Wall clock time and date at job start Tue Mar 31 2020 17:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 120.86010 * 2 1 4 4 C 1.38312 * 119.30869 * 180.02562 * 3 2 1 5 5 N 1.31957 * 121.07837 * 359.97438 * 4 3 2 6 6 C 1.31666 * 121.87848 * 359.76735 * 5 4 3 7 7 C 1.39555 * 120.56564 * 0.49313 * 6 5 4 8 8 C 1.47840 * 120.55833 * 179.76981 * 7 6 5 9 9 O 1.21553 * 120.00186 * 234.29040 * 8 7 6 10 10 N 1.34777 * 119.99888 * 54.29089 * 8 7 6 11 11 C 1.46983 * 120.73993 * 5.71315 * 10 8 7 12 12 C 1.53147 * 108.46068 * 125.43249 * 11 10 8 13 13 C 1.52488 * 109.83348 * 54.48291 * 12 11 10 14 14 H 1.09000 * 108.33177 * 180.87383 * 13 12 11 15 15 O 1.42676 * 110.67980 * 61.56678 * 13 12 11 16 16 C 1.43092 * 113.86944 * 174.57794 * 15 13 12 17 17 C 1.53224 * 109.41492 * 61.68812 * 16 15 13 18 18 N 1.47168 * 108.70616 * 308.36415 * 17 16 15 19 19 C 1.36933 * 121.20787 * 230.88614 * 18 17 16 20 20 H 1.08001 * 120.00209 * 145.06063 * 19 18 17 21 21 C 1.38814 * 119.99645 * 325.06477 * 19 18 17 22 22 N 1.31614 * 120.00625 * 4.46158 * 21 19 18 23 23 Si 1.86798 * 119.99695 * 184.46066 * 21 19 18 24 24 H 1.48499 * 109.47289 * 89.99888 * 23 21 19 25 25 H 1.48504 * 109.47518 * 209.99907 * 23 21 19 26 26 H 1.48502 * 109.47439 * 330.00099 * 23 21 19 27 27 C 1.47576 * 117.58643 * 50.90298 * 18 17 16 28 28 H 1.09000 * 110.28550 * 187.88854 * 27 18 17 29 29 C 1.46803 * 120.74126 * 185.73411 * 10 8 7 30 30 H 1.08999 * 109.46647 * 274.85659 * 1 2 3 31 31 H 1.08996 * 109.46754 * 34.85513 * 1 2 3 32 32 H 1.08997 * 109.47039 * 154.85557 * 1 2 3 33 33 H 1.07999 * 120.34679 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.45880 * 180.02562 * 4 3 2 35 35 H 1.08006 * 119.71142 * 180.26724 * 6 5 4 36 36 H 1.09002 * 109.63680 * 5.74036 * 11 10 8 37 37 H 1.09004 * 109.81367 * 245.22762 * 11 10 8 38 38 H 1.09001 * 109.41111 * 294.37376 * 12 11 10 39 39 H 1.09004 * 109.41372 * 174.59117 * 12 11 10 40 40 H 1.08996 * 109.47705 * 301.70001 * 16 15 13 41 41 H 1.09003 * 109.48450 * 181.67560 * 16 15 13 42 42 H 1.09002 * 109.59957 * 188.59726 * 17 16 15 43 43 H 1.09002 * 109.60072 * 68.13151 * 17 16 15 44 44 H 0.96993 * 120.00465 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.52476 * 114.42232 * 29 10 8 46 46 H 1.08996 * 109.52219 * 354.23674 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1880 0.0000 4 6 3.5995 1.1505 -0.0005 5 7 4.2498 0.0023 -0.0005 6 6 3.6197 -1.1537 0.0045 7 6 2.2250 -1.2018 -0.0003 8 6 1.5176 -2.4999 0.0003 9 8 0.6902 -2.7417 -0.8568 10 7 1.7901 -3.4154 0.9511 11 6 2.6933 -3.0951 2.0656 12 6 1.9606 -3.3782 3.3803 13 6 1.4430 -4.8126 3.3857 14 1 0.9136 -4.9825 4.3232 15 8 2.5241 -5.7388 3.2914 16 6 2.1261 -7.1078 3.4138 17 6 1.1670 -7.4633 2.2730 18 7 0.0874 -6.4639 2.2353 19 6 -1.2287 -6.8416 2.2139 20 1 -1.9700 -6.2455 2.7253 21 6 -1.6099 -7.9909 1.5351 22 7 -0.6973 -8.7646 0.9866 23 14 -3.4182 -8.4393 1.4000 24 1 -3.9905 -7.8248 0.1751 25 1 -3.5579 -9.9158 1.3246 26 1 -4.1441 -7.9337 2.5928 27 6 0.4744 -5.0399 2.2211 28 1 -0.4063 -4.4077 2.3336 29 6 1.1918 -4.7549 0.8966 30 1 -0.3632 0.0870 1.0240 31 1 -0.3633 0.8433 -0.5873 32 1 -0.3633 -0.9303 -0.4366 33 1 1.6967 2.1344 0.0004 34 1 4.1559 2.0762 -0.0001 35 1 4.1871 -2.0727 0.0087 36 1 2.9715 -2.0422 2.0206 37 1 3.5889 -3.7135 2.0048 38 1 1.1216 -2.6900 3.4830 39 1 2.6472 -3.2379 4.2152 40 1 1.6247 -7.2563 4.3701 41 1 3.0065 -7.7484 3.3616 42 1 0.7435 -8.4527 2.4463 43 1 1.7063 -7.4548 1.3258 44 1 -0.9637 -9.5678 0.5125 45 1 1.9743 -5.4973 0.7390 46 1 0.4749 -4.8005 0.0768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074200371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:49 Heat of formation + Delta-G solvation = -28.990054 kcal Electronic energy + Delta-G solvation = -29840.601820 eV Core-core repulsion = 25923.347034 eV Total energy + Delta-G solvation = -3917.254786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05306 -40.90806 -39.71982 -37.25434 -36.44633 -34.88678 -33.71615 -33.19854 -32.38279 -30.97284 -29.38603 -28.82310 -26.73791 -25.66622 -24.92015 -24.36138 -23.20559 -22.93504 -21.18027 -19.84656 -18.98415 -18.56989 -17.73730 -17.35520 -17.21303 -17.10459 -16.92946 -16.40766 -16.14907 -15.67933 -15.52162 -15.14319 -15.09106 -14.87791 -14.82996 -14.36144 -14.02130 -13.87167 -13.81196 -13.68631 -13.53998 -13.40533 -12.99939 -12.93382 -12.82222 -12.62810 -12.47000 -12.25783 -12.10310 -11.92466 -11.73993 -11.27273 -11.23955 -10.67965 -10.57746 -10.53553 -10.42865 -10.12503 -9.76729 -8.60941 -7.94504 -5.52062 -0.21773 0.17100 1.41289 1.44998 1.51039 1.52197 1.85753 2.42800 2.71973 2.88079 3.21614 3.25963 3.45987 3.52432 3.65428 3.77357 3.83145 3.94423 4.05598 4.11451 4.15940 4.24440 4.38996 4.44282 4.47778 4.53959 4.57703 4.61878 4.64660 4.71505 4.75826 4.83591 4.85963 4.88409 4.94337 5.03080 5.12542 5.20358 5.29408 5.30851 5.41651 5.56906 5.63113 5.65955 6.29002 6.32736 6.38823 6.86693 7.00138 7.06771 7.68505 8.26405 9.08211 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003742 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.862685 B = 7480.787819 C = 8478.960886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.005 4.005 3 C -0.166 4.166 4 C 0.118 3.882 5 N -0.504 5.504 6 C 0.134 3.866 7 C -0.193 4.193 8 C 0.561 3.439 9 O -0.579 6.579 10 N -0.594 5.594 11 C 0.111 3.889 12 C -0.114 4.114 13 C 0.086 3.914 14 H 0.049 0.951 15 O -0.383 6.383 16 C 0.050 3.950 17 C 0.143 3.857 18 N -0.604 5.604 19 C -0.271 4.271 20 H 0.065 0.935 21 C -0.035 4.035 22 N -0.927 5.927 23 Si 0.966 3.034 24 H -0.290 1.290 25 H -0.289 1.289 26 H -0.266 1.266 27 C 0.134 3.866 28 H 0.063 0.937 29 C 0.126 3.874 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.177 0.823 34 H 0.197 0.803 35 H 0.163 0.837 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.000 1.000 44 H 0.253 0.747 45 H 0.055 0.945 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.359 20.076 4.484 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.014 4.014 3 C -0.185 4.185 4 C -0.037 4.037 5 N -0.213 5.213 6 C -0.023 4.023 7 C -0.199 4.199 8 C 0.349 3.651 9 O -0.460 6.460 10 N -0.326 5.326 11 C -0.010 4.010 12 C -0.153 4.153 13 C 0.026 3.974 14 H 0.067 0.933 15 O -0.302 6.302 16 C -0.028 4.028 17 C 0.018 3.982 18 N -0.327 5.327 19 C -0.401 4.401 20 H 0.082 0.918 21 C -0.232 4.232 22 N -0.571 5.571 23 Si 0.793 3.207 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.191 1.191 27 C 0.026 3.974 28 H 0.081 0.919 29 C 0.001 3.999 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.194 0.806 34 H 0.213 0.787 35 H 0.180 0.820 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.984 19.809 3.954 22.533 hybrid contribution -2.406 -1.372 -0.631 2.841 sum 7.578 18.438 3.323 20.209 Atomic orbital electron populations 1.21055 0.89630 1.04298 1.04007 1.20596 0.97463 0.91783 0.91531 1.22352 0.95546 0.98799 1.01805 1.23595 0.92217 0.96884 0.91022 1.67797 1.41040 0.98666 1.13834 1.22976 0.89439 0.97335 0.92584 1.20698 0.96070 0.93134 1.09949 1.18653 0.81478 0.84129 0.80822 1.90754 1.35810 1.79749 1.39667 1.48236 1.46518 1.12581 1.25235 1.21948 0.92409 1.02344 0.84307 1.21827 1.02101 0.92752 0.98585 1.22211 0.88079 0.90527 0.96559 0.93260 1.87729 1.32474 1.15818 1.94159 1.23219 0.99090 0.82527 0.97958 1.21397 0.88144 0.94642 0.94031 1.44384 1.02303 0.99780 1.86263 1.19380 0.84861 1.09011 1.26835 0.91781 1.26028 1.01296 0.98998 0.96834 1.70045 1.33112 1.14957 1.39003 0.85307 0.80511 0.76760 0.78090 1.21696 1.21470 1.19088 1.21709 0.95781 0.86656 0.93227 0.91893 1.21784 0.96680 0.81969 0.99487 0.89091 0.88179 0.92626 0.80585 0.78651 0.81981 0.87933 0.89876 0.89356 0.87056 0.93793 0.87482 0.90602 0.98145 0.93759 0.92631 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.76 71.24 0.69 -2.08 16 2 C -0.01 -0.11 5.95 -19.40 -0.12 -0.23 16 3 C -0.17 -2.30 9.82 22.32 0.22 -2.08 16 4 C 0.12 1.68 11.17 84.69 0.95 2.62 16 5 N -0.50 -10.22 10.35 -194.75 -2.01 -12.24 16 6 C 0.13 3.04 8.97 85.04 0.76 3.81 16 7 C -0.19 -5.00 4.61 -19.99 -0.09 -5.10 16 8 C 0.56 19.18 6.59 86.78 0.57 19.75 16 9 O -0.58 -25.09 14.64 -3.88 -0.06 -25.14 16 10 N -0.59 -19.62 2.96 -822.35 -2.44 -22.05 16 11 C 0.11 2.72 5.47 86.34 0.47 3.19 16 12 C -0.11 -2.74 5.82 30.47 0.18 -2.56 16 13 C 0.09 2.87 2.71 30.48 0.08 2.95 16 14 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 15 O -0.38 -13.44 9.63 -148.98 -1.43 -14.88 16 16 C 0.05 1.86 6.98 72.06 0.50 2.36 16 17 C 0.14 6.84 4.88 86.33 0.42 7.26 16 18 N -0.60 -30.26 2.71 -672.49 -1.82 -32.09 16 19 C -0.27 -14.93 9.65 84.03 0.81 -14.12 16 20 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 21 C -0.03 -1.94 5.34 84.86 0.45 -1.49 16 22 N -0.93 -54.03 10.68 21.65 0.23 -53.79 16 23 Si 0.97 45.04 29.56 68.60 2.03 47.07 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C 0.13 5.63 3.01 44.94 0.14 5.76 16 28 H 0.06 2.74 7.99 -2.39 -0.02 2.73 16 29 C 0.13 5.29 5.64 86.42 0.49 5.78 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.05 1.63 5.73 -2.39 -0.01 1.62 16 33 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.16 3.44 7.79 -2.91 -0.02 3.42 16 36 H 0.10 2.04 5.38 -2.39 -0.01 2.03 16 37 H 0.08 2.01 7.96 -2.38 -0.02 1.99 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 42 H 0.08 4.07 6.10 -2.39 -0.01 4.05 16 43 H 0.00 0.02 7.18 -2.39 -0.02 0.01 16 44 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.06 2.50 6.59 -2.38 -0.02 2.48 16 46 H 0.05 2.38 6.99 -2.39 -0.02 2.37 16 Total: -1.00 -72.23 359.16 2.02 -70.22 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.99 Total: 17.07 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 6.53 Total: 25.83 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -6.04 Total: -120.17 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.49 Total: -40.02 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.23 2.02 -70.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.229 kcal (2) G-P(sol) polarization free energy of solvation -72.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds