Wall clock time and date at job start Tue Mar 31 2020 17:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 120.85627 * 2 1 4 4 C 1.38317 * 119.30502 * 180.25088 * 3 2 1 5 5 N 1.31960 * 121.07831 * 359.77098 * 4 3 2 6 6 C 1.31667 * 121.88114 * 359.97314 * 5 4 3 7 7 C 1.39559 * 120.56753 * 0.02562 * 6 5 4 8 8 C 1.47836 * 120.56178 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99764 * 126.16852 * 8 7 6 10 10 N 1.34775 * 120.00024 * 306.16688 * 8 7 6 11 11 C 1.46833 * 120.40745 * 354.16326 * 10 8 7 12 12 C 1.53362 * 109.24951 * 232.21787 * 11 10 8 13 13 C 1.52786 * 108.81260 * 306.16942 * 12 11 10 14 14 H 1.09000 * 109.34064 * 303.34002 * 13 12 11 15 15 O 1.42603 * 111.11913 * 182.56000 * 13 12 11 16 16 C 1.43146 * 113.63549 * 176.38854 * 15 13 12 17 17 C 1.53194 * 109.69258 * 61.71413 * 16 15 13 18 18 N 1.47335 * 108.81284 * 308.69990 * 17 16 15 19 19 C 1.36935 * 121.34910 * 230.31296 * 18 17 16 20 20 H 1.07991 * 120.00629 * 145.05364 * 19 18 17 21 21 C 1.38821 * 119.99614 * 325.04805 * 19 18 17 22 22 N 1.31619 * 119.99923 * 4.40631 * 21 19 18 23 23 Si 1.86795 * 119.99843 * 184.39855 * 21 19 18 24 24 H 1.48505 * 109.47235 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46616 * 120.00247 * 23 21 19 26 26 H 1.48497 * 109.47446 * 239.99998 * 23 21 19 27 27 C 1.46876 * 117.34922 * 50.32723 * 18 17 16 28 28 H 1.09003 * 110.21045 * 67.95712 * 27 18 17 29 29 C 1.47127 * 120.40230 * 174.14031 * 10 8 7 30 30 H 1.09001 * 109.47148 * 275.13304 * 1 2 3 31 31 H 1.09003 * 109.46767 * 35.13242 * 1 2 3 32 32 H 1.09006 * 109.46798 * 155.13256 * 1 2 3 33 33 H 1.07992 * 120.34811 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.46317 * 179.74400 * 4 3 2 35 35 H 1.07997 * 119.71360 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.50739 * 112.28233 * 11 10 8 37 37 H 1.09003 * 109.54632 * 352.17098 * 11 10 8 38 38 H 1.09000 * 109.58196 * 186.37139 * 12 11 10 39 39 H 1.09003 * 109.58177 * 65.97089 * 12 11 10 40 40 H 1.08999 * 109.43168 * 181.76659 * 16 15 13 41 41 H 1.09004 * 109.42419 * 301.66053 * 16 15 13 42 42 H 1.08993 * 109.58980 * 68.55300 * 17 16 15 43 43 H 1.09006 * 109.58197 * 188.96652 * 17 16 15 44 44 H 0.96996 * 119.99620 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.72476 * 246.46001 * 29 10 8 46 46 H 1.08997 * 109.73064 * 7.09119 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5995 1.1507 -0.0053 5 7 4.2498 0.0024 -0.0058 6 6 3.6197 -1.1537 -0.0008 7 6 2.2250 -1.2018 0.0047 8 6 1.5177 -2.4999 0.0109 9 8 0.6846 -2.7341 0.8646 10 7 1.7964 -3.4237 -0.9300 11 6 2.7050 -3.1048 -2.0385 12 6 2.0207 -3.4470 -3.3676 13 6 1.5496 -4.8996 -3.3195 14 1 2.3996 -5.5480 -3.1072 15 8 0.9565 -5.2886 -4.5566 16 6 0.5692 -6.6660 -4.5994 17 6 -0.4872 -6.9389 -3.5239 18 7 0.0076 -6.4312 -2.2323 19 6 -0.0042 -7.2128 -1.1080 20 1 0.7879 -7.1229 -0.3795 21 6 -1.0345 -8.1206 -0.9046 22 7 -1.9528 -8.2925 -1.8317 23 14 -1.1176 -9.0983 0.6849 24 1 0.0240 -8.7228 1.5573 25 1 -2.3934 -8.7992 1.3837 26 1 -1.0500 -10.5495 0.3776 27 6 0.5140 -5.0529 -2.1983 28 1 -0.3024 -4.3478 -2.3543 29 6 1.1944 -4.7643 -0.8587 30 1 -0.3633 0.0919 1.0236 31 1 -0.3633 0.8405 -0.5914 32 1 -0.3633 -0.9325 -0.4322 33 1 1.6966 2.1345 -0.0004 34 1 4.1559 2.0762 -0.0095 35 1 4.1872 -2.0726 -0.0010 36 1 3.6198 -3.6891 -1.9390 37 1 2.9476 -2.0423 -2.0170 38 1 2.7287 -3.3196 -4.1865 39 1 1.1640 -2.7898 -3.5173 40 1 0.1548 -6.8960 -5.5810 41 1 1.4417 -7.2937 -4.4180 42 1 -1.4150 -6.4305 -3.7858 43 1 -0.6645 -8.0119 -3.4499 44 1 -2.6729 -8.9265 -1.6894 45 1 1.9705 -5.5067 -0.6728 46 1 0.4569 -4.7943 -0.0567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074200372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:54 Heat of formation + Delta-G solvation = -9.352073 kcal Electronic energy + Delta-G solvation = -29712.036204 eV Core-core repulsion = 25795.632986 eV Total energy + Delta-G solvation = -3916.403219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01127 -39.61796 -38.39889 -36.15162 -34.71934 -34.06840 -32.38740 -31.45330 -31.19749 -29.81098 -28.19591 -27.07914 -25.60677 -24.14111 -23.88475 -22.58726 -21.96206 -21.36400 -19.78306 -19.26587 -17.57289 -16.92969 -16.75485 -16.56075 -15.99817 -15.43606 -15.31199 -14.98652 -14.57878 -14.42541 -14.34642 -13.95947 -13.68983 -13.62170 -13.09769 -13.06874 -12.92494 -12.88826 -12.83847 -12.64815 -12.42849 -11.92882 -11.89459 -11.34606 -11.11399 -10.91917 -10.87234 -10.62035 -10.27578 -10.25614 -10.16654 -10.10176 -9.73078 -9.65238 -9.54587 -9.28102 -8.96946 -8.57220 -8.42100 -6.65833 -5.88603 -3.42806 0.60508 0.95245 2.67504 3.01456 3.32984 3.41762 3.42849 3.52579 4.10085 4.23616 4.39164 4.39508 4.45461 4.51337 4.80049 4.84179 5.11847 5.15831 5.27477 5.28990 5.30760 5.37974 5.42770 5.46587 5.50603 5.63220 5.66581 5.72541 5.83143 5.90161 5.91541 6.06639 6.09905 6.12588 6.23598 6.33667 6.35267 6.45228 6.59788 6.66037 6.84566 7.16248 7.47205 7.57655 7.63888 7.69064 7.89892 8.20087 8.36364 9.09290 9.68148 10.29649 11.17908 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.003852 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.247907 B = 7266.844256 C = 8319.545378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.006 3.994 3 C -0.179 4.179 4 C 0.113 3.887 5 N -0.490 5.490 6 C 0.135 3.865 7 C -0.175 4.175 8 C 0.562 3.438 9 O -0.524 6.524 10 N -0.603 5.603 11 C 0.109 3.891 12 C -0.123 4.123 13 C 0.077 3.923 14 H 0.052 0.948 15 O -0.390 6.390 16 C 0.037 3.963 17 C 0.140 3.860 18 N -0.589 5.589 19 C -0.261 4.261 20 H 0.070 0.930 21 C 0.016 3.984 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.289 1.289 27 C 0.138 3.862 28 H 0.036 0.964 29 C 0.124 3.876 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.025 0.975 43 H 0.105 0.895 44 H 0.256 0.744 45 H 0.075 0.925 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.941 16.126 -1.367 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.003 4.003 3 C -0.199 4.199 4 C -0.043 4.043 5 N -0.199 5.199 6 C -0.024 4.024 7 C -0.180 4.180 8 C 0.349 3.651 9 O -0.400 6.400 10 N -0.336 5.336 11 C -0.014 4.014 12 C -0.162 4.162 13 C 0.017 3.983 14 H 0.070 0.930 15 O -0.309 6.309 16 C -0.041 4.041 17 C 0.015 3.985 18 N -0.313 5.313 19 C -0.390 4.390 20 H 0.087 0.913 21 C -0.184 4.184 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.200 1.200 25 H -0.213 1.213 26 H -0.216 1.216 27 C 0.030 3.970 28 H 0.054 0.946 29 C 0.003 3.997 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.043 0.957 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.214 15.977 -1.042 18.991 hybrid contribution -1.036 -0.765 0.883 1.561 sum 9.178 15.212 -0.159 17.767 Atomic orbital electron populations 1.20918 0.89420 1.03803 1.03664 1.20400 0.97216 0.91426 0.91246 1.22006 0.95575 0.98539 1.03756 1.22909 0.91710 0.96404 0.93273 1.67716 1.40700 0.98241 1.13204 1.22973 0.90106 0.96655 0.92620 1.20956 0.95617 0.94440 1.07037 1.18068 0.82120 0.83069 0.81872 1.90825 1.32657 1.78908 1.37627 1.48235 1.46577 1.13979 1.24825 1.21795 0.92601 1.01306 0.85676 1.21829 1.01200 0.96540 0.96597 1.22413 0.95538 0.94068 0.86303 0.92995 1.87736 1.80700 1.27936 1.34536 1.23398 0.98766 0.81341 1.00573 1.21579 0.92127 1.02115 0.82695 1.43941 1.74339 1.06758 1.06297 1.19108 1.04402 1.16713 0.98820 0.91256 1.25331 0.95257 1.00324 0.97475 1.69903 1.14712 1.37213 1.32541 0.86227 0.77902 0.79218 0.83531 1.20027 1.21315 1.21566 1.21301 0.94265 0.89344 0.92081 0.94602 1.21834 0.98306 0.79727 0.99867 0.89570 0.90770 0.90440 0.84186 0.82375 0.82190 0.90866 0.89781 0.90156 0.90903 0.90164 0.94203 0.95663 0.87741 0.93368 0.90706 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.36 36.01 0.34 -0.99 16 2 C 0.01 0.06 5.95 -103.91 -0.62 -0.56 16 3 C -0.18 -1.57 9.82 -39.49 -0.39 -1.96 16 4 C 0.11 1.00 11.17 -17.47 -0.20 0.81 16 5 N -0.49 -5.45 10.35 -12.91 -0.13 -5.58 16 6 C 0.13 1.54 8.99 -17.13 -0.15 1.39 16 7 C -0.18 -2.26 4.59 -104.82 -0.48 -2.74 16 8 C 0.56 9.01 6.17 -12.33 -0.08 8.93 16 9 O -0.52 -10.34 15.48 5.31 0.08 -10.26 16 10 N -0.60 -9.35 2.98 -173.81 -0.52 -9.86 16 11 C 0.11 1.33 5.53 -3.67 -0.02 1.31 16 12 C -0.12 -1.70 5.82 -26.65 -0.16 -1.85 16 13 C 0.08 1.37 2.48 -26.64 -0.07 1.30 16 14 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 15 O -0.39 -7.64 10.49 -35.23 -0.37 -8.01 16 16 C 0.04 0.73 6.96 37.26 0.26 0.98 16 17 C 0.14 3.32 5.39 -3.49 -0.02 3.30 16 18 N -0.59 -14.41 3.04 -164.37 -0.50 -14.91 16 19 C -0.26 -6.87 8.71 -15.06 -0.13 -7.00 16 20 H 0.07 1.77 6.43 -52.49 -0.34 1.44 16 21 C 0.02 0.43 5.34 -17.43 -0.09 0.33 16 22 N -0.90 -25.33 10.70 55.49 0.59 -24.74 16 23 Si 0.90 21.36 29.56 -169.99 -5.02 16.34 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.14 2.88 3.02 -67.52 -0.20 2.68 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 C 0.12 2.36 4.58 -3.70 -0.02 2.34 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.08 1.04 6.71 -51.93 -0.35 0.69 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 1.60 7.75 -52.49 -0.41 1.20 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.89 5.42 -51.93 -0.28 0.61 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 2.70 6.15 -51.93 -0.32 2.38 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 45 H 0.07 1.41 7.34 -51.93 -0.38 1.03 16 46 H 0.10 2.30 6.81 -51.93 -0.35 1.95 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -31.66 360.22 -9.10 -40.76 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.64 Total: 2.55 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -2.02 Total: 8.29 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.56 Total: -55.10 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.66 -9.10 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.405 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds