Wall clock time and date at job start Tue Mar 31 2020 17:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37988 * 120.82244 * 2 1 4 4 C 1.39126 * 119.26792 * 180.02562 * 3 2 1 5 5 O 1.35496 * 119.52687 * 180.02562 * 4 3 2 6 6 N 1.32435 * 120.94810 * 0.02562 * 4 3 2 7 7 C 1.31642 * 121.79878 * 359.69797 * 6 4 3 8 8 C 1.50698 * 119.68410 * 180.31158 * 7 6 4 9 9 C 1.39559 * 120.62494 * 0.59135 * 7 6 4 10 10 C 1.47614 * 120.50054 * 179.69861 * 9 7 6 11 11 O 1.21574 * 120.00369 * 269.72402 * 10 9 7 12 12 N 1.34783 * 119.99825 * 89.72186 * 10 9 7 13 13 C 1.47886 * 134.33900 * 180.02562 * 12 10 9 14 14 C 1.52376 * 85.59017 * 156.49434 * 13 12 10 15 15 C 1.47886 * 134.34022 * 359.97257 * 12 10 9 16 16 C 1.53876 * 116.28084 * 264.17806 * 14 13 12 17 17 C 1.54601 * 102.63063 * 264.38118 * 16 14 13 18 18 N 1.47136 * 107.47544 * 339.39360 * 17 16 14 19 19 C 1.36938 * 125.58219 * 178.97076 * 18 17 16 20 20 H 1.08003 * 120.00338 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00180 * 0.02562 * 19 18 17 22 22 N 1.31619 * 120.00169 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47391 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46843 * 120.00694 * 23 21 19 26 26 H 1.48501 * 109.47147 * 239.99857 * 23 21 19 27 27 C 1.47720 * 108.83064 * 359.00447 * 18 17 16 28 28 H 1.09002 * 109.47291 * 269.97505 * 1 2 3 29 29 H 1.08996 * 109.47041 * 29.98125 * 1 2 3 30 30 H 1.09001 * 109.47283 * 149.98041 * 1 2 3 31 31 H 1.08000 * 120.36609 * 0.04154 * 3 2 1 32 32 H 0.96703 * 114.00193 * 89.99984 * 5 4 3 33 33 H 1.09000 * 109.47621 * 270.27195 * 8 7 6 34 34 H 1.08997 * 109.47738 * 30.27758 * 8 7 6 35 35 H 1.09008 * 109.46650 * 150.27559 * 8 7 6 36 36 H 1.08997 * 113.85873 * 42.32192 * 13 12 10 37 37 H 1.09005 * 113.96416 * 270.66897 * 13 12 10 38 38 H 1.08998 * 113.85229 * 89.34587 * 15 12 10 39 39 H 1.09003 * 113.85792 * 317.67008 * 15 12 10 40 40 H 1.08999 * 110.74128 * 146.13290 * 16 14 13 41 41 H 1.09004 * 110.87990 * 22.69324 * 16 14 13 42 42 H 1.09002 * 109.86948 * 219.87830 * 17 16 14 43 43 H 1.08999 * 109.86727 * 98.90432 * 17 16 14 44 44 H 0.97000 * 119.99735 * 179.97438 * 22 21 19 45 45 H 1.08992 * 110.40138 * 141.24798 * 27 18 17 46 46 H 1.09001 * 110.40009 * 263.54912 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6048 1.1472 -0.0005 5 8 4.3043 2.3077 0.0000 6 7 4.2548 -0.0066 -0.0016 7 6 3.6204 -1.1601 0.0038 8 6 4.4080 -2.4449 0.0095 9 6 2.2256 -1.2044 -0.0016 10 6 1.5171 -2.4994 -0.0023 11 8 1.2250 -3.0321 -1.0554 12 7 1.1941 -3.0915 1.1647 13 6 0.5070 -4.3489 1.5304 14 6 1.2588 -4.2379 2.8511 15 6 1.3866 -2.7425 2.5888 16 6 2.5745 -5.0292 2.9547 17 6 2.1279 -6.3387 3.6445 18 7 0.8515 -6.0672 4.3241 19 6 0.1173 -6.9790 5.0345 20 1 -0.8114 -6.6808 5.4984 21 6 0.5665 -8.2865 5.1585 22 7 1.6985 -8.6498 4.5937 23 14 -0.4348 -9.5301 6.1283 24 1 -1.6569 -8.8751 6.6599 25 1 -0.8231 -10.6543 5.2391 26 1 0.3795 -10.0497 7.2562 27 6 0.4915 -4.6500 4.1138 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6935 2.1313 0.0007 32 1 4.5077 2.6440 0.8835 33 1 4.6019 -2.7568 -1.0168 34 1 5.3547 -2.2886 0.5267 35 1 3.8371 -3.2188 0.5227 36 1 0.8034 -5.2055 0.9249 37 1 -0.5741 -4.2502 1.6290 38 1 0.5750 -2.1501 3.0111 39 1 2.3736 -2.3383 2.8142 40 1 3.2984 -4.4955 3.5705 41 1 2.9838 -5.2337 1.9653 42 1 2.8773 -6.6477 4.3733 43 1 1.9913 -7.1221 2.8990 44 1 2.0125 -9.5635 4.6807 45 1 -0.5823 -4.5503 3.9553 46 1 0.8066 -4.0475 4.9657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073449103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:36 Heat of formation + Delta-G solvation = -0.269179 kcal Electronic energy + Delta-G solvation = -28873.419781 eV Core-core repulsion = 24957.410426 eV Total energy + Delta-G solvation = -3916.009355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25191 -41.37180 -39.60088 -38.11746 -37.23410 -35.38322 -34.08651 -33.00896 -31.20807 -30.21946 -29.08758 -28.87458 -27.36541 -27.27218 -25.52446 -24.28449 -22.40991 -22.12319 -20.97471 -19.75658 -19.42546 -18.62411 -18.42927 -18.25624 -17.47637 -16.76980 -16.66020 -16.46484 -16.06944 -15.57362 -15.22990 -15.09182 -14.77931 -14.49241 -14.31973 -14.21562 -13.99169 -13.86280 -13.71634 -13.63278 -13.37610 -13.27781 -13.15287 -12.95986 -12.85696 -12.80310 -12.62323 -12.36484 -11.96751 -11.93905 -11.78501 -11.69351 -11.32077 -11.10783 -10.67106 -10.64108 -10.52442 -9.92048 -9.77995 -8.83486 -7.80651 -5.14980 -0.33549 0.03464 1.37543 1.48786 1.49270 1.59183 1.66256 2.32885 2.52649 2.56800 3.19246 3.31846 3.36444 3.43782 3.48071 3.61892 3.82045 3.97084 4.06895 4.14154 4.21040 4.25647 4.34300 4.40302 4.52053 4.52426 4.54021 4.62835 4.64671 4.69722 4.76572 4.81552 4.86754 4.94768 4.95771 5.04812 5.07820 5.11477 5.18899 5.23445 5.40319 5.51987 5.70394 5.82318 6.24162 6.54380 6.58001 6.80174 6.93667 7.14868 7.83103 8.46562 9.29833 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.002731 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.964908 B =10251.381140 C =10518.757153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.011 3.989 3 C -0.185 4.185 4 C 0.328 3.672 5 O -0.487 6.487 6 N -0.529 5.529 7 C 0.186 3.814 8 C -0.111 4.111 9 C -0.200 4.200 10 C 0.597 3.403 11 O -0.580 6.580 12 N -0.627 5.627 13 C 0.127 3.873 14 C -0.096 4.096 15 C 0.133 3.867 16 C -0.104 4.104 17 C 0.188 3.812 18 N -0.626 5.626 19 C -0.231 4.231 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.973 3.027 24 H -0.262 1.262 25 H -0.298 1.298 26 H -0.296 1.296 27 C 0.150 3.850 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.053 0.947 31 H 0.179 0.821 32 H 0.425 0.575 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.006 0.994 43 H 0.005 0.995 44 H 0.244 0.756 45 H 0.054 0.946 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 24.021 -5.254 24.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.003 3.997 3 C -0.206 4.206 4 C 0.150 3.850 5 O -0.298 6.298 6 N -0.250 5.250 7 C 0.048 3.952 8 C -0.168 4.168 9 C -0.205 4.205 10 C 0.386 3.614 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.005 3.995 14 C -0.097 4.097 15 C 0.011 3.989 16 C -0.142 4.142 17 C 0.063 3.937 18 N -0.353 5.353 19 C -0.361 4.361 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.603 5.603 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.223 1.223 27 C 0.025 3.975 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.197 0.803 32 H 0.288 0.712 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.182 23.681 -6.505 24.587 hybrid contribution -0.857 -1.426 0.726 1.815 sum 0.326 22.255 -5.778 22.995 Atomic orbital electron populations 1.20990 0.87838 1.04184 1.04755 1.20469 0.98032 0.90354 0.90848 1.22107 0.93087 1.00068 1.05298 1.19505 0.87842 0.85006 0.92678 1.84684 1.75843 1.33065 1.36183 1.66998 1.42534 0.98379 1.17095 1.21096 0.89270 0.93469 0.91400 1.20862 1.00876 0.91221 1.03881 1.20576 0.94905 0.93907 1.11152 1.17724 0.77907 0.83618 0.82117 1.90798 1.57215 1.66004 1.32070 1.50239 1.56641 1.23450 1.05696 1.23002 0.98094 0.85730 0.92647 1.22341 0.96895 0.95743 0.94749 1.23201 1.04252 0.94849 0.76593 1.22380 0.95575 0.95888 1.00325 1.20903 0.86797 0.92794 0.93232 1.44832 1.23014 1.06596 1.60847 1.19497 1.02564 0.89993 1.24015 0.89499 1.25610 0.98786 0.99372 1.02487 1.70197 1.22938 1.17179 1.49939 0.85072 0.78188 0.78965 0.77508 1.18664 1.22511 1.22302 1.21409 0.97507 0.84691 0.93924 0.87763 0.87802 0.92797 0.80346 0.71241 0.89892 0.88420 0.90905 0.92086 0.88020 0.86103 0.88439 0.89772 0.91558 0.97607 0.97707 0.94712 0.92808 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.69 71.24 0.69 -0.99 16 2 C 0.01 0.20 5.95 -19.43 -0.12 0.08 16 3 C -0.18 -2.77 9.72 22.42 0.22 -2.55 16 4 C 0.33 6.16 7.74 84.82 0.66 6.82 16 5 O -0.49 -7.00 13.55 -87.96 -1.19 -8.19 16 6 N -0.53 -12.57 10.28 -295.90 -3.04 -15.62 16 7 C 0.19 4.53 6.82 42.91 0.29 4.82 16 8 C -0.11 -2.54 9.78 71.24 0.70 -1.84 16 9 C -0.20 -4.82 5.38 -19.99 -0.11 -4.93 16 10 C 0.60 17.14 4.55 86.72 0.39 17.54 16 11 O -0.58 -21.73 17.83 -3.95 -0.07 -21.80 16 12 N -0.63 -15.93 3.61 -867.33 -3.13 -19.06 16 13 C 0.13 3.67 8.14 85.91 0.70 4.37 16 14 C -0.10 -2.69 0.99 -52.08 -0.05 -2.74 16 15 C 0.13 2.62 7.97 85.90 0.68 3.31 16 16 C -0.10 -3.44 6.35 31.43 0.20 -3.24 16 17 C 0.19 8.86 5.39 86.80 0.47 9.32 16 18 N -0.63 -29.82 3.41 -693.36 -2.36 -32.18 16 19 C -0.23 -12.32 10.28 84.03 0.86 -11.46 16 20 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 22 N -0.95 -56.79 10.30 21.65 0.22 -56.57 16 23 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 27 C 0.15 5.09 6.66 86.28 0.57 5.67 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.05 1.04 7.18 -2.39 -0.02 1.02 16 31 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.43 1.53 9.06 -74.06 -0.67 0.86 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.76 7.06 -2.38 -0.02 1.74 16 36 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 37 H 0.10 2.66 8.05 -2.38 -0.02 2.64 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.10 1.69 8.12 -2.39 -0.02 1.67 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 42 H 0.01 0.31 7.49 -2.39 -0.02 0.29 16 43 H 0.00 0.26 7.38 -2.39 -0.02 0.24 16 44 H 0.24 14.25 8.31 -92.71 -0.77 13.47 16 45 H 0.05 1.72 8.00 -2.39 -0.02 1.70 16 46 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -77.14 380.43 -0.59 -77.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.33 Total: 7.91 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 6.63 Total: 20.75 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.32 Total: -123.43 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -1.26 Total: -29.98 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -77.14 -0.59 -77.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073449103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.460 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds