Wall clock time and date at job start Tue Mar 31 2020 17:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38405 * 120.85178 * 2 1 4 4 C 1.38315 * 119.29826 * 180.02562 * 3 2 1 5 5 N 1.31953 * 121.08443 * 359.97438 * 4 3 2 6 6 C 1.31661 * 121.87937 * 0.02562 * 5 4 3 7 7 C 1.39565 * 120.56720 * 359.97438 * 6 5 4 8 8 C 1.47841 * 120.56059 * 179.74250 * 7 6 5 9 9 O 1.21552 * 119.99970 * 230.35759 * 8 7 6 10 10 N 1.34775 * 119.99891 * 50.35807 * 8 7 6 11 11 C 1.46844 * 120.41424 * 5.05049 * 10 8 7 12 12 C 1.53785 * 109.01937 * 127.71609 * 11 10 8 13 13 C 1.52790 * 108.74591 * 54.06739 * 12 11 10 14 14 H 1.09003 * 109.34430 * 57.02949 * 13 12 11 15 15 O 1.42609 * 111.11315 * 177.34241 * 13 12 11 16 16 C 1.43148 * 113.62996 * 183.61169 * 15 13 12 17 17 C 1.53196 * 109.74139 * 298.31308 * 16 15 13 18 18 N 1.47353 * 108.80162 * 51.20755 * 17 16 15 19 19 C 1.36937 * 121.30090 * 129.73916 * 18 17 16 20 20 H 1.08007 * 120.00213 * 208.44312 * 19 18 17 21 21 C 1.38812 * 120.00299 * 28.43861 * 19 18 17 22 22 N 1.31622 * 119.99689 * 10.95835 * 21 19 18 23 23 Si 1.86793 * 120.00250 * 190.95040 * 21 19 18 24 24 H 1.48502 * 109.46961 * 60.00408 * 23 21 19 25 25 H 1.48503 * 109.47471 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47561 * 300.00365 * 23 21 19 27 27 C 1.46870 * 117.39279 * 309.76306 * 18 17 16 28 28 H 1.08995 * 110.20608 * 292.02980 * 27 18 17 29 29 C 1.47138 * 120.41226 * 185.33116 * 10 8 7 30 30 H 1.08991 * 109.47132 * 272.15438 * 1 2 3 31 31 H 1.09006 * 109.46812 * 32.15421 * 1 2 3 32 32 H 1.08998 * 109.46962 * 152.14865 * 1 2 3 33 33 H 1.07993 * 120.35015 * 0.04455 * 3 2 1 34 34 H 1.08003 * 119.45362 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.71794 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.50616 * 247.70438 * 11 10 8 37 37 H 1.08997 * 109.50775 * 7.83616 * 11 10 8 38 38 H 1.08997 * 109.72286 * 294.22344 * 12 11 10 39 39 H 1.09005 * 109.51263 * 173.77893 * 12 11 10 40 40 H 1.08993 * 109.42580 * 58.39447 * 16 15 13 41 41 H 1.08992 * 109.42324 * 178.23554 * 16 15 13 42 42 H 1.08997 * 109.58326 * 171.00518 * 17 16 15 43 43 H 1.08999 * 109.58177 * 291.27947 * 17 16 15 44 44 H 0.96998 * 119.99858 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.72442 * 352.87462 * 29 10 8 46 46 H 1.08995 * 109.72408 * 113.54225 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1882 0.0000 4 6 3.5995 1.1507 -0.0005 5 7 4.2498 0.0026 -0.0005 6 6 3.6198 -1.1535 -0.0005 7 6 2.2250 -1.2016 0.0000 8 6 1.5177 -2.4999 -0.0057 9 8 0.6367 -2.7084 -0.8168 10 7 1.8497 -3.4521 0.8884 11 6 2.8337 -3.1721 1.9418 12 6 2.2291 -3.5475 3.3050 13 6 1.7457 -4.9956 3.2458 14 1 2.5779 -5.6431 2.9695 15 8 1.2295 -5.4169 4.5066 16 6 0.8360 -6.7929 4.5348 17 6 -0.2879 -7.0306 3.5212 18 7 0.1270 -6.4871 2.2159 19 6 0.0384 -7.2359 1.0728 20 1 0.7199 -7.0552 0.2546 21 6 -0.9272 -8.2274 0.9656 22 7 -1.8895 -8.3082 1.8600 23 14 -0.8610 -9.4466 -0.4480 24 1 0.4193 -10.1971 -0.3948 25 1 -1.9971 -10.3964 -0.3361 26 1 -0.9530 -8.7154 -1.7372 27 6 0.6397 -5.1110 2.1890 28 1 -0.1602 -4.4067 2.4170 29 6 1.2352 -4.7871 0.8175 30 1 -0.3633 0.0386 1.0268 31 1 -0.3633 0.8701 -0.5470 32 1 -0.3633 -0.9086 -0.4801 33 1 1.6966 2.1346 0.0007 34 1 4.1558 2.0764 -0.0001 35 1 4.1872 -2.0724 -0.0001 36 1 3.7338 -3.7609 1.7649 37 1 3.0844 -2.1113 1.9330 38 1 1.3885 -2.8905 3.5281 39 1 2.9890 -3.4475 4.0802 40 1 1.6909 -7.4197 4.2815 41 1 0.4831 -7.0487 5.5338 42 1 -0.4761 -8.1001 3.4285 43 1 -1.1949 -6.5278 3.8569 44 1 -2.5645 -9.0008 1.7848 45 1 0.4472 -4.7899 0.0643 46 1 1.9927 -5.5276 0.5611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074200373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:57 Heat of formation + Delta-G solvation = -28.247323 kcal Electronic energy + Delta-G solvation = -29692.683988 eV Core-core repulsion = 25775.461409 eV Total energy + Delta-G solvation = -3917.222578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08642 -40.86687 -39.77659 -37.56179 -36.56146 -34.88049 -33.80150 -33.11059 -32.35661 -31.29265 -29.22355 -28.71362 -26.99826 -25.66023 -25.05775 -23.81505 -23.14994 -22.80225 -21.48479 -20.49764 -18.82140 -18.66588 -17.67631 -17.45978 -17.28813 -17.06444 -16.87695 -16.41680 -16.07726 -15.73311 -15.44610 -15.27279 -15.12174 -14.96042 -14.69217 -14.66029 -14.10626 -13.98237 -13.83587 -13.69120 -13.49776 -13.33875 -12.99727 -12.86406 -12.83347 -12.68711 -12.45831 -12.33089 -12.10466 -11.94842 -11.79612 -11.29552 -11.27046 -10.75110 -10.55630 -10.54361 -10.43829 -10.12423 -9.79755 -8.74413 -7.92069 -5.43813 -0.25004 0.16382 1.44485 1.46279 1.48990 1.52526 1.78756 2.45089 2.70554 2.79780 3.22409 3.26137 3.40669 3.52216 3.63843 3.75560 3.80484 3.87813 3.99819 4.06805 4.15624 4.19572 4.35550 4.40476 4.43032 4.50186 4.53295 4.55096 4.60397 4.61788 4.70611 4.76820 4.83237 4.84942 4.95918 5.03906 5.10599 5.11503 5.25339 5.29577 5.37409 5.55020 5.59376 5.61959 6.23952 6.24249 6.33117 6.85503 6.96803 7.03633 7.70176 8.25758 9.13483 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.003761 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.738641 B = 7442.568888 C = 8396.693846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.005 4.005 3 C -0.168 4.168 4 C 0.121 3.879 5 N -0.503 5.503 6 C 0.137 3.863 7 C -0.197 4.197 8 C 0.562 3.438 9 O -0.573 6.573 10 N -0.601 5.601 11 C 0.109 3.891 12 C -0.114 4.114 13 C 0.081 3.919 14 H 0.061 0.939 15 O -0.393 6.393 16 C 0.051 3.949 17 C 0.146 3.854 18 N -0.605 5.605 19 C -0.263 4.263 20 H 0.076 0.924 21 C -0.046 4.046 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.293 1.293 26 H -0.281 1.281 27 C 0.136 3.864 28 H 0.003 0.997 29 C 0.139 3.861 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.174 0.826 34 H 0.197 0.803 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.108 0.892 42 H 0.074 0.926 43 H -0.006 1.006 44 H 0.251 0.749 45 H 0.064 0.936 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 18.394 1.607 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.013 4.013 3 C -0.188 4.188 4 C -0.035 4.035 5 N -0.212 5.212 6 C -0.021 4.021 7 C -0.202 4.202 8 C 0.351 3.649 9 O -0.453 6.453 10 N -0.333 5.333 11 C -0.013 4.013 12 C -0.153 4.153 13 C 0.022 3.978 14 H 0.078 0.922 15 O -0.312 6.312 16 C -0.026 4.026 17 C 0.021 3.979 18 N -0.330 5.330 19 C -0.392 4.392 20 H 0.094 0.906 21 C -0.242 4.242 22 N -0.582 5.582 23 Si 0.795 3.205 24 H -0.196 1.196 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.028 3.972 28 H 0.021 0.979 29 C 0.016 3.984 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.192 0.808 34 H 0.213 0.787 35 H 0.190 0.810 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.012 0.988 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.795 18.277 1.341 22.938 hybrid contribution -1.995 -1.472 -0.914 2.642 sum 11.801 16.805 0.426 20.539 Atomic orbital electron populations 1.21081 0.89972 1.04601 1.03632 1.20589 0.97316 0.92029 0.91384 1.22354 0.95671 0.98725 1.02006 1.23588 0.92063 0.97028 0.90784 1.67814 1.40930 0.98659 1.13844 1.23115 0.89248 0.97577 0.92124 1.20693 0.96244 0.92950 1.10352 1.18640 0.81897 0.83987 0.80352 1.90755 1.32926 1.80820 1.40832 1.48253 1.42812 1.11894 1.30304 1.22227 0.91013 1.03614 0.84422 1.21926 1.02069 0.92971 0.98320 1.22510 0.94494 0.96875 0.83928 0.92150 1.87748 1.83195 1.27697 1.32595 1.23194 0.97176 0.81902 1.00345 1.21328 0.92959 0.99549 0.84085 1.44281 1.75553 1.08995 1.04156 1.19435 1.11169 1.13241 0.95383 0.90621 1.25873 0.94927 1.02878 1.00488 1.70132 1.14696 1.35282 1.38100 0.85343 0.77259 0.78682 0.79190 1.19576 1.21898 1.20723 1.21400 0.94369 0.86630 0.94777 0.97945 1.21365 0.97657 0.82271 0.97110 0.89824 0.88154 0.92174 0.80816 0.78662 0.81036 0.87996 0.87249 0.91880 0.86781 0.93089 0.87387 0.90742 0.98756 0.93949 0.91758 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.72 71.24 0.69 -2.29 16 2 C 0.00 -0.10 5.95 -19.40 -0.12 -0.22 16 3 C -0.17 -2.33 9.81 22.33 0.22 -2.11 16 4 C 0.12 1.62 11.17 84.69 0.95 2.57 16 5 N -0.50 -9.36 10.35 -194.75 -2.01 -11.37 16 6 C 0.14 2.78 8.81 85.04 0.75 3.53 16 7 C -0.20 -4.85 4.75 -19.99 -0.09 -4.95 16 8 C 0.56 18.33 6.74 86.79 0.59 18.92 16 9 O -0.57 -23.88 14.35 -3.88 -0.06 -23.94 16 10 N -0.60 -18.51 2.98 -821.24 -2.44 -20.96 16 11 C 0.11 2.35 5.34 86.58 0.46 2.81 16 12 C -0.11 -2.85 5.84 30.79 0.18 -2.67 16 13 C 0.08 2.80 2.48 30.66 0.08 2.87 16 14 H 0.06 2.03 8.13 -2.39 -0.02 2.01 16 15 O -0.39 -14.81 10.49 -148.98 -1.56 -16.37 16 16 C 0.05 1.97 6.95 72.05 0.50 2.47 16 17 C 0.15 7.19 5.40 86.28 0.47 7.66 16 18 N -0.60 -30.78 3.04 -673.91 -2.05 -32.83 16 19 C -0.26 -14.31 8.87 84.03 0.75 -13.57 16 20 H 0.08 3.96 6.28 -2.91 -0.02 3.95 16 21 C -0.05 -2.58 5.09 84.86 0.43 -2.14 16 22 N -0.94 -55.51 10.96 21.65 0.24 -55.28 16 23 Si 0.97 45.11 29.57 68.60 2.03 47.14 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 C 0.14 5.84 3.03 45.05 0.14 5.98 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 C 0.14 5.47 4.50 86.25 0.39 5.85 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.10 1.60 8.12 -2.38 -0.02 1.58 16 32 H 0.06 1.82 5.63 -2.39 -0.01 1.80 16 33 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.17 2.93 7.45 -2.91 -0.02 2.91 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 1.94 5.21 -2.39 -0.01 1.92 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.07 4.01 6.15 -2.39 -0.01 4.00 16 43 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.06 3.04 6.80 -2.39 -0.02 3.02 16 46 H 0.08 3.04 7.37 -2.39 -0.02 3.03 16 Total: -1.00 -74.40 358.19 1.50 -72.90 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.99 Total: 15.99 kcal Atomic # 6 Polarization: 18.34 SS G_CDS: 6.37 Total: 24.71 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -6.27 Total: -120.43 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.62 Total: -40.31 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -74.40 1.50 -72.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.654 kcal (2) G-P(sol) polarization free energy of solvation -74.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds