Wall clock time and date at job start Tue Mar 31 2020 17:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 120.86010 * 2 1 4 4 C 1.38312 * 119.30869 * 180.02562 * 3 2 1 5 5 N 1.31957 * 121.07837 * 359.97438 * 4 3 2 6 6 C 1.31666 * 121.87848 * 359.76735 * 5 4 3 7 7 C 1.39555 * 120.56564 * 0.49313 * 6 5 4 8 8 C 1.47840 * 120.55833 * 179.76981 * 7 6 5 9 9 O 1.21553 * 120.00186 * 234.29040 * 8 7 6 10 10 N 1.34777 * 119.99888 * 54.29089 * 8 7 6 11 11 C 1.46983 * 120.73993 * 5.71315 * 10 8 7 12 12 C 1.53147 * 108.46068 * 125.43249 * 11 10 8 13 13 C 1.52488 * 109.83348 * 54.48291 * 12 11 10 14 14 H 1.09000 * 108.33177 * 180.87383 * 13 12 11 15 15 O 1.42676 * 110.67980 * 61.56678 * 13 12 11 16 16 C 1.43092 * 113.86944 * 174.57794 * 15 13 12 17 17 C 1.53224 * 109.41492 * 61.68812 * 16 15 13 18 18 N 1.47168 * 108.70616 * 308.36415 * 17 16 15 19 19 C 1.36933 * 121.20787 * 230.88614 * 18 17 16 20 20 H 1.08001 * 120.00209 * 145.06063 * 19 18 17 21 21 C 1.38814 * 119.99645 * 325.06477 * 19 18 17 22 22 N 1.31614 * 120.00625 * 4.46158 * 21 19 18 23 23 Si 1.86798 * 119.99695 * 184.46066 * 21 19 18 24 24 H 1.48499 * 109.47289 * 89.99888 * 23 21 19 25 25 H 1.48504 * 109.47518 * 209.99907 * 23 21 19 26 26 H 1.48502 * 109.47439 * 330.00099 * 23 21 19 27 27 C 1.47576 * 117.58643 * 50.90298 * 18 17 16 28 28 H 1.09000 * 110.28550 * 187.88854 * 27 18 17 29 29 C 1.46803 * 120.74126 * 185.73411 * 10 8 7 30 30 H 1.08999 * 109.46647 * 274.85659 * 1 2 3 31 31 H 1.08996 * 109.46754 * 34.85513 * 1 2 3 32 32 H 1.08997 * 109.47039 * 154.85557 * 1 2 3 33 33 H 1.07999 * 120.34679 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.45880 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.71142 * 180.26724 * 6 5 4 36 36 H 1.09002 * 109.63680 * 5.74036 * 11 10 8 37 37 H 1.09004 * 109.81367 * 245.22762 * 11 10 8 38 38 H 1.09001 * 109.41111 * 294.37376 * 12 11 10 39 39 H 1.09004 * 109.41372 * 174.59117 * 12 11 10 40 40 H 1.08996 * 109.47705 * 301.70001 * 16 15 13 41 41 H 1.09003 * 109.48450 * 181.67560 * 16 15 13 42 42 H 1.09002 * 109.59957 * 188.59726 * 17 16 15 43 43 H 1.09002 * 109.60072 * 68.13151 * 17 16 15 44 44 H 0.96993 * 120.00465 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.52476 * 114.42232 * 29 10 8 46 46 H 1.08996 * 109.52219 * 354.23674 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5995 1.1505 -0.0005 5 7 4.2498 0.0023 -0.0005 6 6 3.6197 -1.1537 0.0045 7 6 2.2250 -1.2018 -0.0003 8 6 1.5176 -2.4999 0.0003 9 8 0.6902 -2.7417 -0.8568 10 7 1.7901 -3.4154 0.9511 11 6 2.6933 -3.0951 2.0656 12 6 1.9606 -3.3782 3.3803 13 6 1.4430 -4.8126 3.3857 14 1 0.9136 -4.9825 4.3232 15 8 2.5241 -5.7388 3.2914 16 6 2.1261 -7.1078 3.4138 17 6 1.1670 -7.4633 2.2730 18 7 0.0874 -6.4639 2.2353 19 6 -1.2287 -6.8416 2.2139 20 1 -1.9700 -6.2455 2.7253 21 6 -1.6099 -7.9909 1.5351 22 7 -0.6973 -8.7646 0.9866 23 14 -3.4182 -8.4393 1.4000 24 1 -3.9905 -7.8248 0.1751 25 1 -3.5579 -9.9158 1.3246 26 1 -4.1441 -7.9337 2.5928 27 6 0.4744 -5.0399 2.2211 28 1 -0.4063 -4.4077 2.3336 29 6 1.1918 -4.7549 0.8966 30 1 -0.3632 0.0870 1.0240 31 1 -0.3633 0.8433 -0.5873 32 1 -0.3633 -0.9303 -0.4366 33 1 1.6967 2.1344 0.0004 34 1 4.1559 2.0762 -0.0001 35 1 4.1871 -2.0727 0.0087 36 1 2.9715 -2.0422 2.0206 37 1 3.5889 -3.7135 2.0048 38 1 1.1216 -2.6900 3.4830 39 1 2.6472 -3.2379 4.2152 40 1 1.6247 -7.2563 4.3701 41 1 3.0065 -7.7484 3.3616 42 1 0.7435 -8.4527 2.4463 43 1 1.7063 -7.4548 1.3258 44 1 -0.9637 -9.5678 0.5125 45 1 1.9743 -5.4973 0.7390 46 1 0.4749 -4.8005 0.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074200371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:50 Heat of formation + Delta-G solvation = -9.022984 kcal Electronic energy + Delta-G solvation = -29839.735982 eV Core-core repulsion = 25923.347034 eV Total energy + Delta-G solvation = -3916.388948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94631 -39.63483 -38.36364 -35.84553 -34.65503 -34.00552 -32.28506 -31.56987 -31.20402 -29.47460 -28.18542 -27.34629 -25.45493 -24.02001 -23.73368 -22.84752 -22.25644 -21.47310 -19.80980 -18.39046 -17.50447 -16.92803 -16.75521 -16.50284 -15.94218 -15.46420 -15.22389 -14.99177 -14.58583 -14.47542 -14.32294 -13.98625 -13.75402 -13.61777 -13.20623 -13.03584 -12.87605 -12.80258 -12.52463 -12.38659 -12.34910 -12.01952 -11.90734 -11.36326 -11.07756 -10.92588 -10.86178 -10.60281 -10.25136 -10.22982 -10.15316 -10.05061 -9.68539 -9.65612 -9.47187 -9.21414 -8.96172 -8.61073 -8.31787 -6.67509 -5.90266 -3.44618 0.65964 0.99714 2.75740 3.14002 3.33180 3.39647 3.40045 3.57660 4.17188 4.30828 4.37675 4.46577 4.49852 4.57192 4.85691 4.94044 5.10857 5.20054 5.26818 5.32943 5.35067 5.41643 5.45905 5.47651 5.61085 5.67885 5.73515 5.76289 5.91918 5.96518 6.03355 6.07592 6.15402 6.16718 6.29066 6.36069 6.41132 6.43755 6.61385 6.70792 6.89990 7.12817 7.55817 7.62336 7.68412 7.69325 7.89591 8.29550 8.36451 9.08497 9.65285 10.26661 11.15388 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003742 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.862685 B = 7480.787819 C = 8478.960886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 C -0.180 4.180 4 C 0.112 3.888 5 N -0.490 5.490 6 C 0.135 3.865 7 C -0.173 4.173 8 C 0.560 3.440 9 O -0.531 6.531 10 N -0.596 5.596 11 C 0.110 3.890 12 C -0.122 4.122 13 C 0.081 3.919 14 H 0.051 0.949 15 O -0.388 6.388 16 C 0.037 3.963 17 C 0.135 3.865 18 N -0.586 5.586 19 C -0.260 4.260 20 H 0.066 0.934 21 C 0.016 3.984 22 N -0.900 5.900 23 Si 0.905 3.095 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.136 3.864 28 H 0.074 0.926 29 C 0.106 3.894 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.026 0.974 44 H 0.257 0.743 45 H 0.072 0.928 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 16.565 2.869 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.004 4.004 3 C -0.200 4.200 4 C -0.044 4.044 5 N -0.199 5.199 6 C -0.023 4.023 7 C -0.179 4.179 8 C 0.347 3.653 9 O -0.409 6.409 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.161 4.161 13 C 0.021 3.979 14 H 0.069 0.931 15 O -0.307 6.307 16 C -0.041 4.041 17 C 0.010 3.990 18 N -0.308 5.308 19 C -0.389 4.389 20 H 0.084 0.916 21 C -0.184 4.184 22 N -0.543 5.543 23 Si 0.734 3.266 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.027 3.973 28 H 0.092 0.908 29 C -0.017 4.017 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.586 16.264 2.300 18.534 hybrid contribution -1.999 -0.411 -0.085 2.043 sum 6.587 15.852 2.215 17.309 Atomic orbital electron populations 1.21088 0.89614 1.05369 1.03168 1.20378 0.97205 0.91398 0.91375 1.22001 0.95579 0.98530 1.03878 1.22898 0.91714 0.96397 0.93425 1.67714 1.40724 0.98243 1.13188 1.22979 0.90166 0.96616 0.92525 1.20961 0.95598 0.94590 1.06727 1.18088 0.82212 0.83130 0.81911 1.90782 1.33521 1.78657 1.37903 1.48263 1.46341 1.14157 1.24062 1.21737 0.93155 1.00648 0.85747 1.21792 1.00957 0.95823 0.97490 1.22192 0.88747 0.88294 0.98657 0.93131 1.87711 1.32445 1.16208 1.94367 1.23400 0.99070 0.81608 0.99992 1.21609 0.87937 0.95943 0.93486 1.44180 1.02731 0.98039 1.85855 1.19106 0.83550 1.09100 1.27136 0.91613 1.25340 0.97683 0.98727 0.96648 1.69873 1.31653 1.14712 1.38048 0.86268 0.84836 0.77284 0.78238 1.21059 1.21561 1.20362 1.21599 0.95212 0.88850 0.91651 0.90759 1.22375 0.98149 0.79971 1.01198 0.90279 0.90653 0.88706 0.84289 0.82448 0.82194 0.90588 0.90276 0.90581 0.90346 0.94226 0.90205 0.87705 0.95551 0.93252 0.90985 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.76 36.01 0.35 -1.15 16 2 C 0.00 0.06 5.95 -103.91 -0.62 -0.56 16 3 C -0.18 -1.64 9.82 -39.50 -0.39 -2.03 16 4 C 0.11 1.04 11.17 -17.47 -0.20 0.85 16 5 N -0.49 -5.74 10.35 -12.91 -0.13 -5.87 16 6 C 0.14 1.65 8.97 -17.13 -0.15 1.50 16 7 C -0.17 -2.33 4.61 -104.82 -0.48 -2.82 16 8 C 0.56 9.29 6.59 -12.33 -0.08 9.21 16 9 O -0.53 -10.76 14.64 5.32 0.08 -10.68 16 10 N -0.60 -9.65 2.96 -173.89 -0.51 -10.17 16 11 C 0.11 1.45 5.47 -3.70 -0.02 1.43 16 12 C -0.12 -1.63 5.82 -26.92 -0.16 -1.78 16 13 C 0.08 1.40 2.71 -26.91 -0.07 1.32 16 14 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 15 O -0.39 -7.08 9.63 -35.23 -0.34 -7.42 16 16 C 0.04 0.70 6.98 37.27 0.26 0.96 16 17 C 0.14 3.10 4.88 -3.56 -0.02 3.09 16 18 N -0.59 -14.06 2.71 -163.91 -0.44 -14.50 16 19 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 20 H 0.07 1.73 7.83 -52.49 -0.41 1.31 16 21 C 0.02 0.42 5.34 -17.43 -0.09 0.33 16 22 N -0.90 -25.03 10.68 55.49 0.59 -24.44 16 23 Si 0.90 21.25 29.56 -169.99 -5.02 16.22 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.14 2.75 3.01 -67.10 -0.20 2.55 16 28 H 0.07 1.55 7.99 -51.93 -0.42 1.14 16 29 C 0.11 2.11 5.64 -3.72 -0.02 2.09 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.09 1.35 5.73 -51.93 -0.30 1.05 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.16 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.16 1.79 7.79 -52.48 -0.41 1.38 16 36 H 0.08 0.87 5.38 -51.93 -0.28 0.59 16 37 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.11 2.67 6.10 -51.93 -0.32 2.36 16 43 H 0.03 0.64 7.18 -51.93 -0.37 0.27 16 44 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.07 1.52 6.59 -51.92 -0.34 1.18 16 46 H 0.09 2.08 6.99 -51.93 -0.36 1.72 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -30.76 359.16 -8.97 -39.73 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.56 Total: 3.75 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.04 Total: 7.96 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.50 Total: -54.98 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.26 Total: -18.10 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.76 -8.97 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.710 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds