Wall clock time and date at job start Tue Mar 31 2020 17:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38393 * 120.85300 * 2 1 4 4 C 1.38317 * 119.30427 * 180.02562 * 3 2 1 5 5 N 1.31951 * 121.07772 * 359.97438 * 4 3 2 6 6 C 1.31668 * 121.88495 * 359.77125 * 5 4 3 7 7 C 1.39566 * 120.56023 * 0.49200 * 6 5 4 8 8 C 1.47839 * 120.55735 * 179.77285 * 7 6 5 9 9 O 1.21552 * 119.99950 * 130.87286 * 8 7 6 10 10 N 1.34779 * 120.00067 * 310.86877 * 8 7 6 11 11 C 1.46977 * 120.72217 * 354.67183 * 10 8 7 12 12 C 1.51068 * 108.67761 * 233.96786 * 11 10 8 13 13 C 1.52505 * 110.92944 * 306.36740 * 12 11 10 14 14 H 1.09000 * 108.40173 * 178.24075 * 13 12 11 15 15 O 1.42684 * 110.62835 * 297.61588 * 13 12 11 16 16 C 1.43079 * 113.87175 * 185.34992 * 15 13 12 17 17 C 1.53232 * 109.44582 * 298.34804 * 16 15 13 18 18 N 1.47177 * 108.69264 * 51.59119 * 17 16 15 19 19 C 1.36934 * 121.22327 * 129.03071 * 18 17 16 20 20 H 1.07997 * 120.00113 * 208.72625 * 19 18 17 21 21 C 1.38821 * 120.00039 * 28.72069 * 19 18 17 22 22 N 1.31618 * 119.99817 * 10.55913 * 21 19 18 23 23 Si 1.86799 * 119.99968 * 190.55773 * 21 19 18 24 24 H 1.48501 * 109.46896 * 90.00029 * 23 21 19 25 25 H 1.48500 * 109.47180 * 210.00075 * 23 21 19 26 26 H 1.48500 * 109.46952 * 330.00132 * 23 21 19 27 27 C 1.47584 * 117.55070 * 309.04928 * 18 17 16 28 28 H 1.09002 * 110.31563 * 172.29575 * 27 18 17 29 29 C 1.46795 * 120.72326 * 174.65703 * 10 8 7 30 30 H 1.09001 * 109.46993 * 273.56445 * 1 2 3 31 31 H 1.08998 * 109.46925 * 33.56642 * 1 2 3 32 32 H 1.09006 * 109.46548 * 153.56635 * 1 2 3 33 33 H 1.08004 * 120.35127 * 0.04796 * 3 2 1 34 34 H 1.07999 * 119.45578 * 180.02562 * 4 3 2 35 35 H 1.07993 * 119.72424 * 180.26593 * 6 5 4 36 36 H 1.09002 * 109.64527 * 354.21473 * 11 10 8 37 37 H 1.09005 * 109.63780 * 114.83849 * 11 10 8 38 38 H 1.09002 * 109.71184 * 185.36837 * 12 11 10 39 39 H 1.08992 * 107.97850 * 66.25750 * 12 11 10 40 40 H 1.09000 * 109.47641 * 58.33810 * 16 15 13 41 41 H 1.09005 * 109.47682 * 178.35475 * 16 15 13 42 42 H 1.09002 * 109.59826 * 291.82754 * 17 16 15 43 43 H 1.09003 * 109.59775 * 171.34920 * 17 16 15 44 44 H 0.96998 * 119.99739 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.52120 * 5.81073 * 29 10 8 46 46 H 1.09002 * 109.51893 * 245.63038 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5995 1.1507 -0.0005 5 7 4.2498 0.0026 -0.0005 6 6 3.6198 -1.1536 0.0044 7 6 2.2250 -1.2017 -0.0004 8 6 1.5177 -2.4999 0.0001 9 8 0.6192 -2.7022 0.7934 10 7 1.8691 -3.4591 -0.8791 11 6 2.8715 -3.1926 -1.9203 12 6 2.2775 -3.5422 -3.2646 13 6 1.7368 -4.9682 -3.2670 14 1 1.2915 -5.1657 -4.2421 15 8 2.7888 -5.9051 -3.0403 16 6 2.3802 -7.2720 -3.1486 17 6 1.3144 -7.5713 -2.0891 18 7 0.2536 -6.5559 -2.1872 19 6 -1.0653 -6.9134 -2.2757 20 1 -1.7653 -6.2722 -2.7906 21 6 -1.5025 -8.1003 -1.7035 22 7 -0.7067 -8.7775 -0.9034 23 14 -3.2205 -8.7361 -2.0693 24 1 -3.1782 -9.6171 -3.2641 25 1 -3.7217 -9.5071 -0.9033 26 1 -4.1272 -7.5897 -2.3315 27 6 0.6636 -5.1381 -2.1872 28 1 -0.1917 -4.4968 -2.4000 29 6 1.2591 -4.7929 -0.8173 30 1 -0.3633 0.0639 1.0257 31 1 -0.3633 0.8563 -0.5682 32 1 -0.3632 -0.9203 -0.4575 33 1 1.6966 2.1346 0.0008 34 1 4.1558 2.0764 -0.0001 35 1 4.1871 -2.0725 0.0086 36 1 3.1508 -2.1391 -1.8991 37 1 3.7521 -3.8117 -1.7482 38 1 3.0372 -3.4415 -4.0397 39 1 1.4633 -2.8456 -3.4640 40 1 1.9661 -7.4499 -4.1410 41 1 3.2410 -7.9221 -2.9920 42 1 1.7647 -7.5351 -1.0971 43 1 0.8913 -8.5603 -2.2654 44 1 -1.0123 -9.6066 -0.5033 45 1 0.4701 -4.7982 -0.0653 46 1 2.0189 -5.5290 -0.5544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074200374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:01 Heat of formation + Delta-G solvation = -28.214907 kcal Electronic energy + Delta-G solvation = -29813.549186 eV Core-core repulsion = 25896.328013 eV Total energy + Delta-G solvation = -3917.221173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08618 -40.92360 -39.71781 -37.33664 -36.46104 -34.88867 -33.74025 -33.22564 -32.40706 -31.04362 -29.39812 -28.83018 -26.77690 -25.67604 -24.92159 -24.38970 -23.21331 -22.93661 -21.17848 -19.85868 -18.97860 -18.58576 -17.74410 -17.35453 -17.20570 -17.10150 -16.92492 -16.44188 -16.17003 -15.72367 -15.52993 -15.24267 -15.01423 -14.88610 -14.80380 -14.38195 -13.99659 -13.95468 -13.79814 -13.70249 -13.59972 -13.43927 -13.02331 -12.89260 -12.77804 -12.63918 -12.44903 -12.24530 -12.11833 -11.89762 -11.76221 -11.28605 -11.24022 -10.75552 -10.57275 -10.56163 -10.43313 -10.12034 -9.77407 -8.70279 -7.93210 -5.45643 -0.24571 0.16448 1.42887 1.44302 1.53069 1.55265 1.85025 2.44088 2.72485 2.86621 3.22120 3.25383 3.42887 3.51712 3.64652 3.76609 3.84031 3.91391 4.04181 4.09784 4.15751 4.24433 4.38057 4.43072 4.47053 4.51789 4.55395 4.60068 4.64136 4.71638 4.76127 4.82816 4.84920 4.87307 4.93168 5.01191 5.09973 5.18799 5.26374 5.27884 5.40586 5.55140 5.60841 5.62484 6.25769 6.32184 6.35483 6.86062 7.00025 7.04444 7.68897 8.23929 9.10709 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.003649 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.160820 B = 7671.568585 C = 8628.961734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.005 4.005 3 C -0.166 4.166 4 C 0.120 3.880 5 N -0.504 5.504 6 C 0.135 3.865 7 C -0.196 4.196 8 C 0.558 3.442 9 O -0.578 6.578 10 N -0.595 5.595 11 C 0.109 3.891 12 C -0.116 4.116 13 C 0.088 3.912 14 H 0.052 0.948 15 O -0.382 6.382 16 C 0.051 3.949 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.267 4.267 20 H 0.066 0.934 21 C -0.043 4.043 22 N -0.932 5.932 23 Si 0.971 3.029 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.272 1.272 27 C 0.133 3.867 28 H 0.060 0.940 29 C 0.125 3.875 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.177 0.823 34 H 0.197 0.803 35 H 0.165 0.835 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.252 0.748 45 H 0.047 0.953 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 19.897 -4.343 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.014 4.014 3 C -0.185 4.185 4 C -0.036 4.036 5 N -0.213 5.213 6 C -0.023 4.023 7 C -0.201 4.201 8 C 0.347 3.653 9 O -0.459 6.459 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.154 4.154 13 C 0.028 3.972 14 H 0.070 0.930 15 O -0.301 6.301 16 C -0.027 4.027 17 C 0.019 3.981 18 N -0.325 5.325 19 C -0.397 4.397 20 H 0.084 0.916 21 C -0.239 4.239 22 N -0.577 5.577 23 Si 0.799 3.201 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.197 1.197 27 C 0.025 3.975 28 H 0.079 0.921 29 C 0.000 4.000 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.064 0.936 33 H 0.195 0.805 34 H 0.214 0.786 35 H 0.182 0.818 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.020 0.980 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.740 19.669 -3.831 22.736 hybrid contribution -2.453 -1.455 0.428 2.884 sum 8.287 18.215 -3.403 20.298 Atomic orbital electron populations 1.20876 0.89555 1.03329 1.03562 1.20616 0.97427 0.91891 0.91434 1.22360 0.95574 0.98758 1.01855 1.23609 0.92181 0.96924 0.90852 1.67805 1.41016 0.98652 1.13861 1.23040 0.89456 0.97403 0.92361 1.20739 0.96111 0.93079 1.10160 1.18651 0.82280 0.84148 0.80211 1.90772 1.32287 1.81433 1.41389 1.48222 1.41523 1.11481 1.31490 1.21648 0.90752 1.02765 0.86041 1.21451 1.02833 0.92785 0.98356 1.22204 0.88028 0.90337 0.96622 0.93015 1.87732 1.34381 1.15498 1.92493 1.23193 0.98523 0.82678 0.98257 1.21334 0.88034 0.94157 0.94548 1.44464 1.02671 0.99694 1.85636 1.19460 0.85887 1.05729 1.28602 0.91639 1.25881 1.01374 1.00007 0.96671 1.70120 1.37518 1.17194 1.32854 0.85217 0.79836 0.78129 0.76934 1.20530 1.22126 1.19679 1.21690 0.95861 0.86629 0.93312 0.92141 1.21768 0.96707 0.82079 0.99447 0.90180 0.87728 0.93611 0.80529 0.78577 0.81768 0.87618 0.89900 0.86799 0.89691 0.93609 0.87323 0.98020 0.91113 0.93864 0.93467 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.24 71.24 0.66 -1.83 16 2 C -0.01 -0.11 5.95 -19.40 -0.12 -0.23 16 3 C -0.17 -2.29 9.82 22.33 0.22 -2.08 16 4 C 0.12 1.67 11.17 84.69 0.95 2.62 16 5 N -0.50 -10.05 10.35 -194.75 -2.01 -12.07 16 6 C 0.14 3.02 8.74 85.04 0.74 3.76 16 7 C -0.20 -5.07 4.83 -19.99 -0.10 -5.17 16 8 C 0.56 19.17 6.38 86.78 0.55 19.73 16 9 O -0.58 -25.04 15.14 -3.88 -0.06 -25.10 16 10 N -0.60 -19.73 2.96 -826.30 -2.45 -22.18 16 11 C 0.11 2.66 5.13 85.66 0.44 3.10 16 12 C -0.12 -2.79 5.67 29.80 0.17 -2.62 16 13 C 0.09 2.93 2.72 30.49 0.08 3.02 16 14 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 15 O -0.38 -13.36 9.72 -148.98 -1.45 -14.80 16 16 C 0.05 1.90 6.98 72.06 0.50 2.40 16 17 C 0.14 6.91 4.93 86.33 0.43 7.33 16 18 N -0.60 -30.23 2.73 -672.36 -1.84 -32.07 16 19 C -0.27 -14.76 9.70 84.04 0.82 -13.95 16 20 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 21 C -0.04 -2.42 5.09 84.86 0.43 -1.99 16 22 N -0.93 -54.78 10.94 21.65 0.24 -54.55 16 23 Si 0.97 45.09 29.57 68.60 2.03 47.12 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.13 5.61 2.97 44.95 0.13 5.74 16 28 H 0.06 2.66 7.99 -2.39 -0.02 2.64 16 29 C 0.12 5.28 5.68 86.43 0.49 5.77 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.10 1.46 8.12 -2.39 -0.02 1.44 16 32 H 0.04 1.27 6.64 -2.38 -0.02 1.25 16 33 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 34 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.17 3.40 7.39 -2.91 -0.02 3.38 16 36 H 0.11 2.10 5.12 -2.39 -0.01 2.08 16 37 H 0.08 1.98 8.00 -2.38 -0.02 1.96 16 38 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 42 H 0.00 0.09 7.26 -2.39 -0.02 0.07 16 43 H 0.07 3.78 6.11 -2.39 -0.01 3.76 16 44 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 45 H 0.05 2.38 6.99 -2.39 -0.02 2.37 16 46 H 0.05 2.48 6.72 -2.39 -0.02 2.46 16 Total: -1.00 -72.99 359.18 1.85 -71.14 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.99 Total: 16.88 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: 6.40 Total: 25.62 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -6.06 Total: -120.86 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.51 Total: -39.90 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.99 1.85 -71.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.923 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds