Wall clock time and date at job start Tue Mar 31 2020 17:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38405 * 120.85178 * 2 1 4 4 C 1.38315 * 119.29826 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08443 * 359.97438 * 4 3 2 6 6 C 1.31661 * 121.87937 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56720 * 359.97438 * 6 5 4 8 8 C 1.47841 * 120.56059 * 179.74250 * 7 6 5 9 9 O 1.21552 * 119.99970 * 230.35759 * 8 7 6 10 10 N 1.34775 * 119.99891 * 50.35807 * 8 7 6 11 11 C 1.46844 * 120.41424 * 5.05049 * 10 8 7 12 12 C 1.53785 * 109.01937 * 127.71609 * 11 10 8 13 13 C 1.52790 * 108.74591 * 54.06739 * 12 11 10 14 14 H 1.09003 * 109.34430 * 57.02949 * 13 12 11 15 15 O 1.42609 * 111.11315 * 177.34241 * 13 12 11 16 16 C 1.43148 * 113.62996 * 183.61169 * 15 13 12 17 17 C 1.53196 * 109.74139 * 298.31308 * 16 15 13 18 18 N 1.47353 * 108.80162 * 51.20755 * 17 16 15 19 19 C 1.36937 * 121.30090 * 129.73916 * 18 17 16 20 20 H 1.08007 * 120.00213 * 208.44312 * 19 18 17 21 21 C 1.38812 * 120.00299 * 28.43861 * 19 18 17 22 22 N 1.31622 * 119.99689 * 10.95835 * 21 19 18 23 23 Si 1.86793 * 120.00250 * 190.95040 * 21 19 18 24 24 H 1.48502 * 109.46961 * 60.00408 * 23 21 19 25 25 H 1.48503 * 109.47471 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47561 * 300.00365 * 23 21 19 27 27 C 1.46870 * 117.39279 * 309.76306 * 18 17 16 28 28 H 1.08995 * 110.20608 * 292.02980 * 27 18 17 29 29 C 1.47138 * 120.41226 * 185.33116 * 10 8 7 30 30 H 1.08991 * 109.47132 * 272.15438 * 1 2 3 31 31 H 1.09006 * 109.46812 * 32.15421 * 1 2 3 32 32 H 1.08998 * 109.46962 * 152.14865 * 1 2 3 33 33 H 1.07993 * 120.35015 * 0.04455 * 3 2 1 34 34 H 1.08003 * 119.45362 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.71794 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.50616 * 247.70438 * 11 10 8 37 37 H 1.08997 * 109.50775 * 7.83616 * 11 10 8 38 38 H 1.08997 * 109.72286 * 294.22344 * 12 11 10 39 39 H 1.09005 * 109.51263 * 173.77893 * 12 11 10 40 40 H 1.08993 * 109.42580 * 58.39447 * 16 15 13 41 41 H 1.08992 * 109.42324 * 178.23554 * 16 15 13 42 42 H 1.08997 * 109.58326 * 171.00518 * 17 16 15 43 43 H 1.08999 * 109.58177 * 291.27947 * 17 16 15 44 44 H 0.96998 * 119.99858 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.72442 * 352.87462 * 29 10 8 46 46 H 1.08995 * 109.72408 * 113.54225 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1882 0.0000 4 6 3.5995 1.1507 -0.0005 5 7 4.2498 0.0026 -0.0005 6 6 3.6198 -1.1535 -0.0005 7 6 2.2250 -1.2016 0.0000 8 6 1.5177 -2.4999 -0.0057 9 8 0.6367 -2.7084 -0.8168 10 7 1.8497 -3.4521 0.8884 11 6 2.8337 -3.1721 1.9418 12 6 2.2291 -3.5475 3.3050 13 6 1.7457 -4.9956 3.2458 14 1 2.5779 -5.6431 2.9695 15 8 1.2295 -5.4169 4.5066 16 6 0.8360 -6.7929 4.5348 17 6 -0.2879 -7.0306 3.5212 18 7 0.1270 -6.4871 2.2159 19 6 0.0384 -7.2359 1.0728 20 1 0.7199 -7.0552 0.2546 21 6 -0.9272 -8.2274 0.9656 22 7 -1.8895 -8.3082 1.8600 23 14 -0.8610 -9.4466 -0.4480 24 1 0.4193 -10.1971 -0.3948 25 1 -1.9971 -10.3964 -0.3361 26 1 -0.9530 -8.7154 -1.7372 27 6 0.6397 -5.1110 2.1890 28 1 -0.1602 -4.4067 2.4170 29 6 1.2352 -4.7871 0.8175 30 1 -0.3633 0.0386 1.0268 31 1 -0.3633 0.8701 -0.5470 32 1 -0.3633 -0.9086 -0.4801 33 1 1.6966 2.1346 0.0007 34 1 4.1558 2.0764 -0.0001 35 1 4.1872 -2.0724 -0.0001 36 1 3.7338 -3.7609 1.7649 37 1 3.0844 -2.1113 1.9330 38 1 1.3885 -2.8905 3.5281 39 1 2.9890 -3.4475 4.0802 40 1 1.6909 -7.4197 4.2815 41 1 0.4831 -7.0487 5.5338 42 1 -0.4761 -8.1001 3.4285 43 1 -1.1949 -6.5278 3.8569 44 1 -2.5645 -9.0008 1.7848 45 1 0.4472 -4.7899 0.0643 46 1 1.9927 -5.5276 0.5611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074200373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:58 Heat of formation + Delta-G solvation = -6.902499 kcal Electronic energy + Delta-G solvation = -29691.758407 eV Core-core repulsion = 25775.461409 eV Total energy + Delta-G solvation = -3916.296997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03392 -39.62094 -38.42315 -36.19284 -34.74222 -34.03047 -32.42500 -31.44325 -31.19397 -29.80905 -28.18717 -27.07711 -25.61436 -24.16869 -23.90117 -22.59244 -21.94344 -21.40825 -19.79228 -19.28969 -17.61022 -16.93312 -16.70838 -16.56119 -16.00097 -15.44362 -15.32070 -14.98651 -14.58172 -14.42000 -14.36526 -13.97628 -13.75741 -13.67636 -13.11594 -13.07613 -12.92210 -12.88615 -12.80197 -12.65584 -12.35477 -11.98228 -11.90811 -11.36663 -11.01684 -10.98914 -10.88984 -10.63796 -10.29991 -10.25750 -10.19298 -10.02750 -9.70516 -9.64915 -9.52302 -9.28319 -9.00737 -8.57128 -8.45320 -6.74716 -5.85895 -3.34497 0.58637 0.95430 2.67544 3.00287 3.35159 3.40414 3.41229 3.52884 4.08935 4.22253 4.39761 4.40159 4.46638 4.51216 4.79985 4.82872 5.11562 5.15499 5.26179 5.30421 5.32569 5.36618 5.41709 5.48482 5.48583 5.63183 5.64855 5.71155 5.81901 5.89234 5.93220 6.07819 6.10714 6.14755 6.21678 6.30744 6.36209 6.43228 6.58071 6.63734 6.82493 7.11793 7.45881 7.51717 7.63405 7.67043 7.87249 8.19047 8.31131 9.07758 9.69971 10.27850 11.21643 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.003761 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.738641 B = 7442.568888 C = 8396.693846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.009 3.991 3 C -0.180 4.180 4 C 0.114 3.886 5 N -0.491 5.491 6 C 0.134 3.866 7 C -0.178 4.178 8 C 0.564 3.436 9 O -0.525 6.525 10 N -0.602 5.602 11 C 0.107 3.893 12 C -0.123 4.123 13 C 0.077 3.923 14 H 0.053 0.947 15 O -0.390 6.390 16 C 0.038 3.962 17 C 0.142 3.858 18 N -0.587 5.587 19 C -0.259 4.259 20 H 0.071 0.929 21 C 0.008 3.992 22 N -0.903 5.903 23 Si 0.906 3.094 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.138 3.862 28 H 0.037 0.963 29 C 0.123 3.877 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.027 0.973 44 H 0.256 0.744 45 H 0.104 0.896 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 15.918 1.175 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.001 3.999 3 C -0.200 4.200 4 C -0.042 4.042 5 N -0.199 5.199 6 C -0.024 4.024 7 C -0.183 4.183 8 C 0.350 3.650 9 O -0.402 6.402 10 N -0.335 5.335 11 C -0.016 4.016 12 C -0.161 4.161 13 C 0.017 3.983 14 H 0.071 0.929 15 O -0.309 6.309 16 C -0.039 4.039 17 C 0.017 3.983 18 N -0.312 5.312 19 C -0.388 4.388 20 H 0.089 0.911 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.735 3.265 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.206 1.206 27 C 0.030 3.970 28 H 0.054 0.946 29 C 0.002 3.998 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.178 0.822 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.123 0.877 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.481 15.771 0.883 18.956 hybrid contribution -0.951 -0.853 -0.763 1.488 sum 9.530 14.918 0.119 17.703 Atomic orbital electron populations 1.21137 0.89517 1.05434 1.03432 1.20397 0.97299 0.91354 0.90864 1.22027 0.95574 0.98576 1.03815 1.22913 0.91725 0.96405 0.93146 1.67714 1.40702 0.98237 1.13292 1.22999 0.90140 0.96674 0.92553 1.20914 0.95563 0.94494 1.07318 1.18069 0.82567 0.83020 0.81314 1.90781 1.30656 1.79846 1.38915 1.48236 1.42509 1.13419 1.29331 1.21946 0.91421 1.01577 0.86639 1.21904 1.01474 0.96452 0.96316 1.22437 0.96065 0.93954 0.85849 0.92933 1.87740 1.83293 1.27918 1.31949 1.23355 0.98646 0.81443 1.00484 1.21475 0.92268 1.01555 0.83022 1.43992 1.75473 1.07488 1.04243 1.19093 1.11522 1.13480 0.94739 0.91117 1.25120 0.94986 1.00912 0.98082 1.69961 1.13864 1.34599 1.36304 0.86323 0.77126 0.80899 0.82165 1.20887 1.21503 1.20633 1.21271 0.94167 0.89256 0.92287 0.94570 1.21846 0.98620 0.79918 0.99436 0.90221 0.90680 0.88339 0.84200 0.82376 0.82152 0.90762 0.89637 0.90868 0.90160 0.94129 0.90087 0.88301 0.95477 0.93375 0.87744 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.72 36.01 0.35 -1.19 16 2 C 0.01 0.11 5.95 -103.91 -0.62 -0.51 16 3 C -0.18 -1.59 9.81 -39.49 -0.39 -1.98 16 4 C 0.11 1.02 11.17 -17.47 -0.20 0.82 16 5 N -0.49 -5.44 10.35 -12.91 -0.13 -5.58 16 6 C 0.13 1.53 8.81 -17.13 -0.15 1.38 16 7 C -0.18 -2.29 4.75 -104.82 -0.50 -2.78 16 8 C 0.56 8.97 6.74 -12.33 -0.08 8.89 16 9 O -0.53 -10.25 14.35 5.32 0.08 -10.17 16 10 N -0.60 -9.27 2.98 -173.54 -0.52 -9.78 16 11 C 0.11 1.29 5.34 -3.45 -0.02 1.28 16 12 C -0.12 -1.68 5.84 -26.43 -0.15 -1.84 16 13 C 0.08 1.36 2.48 -26.63 -0.07 1.30 16 14 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 15 O -0.39 -7.58 10.49 -35.23 -0.37 -7.95 16 16 C 0.04 0.75 6.95 37.26 0.26 1.01 16 17 C 0.14 3.36 5.40 -3.47 -0.02 3.34 16 18 N -0.59 -14.36 3.04 -164.36 -0.50 -14.86 16 19 C -0.26 -6.82 8.87 -15.06 -0.13 -6.95 16 20 H 0.07 1.80 6.28 -52.48 -0.33 1.47 16 21 C 0.01 0.22 5.09 -17.43 -0.09 0.13 16 22 N -0.90 -25.58 10.96 55.49 0.61 -24.97 16 23 Si 0.91 21.33 29.57 -169.99 -5.03 16.31 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 27 C 0.14 2.87 3.03 -67.53 -0.20 2.67 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 29 C 0.12 2.33 4.50 -3.70 -0.02 2.31 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.10 1.40 5.63 -51.93 -0.29 1.11 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.16 1.58 7.45 -52.49 -0.39 1.19 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.90 5.21 -51.93 -0.27 0.63 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.10 2.54 6.15 -51.93 -0.32 2.22 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.10 2.29 6.80 -51.93 -0.35 1.94 16 46 H 0.08 1.42 7.37 -51.93 -0.38 1.03 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -31.68 358.19 -9.03 -40.71 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.54 Total: 3.02 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.02 Total: 7.87 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.54 Total: -55.18 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.29 Total: -18.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.68 -9.03 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.806 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds