Wall clock time and date at job start Tue Mar 31 2020 17:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38393 * 120.85300 * 2 1 4 4 C 1.38317 * 119.30427 * 180.02562 * 3 2 1 5 5 N 1.31951 * 121.07772 * 359.97438 * 4 3 2 6 6 C 1.31668 * 121.88495 * 359.77125 * 5 4 3 7 7 C 1.39566 * 120.56023 * 0.49200 * 6 5 4 8 8 C 1.47839 * 120.55735 * 179.77285 * 7 6 5 9 9 O 1.21552 * 119.99950 * 130.87286 * 8 7 6 10 10 N 1.34779 * 120.00067 * 310.86877 * 8 7 6 11 11 C 1.46977 * 120.72217 * 354.67183 * 10 8 7 12 12 C 1.51068 * 108.67761 * 233.96786 * 11 10 8 13 13 C 1.52505 * 110.92944 * 306.36740 * 12 11 10 14 14 H 1.09000 * 108.40173 * 178.24075 * 13 12 11 15 15 O 1.42684 * 110.62835 * 297.61588 * 13 12 11 16 16 C 1.43079 * 113.87175 * 185.34992 * 15 13 12 17 17 C 1.53232 * 109.44582 * 298.34804 * 16 15 13 18 18 N 1.47177 * 108.69264 * 51.59119 * 17 16 15 19 19 C 1.36934 * 121.22327 * 129.03071 * 18 17 16 20 20 H 1.07997 * 120.00113 * 208.72625 * 19 18 17 21 21 C 1.38821 * 120.00039 * 28.72069 * 19 18 17 22 22 N 1.31618 * 119.99817 * 10.55913 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 190.55773 * 21 19 18 24 24 H 1.48501 * 109.46896 * 90.00029 * 23 21 19 25 25 H 1.48500 * 109.47180 * 210.00075 * 23 21 19 26 26 H 1.48500 * 109.46952 * 330.00132 * 23 21 19 27 27 C 1.47584 * 117.55070 * 309.04928 * 18 17 16 28 28 H 1.09002 * 110.31563 * 172.29575 * 27 18 17 29 29 C 1.46795 * 120.72326 * 174.65703 * 10 8 7 30 30 H 1.09001 * 109.46993 * 273.56445 * 1 2 3 31 31 H 1.08998 * 109.46925 * 33.56642 * 1 2 3 32 32 H 1.09006 * 109.46548 * 153.56635 * 1 2 3 33 33 H 1.08004 * 120.35127 * 0.04796 * 3 2 1 34 34 H 1.07999 * 119.45578 * 180.02562 * 4 3 2 35 35 H 1.07993 * 119.72424 * 180.26593 * 6 5 4 36 36 H 1.09002 * 109.64527 * 354.21473 * 11 10 8 37 37 H 1.09005 * 109.63780 * 114.83849 * 11 10 8 38 38 H 1.09002 * 109.71184 * 185.36837 * 12 11 10 39 39 H 1.08992 * 107.97850 * 66.25750 * 12 11 10 40 40 H 1.09000 * 109.47641 * 58.33810 * 16 15 13 41 41 H 1.09005 * 109.47682 * 178.35475 * 16 15 13 42 42 H 1.09002 * 109.59826 * 291.82754 * 17 16 15 43 43 H 1.09003 * 109.59775 * 171.34920 * 17 16 15 44 44 H 0.96998 * 119.99739 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.52120 * 5.81073 * 29 10 8 46 46 H 1.09002 * 109.51893 * 245.63038 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5995 1.1507 -0.0005 5 7 4.2498 0.0026 -0.0005 6 6 3.6198 -1.1536 0.0044 7 6 2.2250 -1.2017 -0.0004 8 6 1.5177 -2.4999 0.0001 9 8 0.6192 -2.7022 0.7934 10 7 1.8691 -3.4591 -0.8791 11 6 2.8715 -3.1926 -1.9203 12 6 2.2775 -3.5422 -3.2646 13 6 1.7368 -4.9682 -3.2670 14 1 1.2915 -5.1657 -4.2421 15 8 2.7888 -5.9051 -3.0403 16 6 2.3802 -7.2720 -3.1486 17 6 1.3144 -7.5713 -2.0891 18 7 0.2536 -6.5559 -2.1872 19 6 -1.0653 -6.9134 -2.2757 20 1 -1.7653 -6.2722 -2.7906 21 6 -1.5025 -8.1003 -1.7035 22 7 -0.7067 -8.7775 -0.9034 23 14 -3.2205 -8.7361 -2.0693 24 1 -3.1782 -9.6171 -3.2641 25 1 -3.7217 -9.5071 -0.9033 26 1 -4.1272 -7.5897 -2.3315 27 6 0.6636 -5.1381 -2.1872 28 1 -0.1917 -4.4968 -2.4000 29 6 1.2591 -4.7929 -0.8173 30 1 -0.3633 0.0639 1.0257 31 1 -0.3633 0.8563 -0.5682 32 1 -0.3632 -0.9203 -0.4575 33 1 1.6966 2.1346 0.0008 34 1 4.1558 2.0764 -0.0001 35 1 4.1871 -2.0725 0.0086 36 1 3.1508 -2.1391 -1.8991 37 1 3.7521 -3.8117 -1.7482 38 1 3.0372 -3.4415 -4.0397 39 1 1.4633 -2.8456 -3.4640 40 1 1.9661 -7.4499 -4.1410 41 1 3.2410 -7.9221 -2.9920 42 1 1.7647 -7.5351 -1.0971 43 1 0.8913 -8.5603 -2.2654 44 1 -1.0123 -9.6066 -0.5033 45 1 0.4701 -4.7982 -0.0653 46 1 2.0189 -5.5290 -0.5544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074200374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:02 Heat of formation + Delta-G solvation = -7.838112 kcal Electronic energy + Delta-G solvation = -29812.665582 eV Core-core repulsion = 25896.328013 eV Total energy + Delta-G solvation = -3916.337569 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97509 -39.65775 -38.36233 -35.92958 -34.67133 -34.00478 -32.32142 -31.60933 -31.19267 -29.54300 -28.19122 -27.35261 -25.49092 -24.00430 -23.75983 -22.87768 -22.23888 -21.48539 -19.80710 -18.40812 -17.51762 -16.92619 -16.74966 -16.51119 -15.92495 -15.47196 -15.24518 -15.02563 -14.58886 -14.49385 -14.37412 -13.94024 -13.73684 -13.62200 -13.24756 -13.01490 -12.87737 -12.84354 -12.57127 -12.41145 -12.36071 -12.06201 -11.87603 -11.31972 -11.07682 -10.98344 -10.80972 -10.62254 -10.27378 -10.24889 -10.14785 -10.00815 -9.69220 -9.66851 -9.47919 -9.21403 -9.00429 -8.64106 -8.31675 -6.76273 -5.88164 -3.37165 0.63608 0.99226 2.79108 3.13138 3.32637 3.39343 3.40652 3.58938 4.16094 4.29176 4.38097 4.45407 4.49168 4.57072 4.83783 4.92679 5.13079 5.20192 5.26833 5.31157 5.31463 5.41337 5.45455 5.50530 5.61167 5.67346 5.73746 5.76261 5.91013 5.95923 6.01671 6.05940 6.12128 6.13703 6.28062 6.33126 6.39969 6.41470 6.60662 6.70209 6.88965 7.08562 7.49544 7.62208 7.67383 7.68473 7.87111 8.27963 8.33112 9.06845 9.66556 10.24713 11.18596 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.003649 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.160820 B = 7671.568585 C = 8628.961734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.006 3.994 3 C -0.181 4.181 4 C 0.113 3.887 5 N -0.491 5.491 6 C 0.135 3.865 7 C -0.175 4.175 8 C 0.558 3.442 9 O -0.530 6.530 10 N -0.597 5.597 11 C 0.108 3.892 12 C -0.123 4.123 13 C 0.082 3.918 14 H 0.052 0.948 15 O -0.387 6.387 16 C 0.038 3.962 17 C 0.137 3.863 18 N -0.583 5.583 19 C -0.255 4.255 20 H 0.068 0.932 21 C 0.007 3.993 22 N -0.902 5.902 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.135 3.865 28 H 0.073 0.927 29 C 0.105 3.895 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.099 0.901 44 H 0.256 0.744 45 H 0.091 0.909 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 16.552 -2.647 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.002 4.002 3 C -0.201 4.201 4 C -0.043 4.043 5 N -0.200 5.200 6 C -0.023 4.023 7 C -0.181 4.181 8 C 0.345 3.655 9 O -0.407 6.407 10 N -0.330 5.330 11 C -0.015 4.015 12 C -0.162 4.162 13 C 0.023 3.977 14 H 0.070 0.930 15 O -0.307 6.307 16 C -0.039 4.039 17 C 0.012 3.988 18 N -0.306 5.306 19 C -0.385 4.385 20 H 0.086 0.914 21 C -0.192 4.192 22 N -0.546 5.546 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.203 1.203 27 C 0.026 3.974 28 H 0.091 0.909 29 C -0.018 4.018 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.117 0.883 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.045 16.287 -2.098 18.748 hybrid contribution -1.954 -0.556 -0.153 2.038 sum 7.090 15.731 -2.251 17.402 Atomic orbital electron populations 1.20907 0.89425 1.03625 1.03679 1.20404 0.97234 0.91429 0.91182 1.22001 0.95578 0.98512 1.03983 1.22904 0.91710 0.96402 0.93300 1.67717 1.40731 0.98242 1.13280 1.23033 0.90251 0.96638 0.92364 1.20995 0.95562 0.94569 1.06943 1.18073 0.82970 0.83125 0.81351 1.90807 1.29930 1.80400 1.39559 1.48243 1.41167 1.13056 1.30485 1.21424 0.91727 1.00993 0.87338 1.21420 1.01558 0.95816 0.97366 1.22194 0.88955 0.88108 0.98482 0.92964 1.87714 1.34473 1.15850 1.92635 1.23362 0.98939 0.81727 0.99901 1.21515 0.87400 0.95543 0.94355 1.44252 1.03061 0.97917 1.85342 1.19181 0.84583 1.05666 1.29041 0.91400 1.25156 0.97917 0.99613 0.96499 1.69954 1.35982 1.17010 1.31652 0.86194 0.83878 0.78757 0.77346 1.21341 1.21550 1.20342 1.21567 0.95025 0.88777 0.91990 0.90880 1.22360 0.98383 0.80089 1.00947 0.89618 0.90997 0.90329 0.84260 0.82428 0.82114 0.90280 0.90432 0.90189 0.90758 0.94135 0.90117 0.95361 0.88268 0.93367 0.89089 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.24 36.01 0.33 -0.99 16 2 C 0.01 0.07 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.64 9.82 -39.49 -0.39 -2.03 16 4 C 0.11 1.04 11.17 -17.47 -0.20 0.85 16 5 N -0.49 -5.70 10.35 -12.91 -0.13 -5.83 16 6 C 0.14 1.64 8.74 -17.13 -0.15 1.49 16 7 C -0.18 -2.35 4.83 -104.82 -0.51 -2.86 16 8 C 0.56 9.27 6.38 -12.33 -0.08 9.19 16 9 O -0.53 -10.71 15.14 5.32 0.08 -10.63 16 10 N -0.60 -9.67 2.96 -175.14 -0.52 -10.19 16 11 C 0.11 1.41 5.13 -4.75 -0.02 1.39 16 12 C -0.12 -1.64 5.67 -27.96 -0.16 -1.80 16 13 C 0.08 1.42 2.72 -26.89 -0.07 1.35 16 14 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 15 O -0.39 -7.04 9.72 -35.23 -0.34 -7.38 16 16 C 0.04 0.72 6.98 37.28 0.26 0.98 16 17 C 0.14 3.14 4.93 -3.55 -0.02 3.12 16 18 N -0.58 -14.03 2.73 -163.87 -0.45 -14.47 16 19 C -0.26 -6.79 9.70 -15.06 -0.15 -6.93 16 20 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 21 C 0.01 0.20 5.09 -17.43 -0.09 0.11 16 22 N -0.90 -25.30 10.94 55.49 0.61 -24.70 16 23 Si 0.91 21.31 29.57 -169.99 -5.03 16.28 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.14 2.75 2.97 -67.08 -0.20 2.55 16 28 H 0.07 1.53 7.99 -51.93 -0.42 1.12 16 29 C 0.11 2.10 5.68 -3.72 -0.02 2.08 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.08 1.06 6.64 -51.93 -0.35 0.71 16 33 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.16 1.78 7.39 -52.49 -0.39 1.39 16 36 H 0.08 0.90 5.12 -51.93 -0.27 0.63 16 37 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.03 0.69 7.26 -51.93 -0.38 0.31 16 43 H 0.10 2.52 6.11 -51.93 -0.32 2.20 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.09 2.10 6.99 -51.93 -0.36 1.74 16 46 H 0.07 1.50 6.72 -51.93 -0.35 1.15 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -31.05 359.18 -9.03 -40.08 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.59 Total: 3.50 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.07 Total: 7.95 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.49 Total: -55.20 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.26 Total: -18.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.05 -9.03 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.237 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds