal Electronic energy + Delta-G solvation = -28872.313837 eV Core-core repulsion = 24957.410426 eV Total energy + Delta-G solvation = -3914.903411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27702 -40.31385 -38.45997 -37.28896 -35.65160 -34.59884 -32.40362 -31.96037 -29.62422 -28.79759 -28.36460 -27.86907 -26.28478 -25.73241 -24.01170 -23.24176 -21.61739 -20.37004 -19.88072 -18.69455 -18.43499 -17.51943 -17.34191 -16.76174 -16.32585 -15.88778 -15.32567 -14.91418 -14.58267 -14.41940 -14.18239 -13.79933 -13.74709 -13.68574 -13.51175 -13.09375 -12.95992 -12.56887 -12.50421 -12.43340 -12.28717 -12.12005 -11.98760 -11.90454 -11.84645 -11.13867 -10.96856 -10.78128 -10.54658 -10.31003 -10.12732 -9.98233 -9.93192 -9.84541 -9.72711 -9.53667 -9.08305 -8.64938 -8.63924 -6.88294 -5.75298 -3.09187 0.48467 0.82456 2.47475 2.71490 3.10063 3.35704 3.37473 3.43037 3.45581 4.12645 4.16293 4.28394 4.42630 4.60658 4.70143 4.83054 4.91827 4.98790 5.14791 5.18011 5.21382 5.24074 5.40683 5.43822 5.45208 5.47426 5.55891 5.61492 5.67173 5.76279 5.78036 5.84123 5.86085 5.92696 6.11670 6.14537 6.16189 6.40523 6.44474 6.59160 6.63383 7.10303 7.51609 7.55858 7.56865 7.67283 7.78850 8.05617 8.20791 9.17410 9.77514 10.42370 11.36243 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002731 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.964908 B =10251.381140 C =10518.757153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.010 3.990 3 C -0.197 4.197 4 C 0.329 3.671 5 O -0.481 6.481 6 N -0.506 5.506 7 C 0.196 3.804 8 C -0.113 4.113 9 C -0.181 4.181 10 C 0.591 3.409 11 O -0.534 6.534 12 N -0.632 5.632 13 C 0.132 3.868 14 C -0.104 4.104 15 C 0.115 3.885 16 C -0.120 4.120 17 C 0.179 3.821 18 N -0.604 5.604 19 C -0.229 4.229 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.152 3.848 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.252 0.748 45 H 0.042 0.958 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 20.311 -6.024 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.002 3.998 3 C -0.218 4.218 4 C 0.151 3.849 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.058 3.942 8 C -0.170 4.170 9 C -0.186 4.186 10 C 0.378 3.622 11 O -0.411 6.411 12 N -0.367 5.367 13 C 0.011 3.989 14 C -0.105 4.105 15 C -0.008 4.008 16 C -0.158 4.158 17 C 0.054 3.946 18 N -0.331 5.331 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.025 3.975 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.261 0.739 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.292 19.903 -7.320 21.330 hybrid contribution -1.212 -0.378 0.963 1.594 sum 1.079 19.525 -6.357 20.563 Atomic orbital electron populations 1.20934 0.89338 1.04198 1.03552 1.20185 0.96962 0.90819 0.91796 1.21845 0.93729 0.99252 1.06966 1.19232 0.87022 0.85049 0.93624 1.84727 1.76004 1.34054 1.34081 1.66999 1.41835 0.97807 1.15959 1.21070 0.89161 0.93170 0.90831 1.20893 1.00519 0.91524 1.04113 1.20685 0.94844 0.94260 1.08844 1.17482 0.78639 0.83276 0.82769 1.90827 1.55276 1.64583 1.30403 1.50293 1.57328 1.24104 1.04929 1.23011 0.97162 0.85665 0.93060 1.22506 0.98756 0.93175 0.96100 1.23101 1.01867 0.97458 0.78372 1.22587 0.94090 0.98522 1.00578 1.21214 0.87592 0.90753 0.95039 1.44531 1.22920 1.04398 1.61237 1.19075 1.02380 0.89356 1.24872 0.90365 1.24801 0.97546 0.97298 1.00731 1.69965 1.21213 1.17513 1.48097 0.86059 0.79064 0.81461 0.79237 1.20524 1.21765 1.21779 1.21203 0.96391 0.87685 0.92223 0.89696 0.90209 0.90400 0.83662 0.73914 0.89435 0.89507 0.89959 0.89559 0.89431 0.89479 0.90196 0.91828 0.91938 0.93786 0.93445 0.93767 0.93999 0.95702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.69 36.01 0.35 -0.72 16 2 C 0.01 0.11 5.95 -103.96 -0.62 -0.51 16 3 C -0.20 -1.85 9.72 -39.34 -0.38 -2.23 16 4 C 0.33 3.57 7.74 -16.96 -0.13 3.44 16 5 O -0.48 -4.23 13.55 -18.18 -0.25 -4.47 16 6 N -0.51 -6.48 10.28 -9.20 -0.09 -6.57 16 7 C 0.20 2.51 6.82 -82.18 -0.56 1.95 16 8 C -0.11 -1.31 9.78 36.00 0.35 -0.96 16 9 C -0.18 -2.33 5.38 -104.82 -0.56 -2.90 16 10 C 0.59 8.71 4.55 -12.43 -0.06 8.65 16 11 O -0.53 -9.83 17.83 5.30 0.09 -9.73 16 12 N -0.63 -8.55 3.61 -188.11 -0.68 -9.23 16 13 C 0.13 1.96 8.14 -3.60 -0.03 1.93 16 14 C -0.10 -1.55 0.99 -154.74 -0.15 -1.70 16 15 C 0.11 1.34 7.97 -3.61 -0.03 1.32 16 16 C -0.12 -2.00 6.35 -25.43 -0.16 -2.17 16 17 C 0.18 4.05 5.39 -2.85 -0.02 4.03 16 18 N -0.60 -14.30 3.41 -170.51 -0.58 -14.88 16 19 C -0.23 -6.05 10.28 -15.06 -0.15 -6.21 16 20 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -26.21 10.30 55.49 0.57 -25.64 16 23 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.15 2.73 6.66 -3.17 -0.02 2.71 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.08 0.82 7.18 -51.93 -0.37 0.45 16 31 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.40 1.42 9.06 45.56 0.41 1.83 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.00 7.06 -51.92 -0.37 0.63 16 36 H 0.09 1.42 8.12 -51.93 -0.42 1.00 16 37 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.00 8.07 -51.93 -0.42 0.59 16 42 H 0.04 1.12 7.49 -51.93 -0.39 0.73 16 43 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.04 0.73 8.00 -51.93 -0.42 0.31 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -33.67 380.43 -8.62 -42.29 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.12 Total: -0.33 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -2.27 Total: 6.36 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.78 Total: -56.32 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.15 Total: -14.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.67 -8.62 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073449103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.527 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds