Wall clock time and date at job start Tue Mar 31 2020 16:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38349 * 120.34944 * 2 1 4 4 N 1.31931 * 121.08142 * 180.02562 * 3 2 1 5 5 C 1.31691 * 121.87955 * 359.67055 * 4 3 2 6 6 C 1.39525 * 120.56257 * 0.59042 * 5 4 3 7 7 C 1.47842 * 120.55580 * 179.73115 * 6 5 4 8 8 O 1.21552 * 120.00260 * 152.08900 * 7 6 5 9 9 N 1.34777 * 119.99885 * 332.07855 * 7 6 5 10 10 C 1.46841 * 120.40838 * 353.98823 * 9 7 6 11 11 C 1.53368 * 109.25092 * 232.21333 * 10 9 7 12 12 C 1.52788 * 108.81198 * 306.17140 * 11 10 9 13 13 H 1.09004 * 109.34011 * 303.34350 * 12 11 10 14 14 O 1.42599 * 111.11870 * 182.55677 * 12 11 10 15 15 C 1.43147 * 113.63395 * 176.38917 * 14 12 11 16 16 C 1.53186 * 109.69746 * 61.71314 * 15 14 12 17 17 N 1.47331 * 108.81037 * 308.70266 * 16 15 14 18 18 C 1.36940 * 121.34447 * 230.30259 * 17 16 15 19 19 H 1.08005 * 119.99678 * 150.50073 * 18 17 16 20 20 C 1.38809 * 119.99908 * 330.50425 * 18 17 16 21 21 N 1.31617 * 120.00519 * 345.51227 * 20 18 17 22 22 Si 1.86801 * 119.99917 * 165.51568 * 20 18 17 23 23 H 1.48499 * 109.47248 * 59.99462 * 22 20 18 24 24 H 1.48503 * 109.47328 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47025 * 299.99740 * 22 20 18 26 26 C 1.46869 * 117.35323 * 50.33077 * 17 16 15 27 27 H 1.08998 * 110.22094 * 67.95706 * 26 17 16 28 28 C 1.47130 * 120.40671 * 173.96373 * 9 7 6 29 29 C 1.38362 * 120.34988 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46984 * 269.97818 * 1 2 3 31 31 H 1.08994 * 109.47264 * 29.98382 * 1 2 3 32 32 H 1.09009 * 109.47158 * 149.98563 * 1 2 3 33 33 H 1.08005 * 119.45852 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.71774 * 180.29212 * 5 4 3 35 35 H 1.08998 * 109.50636 * 112.27763 * 10 9 7 36 36 H 1.08998 * 109.54124 * 352.17202 * 10 9 7 37 37 H 1.08996 * 109.57843 * 186.37157 * 11 10 9 38 38 H 1.09002 * 109.57898 * 65.96479 * 11 10 9 39 39 H 1.09001 * 109.42500 * 181.77180 * 15 14 12 40 40 H 1.09005 * 109.42535 * 301.65511 * 15 14 12 41 41 H 1.09000 * 109.58101 * 68.55178 * 16 15 14 42 42 H 1.08997 * 109.58885 * 188.96088 * 16 15 14 43 43 H 0.96997 * 120.00657 * 180.02562 * 21 20 18 44 44 H 1.09008 * 109.72931 * 246.46900 * 28 9 7 45 45 H 1.09006 * 109.72806 * 7.08847 * 28 9 7 46 46 H 1.08003 * 120.85317 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1939 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1015 0.0054 6 6 3.6053 -1.1436 0.0001 7 6 4.4023 -2.3889 0.0008 8 8 3.9444 -3.4033 0.4894 9 7 5.6365 -2.3993 -0.5407 10 6 6.1472 -1.2190 -1.2495 11 6 6.6506 -1.6402 -2.6356 12 6 7.6580 -2.7768 -2.4696 13 1 8.4644 -2.4513 -1.8123 14 8 8.2031 -3.1682 -3.7278 15 6 9.2150 -4.1755 -3.6265 16 6 8.6186 -5.4468 -3.0144 17 7 7.9144 -5.0900 -1.7705 18 6 8.1464 -5.7650 -0.6018 19 1 8.0342 -5.2587 0.3456 20 6 8.5258 -7.0998 -0.6349 21 7 8.3900 -7.7954 -1.7439 22 14 9.2293 -7.9090 0.8948 23 1 8.2301 -7.8471 1.9916 24 1 9.5527 -9.3281 0.5999 25 1 10.4638 -7.1953 1.3090 26 6 6.9528 -3.9816 -1.8335 27 1 6.0915 -4.2640 -2.4389 28 6 6.4889 -3.5932 -0.4283 29 6 2.2061 -1.1940 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3634 -0.8899 -0.5141 33 1 1.6628 2.1274 0.0004 34 1 5.3135 0.1560 0.0095 35 1 6.9679 -0.7804 -0.6819 36 1 5.3482 -0.4858 -1.3596 37 1 7.1331 -0.7925 -3.1221 38 1 5.8109 -1.9818 -3.2409 39 1 9.6044 -4.3994 -4.6196 40 1 10.0248 -3.8135 -2.9928 41 1 7.9162 -5.8956 -3.7168 42 1 9.4171 -6.1543 -2.7910 43 1 8.6548 -8.7283 -1.7670 44 1 7.3540 -3.3703 0.1963 45 1 5.9192 -4.4120 0.0112 46 1 1.6858 -2.1405 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074200744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:14 Heat of formation + Delta-G solvation = -16.335873 kcal Electronic energy + Delta-G solvation = -29336.950751 eV Core-core repulsion = 25420.244692 eV Total energy + Delta-G solvation = -3916.706059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16174 -40.88745 -39.83688 -37.62792 -36.56920 -34.75164 -33.95410 -33.17185 -32.75588 -31.40754 -29.06958 -28.23896 -27.20211 -25.68045 -25.19483 -23.73921 -23.57797 -22.64120 -21.47961 -20.58310 -18.75895 -18.68202 -17.98766 -17.45363 -17.32637 -17.07109 -16.80921 -16.49428 -16.15478 -15.69011 -15.40371 -15.33695 -14.99261 -14.78026 -14.71855 -14.59306 -14.24130 -14.04736 -13.92477 -13.59347 -13.48465 -13.18468 -13.04444 -12.90463 -12.81021 -12.55892 -12.45869 -12.29988 -12.11301 -11.95604 -11.81021 -11.33157 -11.25720 -10.89666 -10.76230 -10.54786 -10.49641 -9.92255 -9.80217 -8.74495 -7.93993 -5.45191 -0.39467 0.11023 1.44123 1.45681 1.52117 1.57908 1.75512 2.44626 2.66741 2.80596 3.18942 3.22914 3.39193 3.46665 3.72924 3.75391 3.81563 3.87292 3.90123 4.01416 4.14043 4.16125 4.20739 4.34501 4.41987 4.47442 4.52195 4.54324 4.57862 4.74893 4.75726 4.82404 4.83561 4.91517 4.96947 5.05539 5.08858 5.16006 5.22620 5.24576 5.34802 5.50627 5.57897 5.59103 6.21600 6.24109 6.31968 6.78182 6.93445 7.02138 7.68926 8.25793 9.12191 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016075 B = 0.003463 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.376368 B = 8083.682549 C = 9186.027096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.121 3.879 4 N -0.493 5.493 5 C 0.115 3.885 6 C -0.190 4.190 7 C 0.557 3.443 8 O -0.582 6.582 9 N -0.601 5.601 10 C 0.088 3.912 11 C -0.116 4.116 12 C 0.081 3.919 13 H 0.063 0.937 14 O -0.392 6.392 15 C 0.052 3.948 16 C 0.148 3.852 17 N -0.604 5.604 18 C -0.266 4.266 19 H 0.075 0.925 20 C -0.045 4.045 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.270 1.270 26 C 0.133 3.867 27 H 0.000 1.000 28 C 0.139 3.861 29 C -0.038 4.038 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.196 0.804 34 H 0.192 0.808 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.053 0.947 41 H -0.005 1.005 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 22.175 0.698 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C -0.035 4.035 4 N -0.201 5.201 5 C -0.042 4.042 6 C -0.195 4.195 7 C 0.346 3.654 8 O -0.462 6.462 9 N -0.332 5.332 10 C -0.033 4.033 11 C -0.154 4.154 12 C 0.022 3.978 13 H 0.081 0.919 14 O -0.311 6.311 15 C -0.025 4.025 16 C 0.022 3.978 17 N -0.329 5.329 18 C -0.395 4.395 19 H 0.093 0.907 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.195 1.195 26 C 0.026 3.974 27 H 0.018 0.982 28 C 0.016 3.984 29 C -0.065 4.065 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.089 0.911 33 H 0.213 0.787 34 H 0.208 0.792 35 H 0.128 0.872 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.013 0.987 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.401 22.351 0.756 24.259 hybrid contribution 0.047 -2.825 0.710 2.913 sum -9.354 19.526 1.465 21.700 Atomic orbital electron populations 1.20828 0.87296 1.04603 1.03870 1.21223 0.99577 0.92637 1.00400 1.23534 0.89618 0.98913 0.91484 1.67874 1.08995 1.30217 1.12973 1.23723 1.01946 0.85877 0.92637 1.20798 0.95360 0.94047 1.09315 1.18669 0.80973 0.88094 0.77649 1.90776 1.70864 1.36023 1.48567 1.48176 1.14711 1.16017 1.54321 1.22827 1.01677 0.86905 0.91871 1.21893 0.97965 0.97982 0.97602 1.22515 0.95902 0.93818 0.85589 0.91878 1.87751 1.56129 1.57498 1.29736 1.23182 0.89531 0.88093 1.01734 1.21267 0.95437 0.94708 0.86357 1.44279 1.44200 1.37023 1.07369 1.19408 1.41964 0.91905 0.86246 0.90696 1.25908 1.01903 0.96502 0.99815 1.70162 1.51034 1.08170 1.28641 0.85347 0.78817 0.77079 0.79255 1.20612 1.21938 1.19501 1.21439 0.91209 0.89946 0.94820 0.98220 1.21374 0.93517 0.86903 0.96587 1.21746 0.92173 0.99949 0.92604 0.89629 0.88497 0.91140 0.78739 0.79154 0.87238 0.85611 0.86355 0.92023 0.87298 0.92875 0.98716 0.91393 0.93932 0.89973 0.91952 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.03 71.23 0.71 -0.25 16 2 C -0.14 -2.11 5.89 -19.81 -0.12 -2.22 16 3 C 0.12 1.72 10.85 84.70 0.92 2.64 16 4 N -0.49 -9.06 10.35 -194.75 -2.01 -11.07 16 5 C 0.11 2.27 8.61 85.02 0.73 3.00 16 6 C -0.19 -4.78 5.50 -19.99 -0.11 -4.89 16 7 C 0.56 18.71 7.48 86.79 0.65 19.36 16 8 O -0.58 -25.16 16.14 -3.88 -0.06 -25.22 16 9 N -0.60 -18.80 2.98 -822.04 -2.45 -21.25 16 10 C 0.09 1.86 4.67 86.44 0.40 2.26 16 11 C -0.12 -2.86 5.82 30.65 0.18 -2.69 16 12 C 0.08 2.79 2.48 30.66 0.08 2.86 16 13 H 0.06 2.09 8.13 -2.38 -0.02 2.07 16 14 O -0.39 -14.72 10.49 -148.98 -1.56 -16.28 16 15 C 0.05 1.99 6.96 72.04 0.50 2.49 16 16 C 0.15 7.28 5.40 86.28 0.47 7.75 16 17 N -0.60 -30.92 3.03 -673.97 -2.04 -32.97 16 18 C -0.27 -14.57 8.82 84.03 0.74 -13.83 16 19 H 0.08 3.96 6.33 -2.91 -0.02 3.94 16 20 C -0.05 -2.55 4.99 84.86 0.42 -2.12 16 21 N -0.93 -55.99 11.26 21.65 0.24 -55.75 16 22 Si 0.97 45.25 29.58 68.60 2.03 47.28 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.13 5.81 3.03 45.05 0.14 5.95 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 C 0.14 5.56 4.52 86.26 0.39 5.95 16 29 C -0.04 -0.86 9.41 22.73 0.21 -0.65 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.42 8.09 -2.39 -0.02 0.40 16 32 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 33 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.19 2.95 5.22 -2.91 -0.02 2.94 16 35 H 0.11 1.71 7.95 -2.39 -0.02 1.69 16 36 H 0.13 2.13 4.08 -2.39 -0.01 2.12 16 37 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 40 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 41 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 42 H 0.07 3.64 6.36 -2.39 -0.02 3.63 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.08 3.15 7.36 -2.38 -0.02 3.13 16 45 H 0.06 3.01 6.80 -2.38 -0.02 3.00 16 46 H 0.13 3.20 7.96 -2.91 -0.02 3.18 16 Total: -1.00 -76.33 359.34 1.46 -74.88 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.00 Total: 14.79 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 6.32 Total: 25.60 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -6.26 Total: -121.04 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.63 Total: -41.51 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.33 1.46 -74.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.541 kcal (2) G-P(sol) polarization free energy of solvation -76.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds