Wall clock time and date at job start Tue Mar 31 2020 17:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38399 * 120.85627 * 2 1 4 4 C 1.38317 * 119.30502 * 180.25088 * 3 2 1 5 5 N 1.31960 * 121.07831 * 359.77098 * 4 3 2 6 6 C 1.31667 * 121.88114 * 359.97314 * 5 4 3 7 7 C 1.39559 * 120.56753 * 0.02562 * 6 5 4 8 8 C 1.47836 * 120.56178 * 180.02562 * 7 6 5 9 9 O 1.21558 * 119.99764 * 126.16852 * 8 7 6 10 10 N 1.34775 * 120.00024 * 306.16688 * 8 7 6 11 11 C 1.46833 * 120.40745 * 354.16326 * 10 8 7 12 12 C 1.53362 * 109.24951 * 232.21787 * 11 10 8 13 13 C 1.52786 * 108.81260 * 306.16942 * 12 11 10 14 14 H 1.09000 * 109.34064 * 303.34002 * 13 12 11 15 15 O 1.42603 * 111.11913 * 182.56000 * 13 12 11 16 16 C 1.43146 * 113.63549 * 176.38854 * 15 13 12 17 17 C 1.53194 * 109.69258 * 61.71413 * 16 15 13 18 18 N 1.47335 * 108.81284 * 308.69990 * 17 16 15 19 19 C 1.36935 * 121.34910 * 230.31296 * 18 17 16 20 20 H 1.07991 * 120.00629 * 145.05364 * 19 18 17 21 21 C 1.38821 * 119.99614 * 325.04805 * 19 18 17 22 22 N 1.31619 * 119.99923 * 4.40631 * 21 19 18 23 23 Si 1.86795 * 119.99843 * 184.39855 * 21 19 18 24 24 H 1.48505 * 109.47235 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46616 * 120.00247 * 23 21 19 26 26 H 1.48497 * 109.47446 * 239.99998 * 23 21 19 27 27 C 1.46876 * 117.34922 * 50.32723 * 18 17 16 28 28 H 1.09003 * 110.21045 * 67.95712 * 27 18 17 29 29 C 1.47127 * 120.40230 * 174.14031 * 10 8 7 30 30 H 1.09001 * 109.47148 * 275.13304 * 1 2 3 31 31 H 1.09003 * 109.46767 * 35.13242 * 1 2 3 32 32 H 1.09006 * 109.46798 * 155.13256 * 1 2 3 33 33 H 1.07992 * 120.34811 * 359.97438 * 3 2 1 34 34 H 1.07996 * 119.46317 * 179.74400 * 4 3 2 35 35 H 1.07997 * 119.71360 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.50739 * 112.28233 * 11 10 8 37 37 H 1.09003 * 109.54632 * 352.17098 * 11 10 8 38 38 H 1.09000 * 109.58196 * 186.37139 * 12 11 10 39 39 H 1.09003 * 109.58177 * 65.97089 * 12 11 10 40 40 H 1.08999 * 109.43168 * 181.76659 * 16 15 13 41 41 H 1.09004 * 109.42419 * 301.66053 * 16 15 13 42 42 H 1.08993 * 109.58980 * 68.55300 * 17 16 15 43 43 H 1.09006 * 109.58197 * 188.96652 * 17 16 15 44 44 H 0.96996 * 119.99620 * 180.02562 * 22 21 19 45 45 H 1.09002 * 109.72476 * 246.46001 * 29 10 8 46 46 H 1.08997 * 109.73064 * 7.09119 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5995 1.1507 -0.0053 5 7 4.2498 0.0024 -0.0058 6 6 3.6197 -1.1537 -0.0008 7 6 2.2250 -1.2018 0.0047 8 6 1.5177 -2.4999 0.0109 9 8 0.6846 -2.7341 0.8646 10 7 1.7964 -3.4237 -0.9300 11 6 2.7050 -3.1048 -2.0385 12 6 2.0207 -3.4470 -3.3676 13 6 1.5496 -4.8996 -3.3195 14 1 2.3996 -5.5480 -3.1072 15 8 0.9565 -5.2886 -4.5566 16 6 0.5692 -6.6660 -4.5994 17 6 -0.4872 -6.9389 -3.5239 18 7 0.0076 -6.4312 -2.2323 19 6 -0.0042 -7.2128 -1.1080 20 1 0.7879 -7.1229 -0.3795 21 6 -1.0345 -8.1206 -0.9046 22 7 -1.9528 -8.2925 -1.8317 23 14 -1.1176 -9.0983 0.6849 24 1 0.0240 -8.7228 1.5573 25 1 -2.3934 -8.7992 1.3837 26 1 -1.0500 -10.5495 0.3776 27 6 0.5140 -5.0529 -2.1983 28 1 -0.3024 -4.3478 -2.3543 29 6 1.1944 -4.7643 -0.8587 30 1 -0.3633 0.0919 1.0236 31 1 -0.3633 0.8405 -0.5914 32 1 -0.3633 -0.9325 -0.4322 33 1 1.6966 2.1345 -0.0004 34 1 4.1559 2.0762 -0.0095 35 1 4.1872 -2.0726 -0.0010 36 1 3.6198 -3.6891 -1.9390 37 1 2.9476 -2.0423 -2.0170 38 1 2.7287 -3.3196 -4.1865 39 1 1.1640 -2.7898 -3.5173 40 1 0.1548 -6.8960 -5.5810 41 1 1.4417 -7.2937 -4.4180 42 1 -1.4150 -6.4305 -3.7858 43 1 -0.6645 -8.0119 -3.4499 44 1 -2.6729 -8.9265 -1.6894 45 1 1.9705 -5.5067 -0.6728 46 1 0.4569 -4.7943 -0.0567 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074200372.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:53 Heat of formation + Delta-G solvation = -30.628449 kcal Electronic energy + Delta-G solvation = -29712.958817 eV Core-core repulsion = 25795.632986 eV Total energy + Delta-G solvation = -3917.325832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06879 -40.86550 -39.76772 -37.53674 -36.54693 -34.91609 -33.77336 -33.13122 -32.34828 -31.30696 -29.21772 -28.72959 -27.00373 -25.62860 -25.06265 -23.80276 -23.18053 -22.75929 -21.49034 -20.47875 -18.82963 -18.63912 -17.72893 -17.47411 -17.26549 -17.08144 -16.88472 -16.41791 -16.05997 -15.72556 -15.44733 -15.28448 -15.09647 -14.87261 -14.68166 -14.63538 -14.06449 -14.01348 -13.85579 -13.70456 -13.59976 -13.33922 -13.00521 -12.93669 -12.78874 -12.69094 -12.44701 -12.33430 -12.04979 -11.97394 -11.81877 -11.32629 -11.31190 -10.67961 -10.58975 -10.56214 -10.44989 -10.12385 -9.80026 -8.65511 -7.94643 -5.51768 -0.22844 0.16388 1.40815 1.44729 1.47457 1.53279 1.79029 2.42424 2.70961 2.80186 3.21774 3.25272 3.42372 3.52241 3.63014 3.74910 3.80556 3.88368 4.00733 4.07161 4.16429 4.19806 4.36081 4.40319 4.43316 4.49812 4.52900 4.55598 4.60710 4.61775 4.71541 4.77354 4.84653 4.85127 4.96379 5.04781 5.07700 5.12574 5.24408 5.27064 5.38549 5.58704 5.61297 5.62024 6.24043 6.26373 6.36697 6.85891 6.96562 7.05347 7.68331 8.27314 9.09988 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.003852 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.247907 B = 7266.844256 C = 8319.545378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.008 4.008 3 C -0.166 4.166 4 C 0.120 3.880 5 N -0.503 5.503 6 C 0.137 3.863 7 C -0.195 4.195 8 C 0.563 3.437 9 O -0.574 6.574 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.114 4.114 13 C 0.081 3.919 14 H 0.059 0.941 15 O -0.393 6.393 16 C 0.050 3.950 17 C 0.145 3.855 18 N -0.606 5.606 19 C -0.264 4.264 20 H 0.074 0.926 21 C -0.038 4.038 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.266 1.266 25 H -0.295 1.295 26 H -0.284 1.284 27 C 0.136 3.864 28 H 0.003 0.997 29 C 0.139 3.861 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.041 0.959 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.171 0.829 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.049 0.951 42 H -0.007 1.007 43 H 0.080 0.920 44 H 0.252 0.748 45 H 0.078 0.922 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.011 18.806 -1.886 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.016 4.016 3 C -0.185 4.185 4 C -0.036 4.036 5 N -0.212 5.212 6 C -0.021 4.021 7 C -0.200 4.200 8 C 0.351 3.649 9 O -0.454 6.454 10 N -0.334 5.334 11 C -0.011 4.011 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.077 0.923 15 O -0.312 6.312 16 C -0.028 4.028 17 C 0.019 3.981 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.092 0.908 21 C -0.234 4.234 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.222 1.222 26 H -0.210 1.210 27 C 0.029 3.971 28 H 0.021 0.979 29 C 0.017 3.983 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.060 0.940 33 H 0.193 0.807 34 H 0.213 0.787 35 H 0.188 0.812 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.068 0.932 42 H 0.011 0.989 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.335 18.683 -1.588 23.009 hybrid contribution -2.007 -1.462 1.054 2.698 sum 11.327 17.221 -0.534 20.619 Atomic orbital electron populations 1.20881 0.89813 1.03133 1.03675 1.20591 0.97248 0.92052 0.91715 1.22341 0.95637 0.98715 1.01855 1.23588 0.92083 0.96995 0.90907 1.67813 1.40947 0.98667 1.13774 1.23069 0.89233 0.97529 0.92273 1.20725 0.96269 0.92903 1.10136 1.18636 0.81370 0.84005 0.80871 1.90790 1.35026 1.79965 1.39583 1.48254 1.46711 1.12474 1.25917 1.22067 0.92332 1.03321 0.83357 1.21849 1.01723 0.93035 0.98672 1.22491 0.94128 0.97011 0.84218 0.92304 1.87744 1.80692 1.27681 1.35112 1.23229 0.97637 0.81773 1.00139 1.21402 0.92536 1.00103 0.84047 1.44207 1.74492 1.08200 1.06273 1.19404 1.04315 1.16351 0.99276 0.90850 1.26036 0.95316 1.01939 1.00109 1.70070 1.15369 1.38167 1.33984 0.85282 0.77497 0.78017 0.80194 1.19044 1.22221 1.21037 1.21414 0.94296 0.86690 0.94714 0.97890 1.21356 0.97421 0.82100 0.97465 0.89966 0.87800 0.93972 0.80706 0.78656 0.81225 0.88183 0.87369 0.86785 0.91865 0.87485 0.93241 0.98858 0.90231 0.93839 0.90370 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.54 9.36 71.24 0.67 -1.88 16 2 C -0.01 -0.16 5.95 -19.40 -0.12 -0.28 16 3 C -0.17 -2.25 9.82 22.33 0.22 -2.03 16 4 C 0.12 1.59 11.17 84.69 0.95 2.54 16 5 N -0.50 -9.40 10.35 -194.75 -2.01 -11.41 16 6 C 0.14 2.80 8.99 85.04 0.76 3.56 16 7 C -0.20 -4.81 4.59 -19.99 -0.09 -4.90 16 8 C 0.56 18.43 6.17 86.78 0.54 18.97 16 9 O -0.57 -24.08 15.48 -3.90 -0.06 -24.14 16 10 N -0.60 -18.69 2.98 -822.09 -2.45 -21.14 16 11 C 0.11 2.43 5.53 86.44 0.48 2.91 16 12 C -0.11 -2.88 5.82 30.64 0.18 -2.70 16 13 C 0.08 2.81 2.48 30.66 0.08 2.88 16 14 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 15 O -0.39 -14.93 10.49 -148.98 -1.56 -16.49 16 16 C 0.05 1.93 6.96 72.05 0.50 2.43 16 17 C 0.14 7.13 5.39 86.28 0.46 7.60 16 18 N -0.61 -30.92 3.04 -673.94 -2.05 -32.97 16 19 C -0.26 -14.37 8.71 84.04 0.73 -13.64 16 20 H 0.07 3.86 6.43 -2.92 -0.02 3.85 16 21 C -0.04 -2.11 5.34 84.86 0.45 -1.66 16 22 N -0.93 -54.79 10.70 21.65 0.23 -54.55 16 23 Si 0.96 45.30 29.56 68.60 2.03 47.33 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 C 0.14 5.89 3.02 45.05 0.14 6.03 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 C 0.14 5.52 4.58 86.26 0.40 5.92 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.04 1.19 6.71 -2.38 -0.02 1.18 16 33 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.20 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.17 2.98 7.75 -2.91 -0.02 2.96 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.11 1.95 5.42 -2.39 -0.01 1.94 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.08 4.32 6.15 -2.38 -0.01 4.30 16 44 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.08 3.01 7.34 -2.39 -0.02 2.99 16 46 H 0.06 3.08 6.81 -2.39 -0.02 3.07 16 Total: -1.00 -74.15 360.22 1.45 -72.71 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.99 Total: 14.92 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: 6.34 Total: 25.75 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -6.28 Total: -120.08 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -1.62 Total: -40.63 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.15 1.45 -72.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200372.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.077 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds