Wall clock time and date at job start Tue Mar 31 2020 16:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 120.34944 * 2 1 4 4 N 1.31931 * 121.08142 * 180.02562 * 3 2 1 5 5 C 1.31691 * 121.87955 * 359.67055 * 4 3 2 6 6 C 1.39525 * 120.56257 * 0.59042 * 5 4 3 7 7 C 1.47842 * 120.55580 * 179.73115 * 6 5 4 8 8 O 1.21552 * 120.00260 * 152.08900 * 7 6 5 9 9 N 1.34777 * 119.99885 * 332.07855 * 7 6 5 10 10 C 1.46841 * 120.40838 * 353.98823 * 9 7 6 11 11 C 1.53368 * 109.25092 * 232.21333 * 10 9 7 12 12 C 1.52788 * 108.81198 * 306.17140 * 11 10 9 13 13 H 1.09004 * 109.34011 * 303.34350 * 12 11 10 14 14 O 1.42599 * 111.11870 * 182.55677 * 12 11 10 15 15 C 1.43147 * 113.63395 * 176.38917 * 14 12 11 16 16 C 1.53186 * 109.69746 * 61.71314 * 15 14 12 17 17 N 1.47331 * 108.81037 * 308.70266 * 16 15 14 18 18 C 1.36940 * 121.34447 * 230.30259 * 17 16 15 19 19 H 1.08005 * 119.99678 * 150.50073 * 18 17 16 20 20 C 1.38809 * 119.99908 * 330.50425 * 18 17 16 21 21 N 1.31617 * 120.00519 * 345.51227 * 20 18 17 22 22 Si 1.86801 * 119.99917 * 165.51568 * 20 18 17 23 23 H 1.48499 * 109.47248 * 59.99462 * 22 20 18 24 24 H 1.48503 * 109.47328 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47025 * 299.99740 * 22 20 18 26 26 C 1.46869 * 117.35323 * 50.33077 * 17 16 15 27 27 H 1.08998 * 110.22094 * 67.95706 * 26 17 16 28 28 C 1.47130 * 120.40671 * 173.96373 * 9 7 6 29 29 C 1.38362 * 120.34988 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46984 * 269.97818 * 1 2 3 31 31 H 1.08994 * 109.47264 * 29.98382 * 1 2 3 32 32 H 1.09009 * 109.47158 * 149.98563 * 1 2 3 33 33 H 1.08005 * 119.45852 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.71774 * 180.29212 * 5 4 3 35 35 H 1.08998 * 109.50636 * 112.27763 * 10 9 7 36 36 H 1.08998 * 109.54124 * 352.17202 * 10 9 7 37 37 H 1.08996 * 109.57843 * 186.37157 * 11 10 9 38 38 H 1.09002 * 109.57898 * 65.96479 * 11 10 9 39 39 H 1.09001 * 109.42500 * 181.77180 * 15 14 12 40 40 H 1.09005 * 109.42535 * 301.65511 * 15 14 12 41 41 H 1.09000 * 109.58101 * 68.55178 * 16 15 14 42 42 H 1.08997 * 109.58885 * 188.96088 * 16 15 14 43 43 H 0.96997 * 120.00657 * 180.02562 * 21 20 18 44 44 H 1.09008 * 109.72931 * 246.46900 * 28 9 7 45 45 H 1.09006 * 109.72806 * 7.08847 * 28 9 7 46 46 H 1.08003 * 120.85317 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1015 0.0054 6 6 3.6053 -1.1436 0.0001 7 6 4.4023 -2.3889 0.0008 8 8 3.9444 -3.4033 0.4894 9 7 5.6365 -2.3993 -0.5407 10 6 6.1472 -1.2190 -1.2495 11 6 6.6506 -1.6402 -2.6356 12 6 7.6580 -2.7768 -2.4696 13 1 8.4644 -2.4513 -1.8123 14 8 8.2031 -3.1682 -3.7278 15 6 9.2150 -4.1755 -3.6265 16 6 8.6186 -5.4468 -3.0144 17 7 7.9144 -5.0900 -1.7705 18 6 8.1464 -5.7650 -0.6018 19 1 8.0342 -5.2587 0.3456 20 6 8.5258 -7.0998 -0.6349 21 7 8.3900 -7.7954 -1.7439 22 14 9.2293 -7.9090 0.8948 23 1 8.2301 -7.8471 1.9916 24 1 9.5527 -9.3281 0.5999 25 1 10.4638 -7.1953 1.3090 26 6 6.9528 -3.9816 -1.8335 27 1 6.0915 -4.2640 -2.4389 28 6 6.4889 -3.5932 -0.4283 29 6 2.2061 -1.1940 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3634 -0.8899 -0.5141 33 1 1.6628 2.1274 0.0004 34 1 5.3135 0.1560 0.0095 35 1 6.9679 -0.7804 -0.6819 36 1 5.3482 -0.4858 -1.3596 37 1 7.1331 -0.7925 -3.1221 38 1 5.8109 -1.9818 -3.2409 39 1 9.6044 -4.3994 -4.6196 40 1 10.0248 -3.8135 -2.9928 41 1 7.9162 -5.8956 -3.7168 42 1 9.4171 -6.1543 -2.7910 43 1 8.6548 -8.7283 -1.7670 44 1 7.3540 -3.3703 0.1963 45 1 5.9192 -4.4120 0.0112 46 1 1.6858 -2.1405 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074200744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:15 Heat of formation + Delta-G solvation = 5.921357 kcal Electronic energy + Delta-G solvation = -29335.985605 eV Core-core repulsion = 25420.244692 eV Total energy + Delta-G solvation = -3915.740913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09663 -39.65564 -38.43413 -36.24468 -34.75627 -33.97573 -32.73189 -31.54744 -31.36173 -29.91282 -27.76460 -27.08931 -25.76830 -24.23752 -23.97260 -22.76295 -22.03925 -21.29335 -19.79045 -19.36055 -17.61480 -17.15356 -16.92742 -16.37572 -15.87498 -15.43382 -15.39099 -15.04572 -14.53096 -14.41463 -14.20746 -13.83403 -13.77317 -13.66032 -13.36733 -13.12261 -13.08301 -12.97548 -12.85641 -12.65888 -12.42959 -12.09213 -11.79606 -11.34260 -11.00222 -10.96929 -10.89516 -10.63536 -10.31142 -10.27736 -10.19119 -10.02209 -10.00459 -9.63502 -9.53517 -9.13096 -9.00327 -8.55936 -8.45213 -6.73235 -5.86497 -3.34280 0.47982 0.92697 2.76681 2.98029 3.35407 3.40758 3.41538 3.56109 4.02491 4.24651 4.35092 4.40613 4.47389 4.57905 4.67304 4.79997 4.83191 5.09756 5.19334 5.24363 5.25664 5.33873 5.36386 5.39181 5.46325 5.61983 5.64178 5.71349 5.76293 5.84432 5.89459 5.92590 6.07676 6.10758 6.21426 6.29516 6.30662 6.42546 6.58332 6.65036 6.83162 7.08682 7.45743 7.47693 7.58507 7.68871 7.86386 8.19913 8.31221 9.07317 9.70211 10.29276 11.21624 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003463 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.376368 B = 8083.682549 C = 9186.027096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.484 5.484 5 C 0.111 3.889 6 C -0.172 4.172 7 C 0.560 3.440 8 O -0.528 6.528 9 N -0.602 5.602 10 C 0.089 3.911 11 C -0.124 4.124 12 C 0.076 3.924 13 H 0.053 0.947 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.144 3.856 17 N -0.586 5.586 18 C -0.263 4.263 19 H 0.071 0.929 20 C 0.010 3.990 21 N -0.900 5.900 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.137 3.863 27 H 0.037 0.963 28 C 0.124 3.876 29 C -0.022 4.022 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.029 0.971 42 H 0.092 0.908 43 H 0.256 0.744 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 17.924 0.344 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.043 4.043 4 N -0.191 5.191 5 C -0.046 4.046 6 C -0.177 4.177 7 C 0.347 3.653 8 O -0.405 6.405 9 N -0.335 5.335 10 C -0.034 4.034 11 C -0.163 4.163 12 C 0.017 3.983 13 H 0.071 0.929 14 O -0.308 6.308 15 C -0.039 4.039 16 C 0.018 3.982 17 N -0.311 5.311 18 C -0.392 4.392 19 H 0.088 0.912 20 C -0.190 4.190 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.029 3.971 27 H 0.054 0.946 28 C 0.003 3.997 29 C -0.049 4.049 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.192 0.808 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.219 18.033 0.417 20.257 hybrid contribution 0.147 -1.553 0.836 1.770 sum -9.072 16.480 1.253 18.854 Atomic orbital electron populations 1.20734 0.89648 1.03417 1.02885 1.20924 0.97984 0.93741 1.02065 1.22882 0.90032 0.97591 0.93805 1.67765 1.08012 1.30809 1.12551 1.23573 1.01129 0.86730 0.93205 1.21059 0.95176 0.95181 1.06313 1.18057 0.81007 0.87434 0.78833 1.90812 1.69734 1.33743 1.46193 1.48151 1.15115 1.16116 1.54152 1.22460 0.99856 0.88205 0.92867 1.21856 0.99422 0.98577 0.96400 1.22434 0.95137 0.94493 0.86277 0.92889 1.87742 1.56139 1.58045 1.28846 1.23336 0.89721 0.90414 1.00400 1.21397 0.96913 0.92807 0.87036 1.43979 1.43186 1.36302 1.07617 1.19058 1.43256 0.91604 0.85233 0.91190 1.25130 1.00924 0.95826 0.97095 1.69999 1.49376 1.08238 1.26678 0.86351 0.79302 0.78344 0.82689 1.20609 1.21520 1.20867 1.21296 0.92525 0.89410 0.93883 0.94574 1.21844 0.93583 0.86299 0.97999 1.21625 0.92365 0.99030 0.91849 0.90655 0.90954 0.90988 0.82410 0.80815 0.90488 0.88121 0.90012 0.90803 0.90044 0.94067 0.95329 0.89001 0.93379 0.90606 0.87731 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.03 36.00 0.36 -0.29 16 2 C -0.15 -1.31 5.89 -104.54 -0.62 -1.92 16 3 C 0.11 1.03 10.85 -17.47 -0.19 0.84 16 4 N -0.48 -5.32 10.35 -12.91 -0.13 -5.45 16 5 C 0.11 1.24 8.61 -17.13 -0.15 1.09 16 6 C -0.17 -2.23 5.50 -104.82 -0.58 -2.80 16 7 C 0.56 9.15 7.48 -12.33 -0.09 9.06 16 8 O -0.53 -10.68 16.14 5.32 0.09 -10.60 16 9 N -0.60 -9.44 2.98 -173.80 -0.52 -9.96 16 10 C 0.09 1.06 4.67 -3.67 -0.02 1.04 16 11 C -0.12 -1.70 5.82 -26.65 -0.16 -1.85 16 12 C 0.08 1.36 2.48 -26.63 -0.07 1.30 16 13 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 14 O -0.39 -7.57 10.49 -35.23 -0.37 -7.94 16 15 C 0.04 0.76 6.96 37.25 0.26 1.02 16 16 C 0.14 3.41 5.40 -3.49 -0.02 3.39 16 17 N -0.59 -14.44 3.03 -164.38 -0.50 -14.94 16 18 C -0.26 -6.96 8.82 -15.06 -0.13 -7.09 16 19 H 0.07 1.80 6.33 -52.48 -0.33 1.46 16 20 C 0.01 0.27 4.99 -17.43 -0.09 0.19 16 21 N -0.90 -25.72 11.26 55.49 0.63 -25.09 16 22 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.14 2.88 3.03 -67.52 -0.20 2.68 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 28 C 0.12 2.39 4.52 -3.70 -0.02 2.37 16 29 C -0.02 -0.26 9.41 -38.87 -0.37 -0.62 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 32 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 33 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.18 1.66 5.22 -52.49 -0.27 1.39 16 35 H 0.08 0.78 7.95 -51.93 -0.41 0.36 16 36 H 0.10 1.03 4.08 -51.93 -0.21 0.82 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 2.35 6.36 -51.93 -0.33 2.02 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.08 1.44 7.36 -51.92 -0.38 1.05 16 45 H 0.10 2.35 6.80 -51.93 -0.35 1.99 16 46 H 0.15 1.64 7.96 -52.48 -0.42 1.23 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.48 359.34 -8.98 -41.46 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.49 Total: 2.33 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -2.06 Total: 8.40 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.52 Total: -55.44 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.28 Total: -18.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.48 -8.98 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.380 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds