Wall clock time and date at job start Tue Mar 31 2020 16:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38350 * 120.34689 * 2 1 4 4 N 1.31931 * 121.08040 * 179.97438 * 3 2 1 5 5 C 1.31698 * 121.87653 * 359.97438 * 4 3 2 6 6 C 1.39519 * 120.56593 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.55827 * 180.02562 * 6 5 4 8 8 O 1.21560 * 119.99481 * 314.20702 * 7 6 5 9 9 N 1.34770 * 120.00386 * 134.21594 * 7 6 5 10 10 C 1.46977 * 120.71764 * 4.30817 * 9 7 6 11 11 C 1.53161 * 108.44511 * 234.51268 * 10 9 7 12 12 C 1.52509 * 109.79405 * 305.47642 * 11 10 9 13 13 H 1.09002 * 108.93201 * 179.67134 * 12 11 10 14 14 O 1.42690 * 110.62443 * 298.71855 * 12 11 10 15 15 C 1.43067 * 113.87718 * 185.34281 * 14 12 11 16 16 C 1.53229 * 109.45088 * 298.36159 * 15 14 12 17 17 N 1.47176 * 108.69679 * 51.57656 * 16 15 14 18 18 C 1.36936 * 121.22373 * 129.02499 * 17 16 15 19 19 H 1.07998 * 120.00327 * 206.81019 * 18 17 16 20 20 C 1.38811 * 119.99964 * 26.80844 * 18 17 16 21 21 N 1.31622 * 120.00129 * 14.56488 * 20 18 17 22 22 Si 1.86803 * 120.00140 * 194.56367 * 20 18 17 23 23 H 1.48496 * 109.47011 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47191 * 120.00299 * 22 20 18 25 25 H 1.48504 * 109.47179 * 240.00113 * 22 20 18 26 26 C 1.47587 * 117.54968 * 309.05329 * 17 16 15 27 27 H 1.09001 * 110.31981 * 172.30880 * 26 17 16 28 28 C 1.46792 * 120.71910 * 184.03443 * 9 7 6 29 29 C 1.38352 * 120.34956 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47304 * 89.99792 * 1 2 3 31 31 H 1.08999 * 109.47040 * 210.00183 * 1 2 3 32 32 H 1.09001 * 109.46668 * 329.99892 * 1 2 3 33 33 H 1.07999 * 119.46273 * 0.25595 * 3 2 1 34 34 H 1.08001 * 119.71573 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.64261 * 354.19640 * 10 9 7 36 36 H 1.09003 * 109.64324 * 114.82944 * 10 9 7 37 37 H 1.09000 * 109.41716 * 65.58025 * 11 10 9 38 38 H 1.09007 * 109.41596 * 185.37666 * 11 10 9 39 39 H 1.08997 * 109.47396 * 178.36565 * 15 14 12 40 40 H 1.09001 * 109.47522 * 58.35208 * 15 14 12 41 41 H 1.09008 * 109.59685 * 291.81821 * 16 15 14 42 42 H 1.08998 * 109.60265 * 171.34917 * 16 15 14 43 43 H 0.96999 * 120.00044 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.51958 * 245.64224 * 28 9 7 45 45 H 1.08998 * 109.52071 * 5.82691 * 28 9 7 46 46 H 1.08007 * 120.85230 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2108 0.0005 5 6 4.2350 0.1015 0.0015 6 6 3.6054 -1.1436 0.0027 7 6 4.4023 -2.3889 0.0044 8 8 5.3485 -2.5059 -0.7498 9 7 4.0797 -3.3943 0.8418 10 6 2.8843 -3.3084 1.6926 11 6 3.3071 -3.5365 3.1469 12 6 4.0659 -4.8543 3.2636 13 1 4.3648 -4.9996 4.3017 14 8 3.2355 -5.9483 2.8768 15 6 3.8381 -7.2308 3.0742 16 6 5.1028 -7.3379 2.2157 17 7 5.9506 -6.1634 2.4759 18 6 7.2758 -6.3006 2.7924 19 1 7.7713 -5.5438 3.3823 20 6 7.9823 -7.4126 2.3551 21 7 7.4804 -8.1825 1.4129 22 14 9.6455 -7.8164 3.1037 23 1 9.9828 -6.8034 4.1358 24 1 9.5930 -9.1618 3.7298 25 1 10.6826 -7.8052 2.0408 26 6 5.3198 -4.8323 2.3838 27 1 6.0098 -4.0618 2.7280 28 6 4.9113 -4.6014 0.9197 29 6 2.2061 -1.1939 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6630 2.1274 0.0042 34 1 5.3136 0.1560 0.0023 35 1 2.4336 -2.3210 1.5927 36 1 2.1672 -4.0736 1.3953 37 1 3.9505 -2.7180 3.4699 38 1 2.4210 -3.5712 3.7808 39 1 3.1348 -8.0113 2.7842 40 1 4.1012 -7.3508 4.1252 41 1 4.8277 -7.3639 1.1612 42 1 5.6460 -8.2462 2.4766 43 1 7.9739 -8.9597 1.1075 44 1 4.3438 -5.4586 0.5575 45 1 5.8035 -4.4691 0.3076 46 1 1.6858 -2.1404 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074200746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:24 Heat of formation + Delta-G solvation = -3.951039 kcal Electronic energy + Delta-G solvation = -29559.611383 eV Core-core repulsion = 25643.442370 eV Total energy + Delta-G solvation = -3916.169012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.96212 -39.68947 -38.40614 -35.88563 -34.69021 -33.93148 -32.69731 -31.61850 -31.38285 -29.47938 -27.63833 -27.43384 -25.66836 -24.03738 -23.83787 -23.05020 -22.38294 -21.48895 -19.66826 -18.44587 -17.34587 -17.20295 -16.91836 -16.68777 -15.81872 -15.48713 -15.28973 -15.05122 -14.56223 -14.45139 -14.12258 -14.01583 -13.65932 -13.58069 -13.50450 -13.16464 -13.02090 -12.87506 -12.67952 -12.45934 -12.33846 -12.07765 -11.99731 -11.39983 -11.09431 -11.04263 -10.83283 -10.67221 -10.27122 -10.24095 -10.15037 -10.02586 -9.85567 -9.65989 -9.41344 -9.15638 -9.03938 -8.65133 -8.31951 -6.79479 -5.89121 -3.34853 0.61232 0.93894 2.78395 3.11718 3.32137 3.40137 3.42034 3.57821 4.14477 4.27311 4.37822 4.42666 4.47282 4.59438 4.70295 4.85397 4.93524 5.09461 5.23626 5.25998 5.29025 5.31471 5.37878 5.39372 5.56775 5.62603 5.70016 5.72196 5.82271 5.87003 5.94010 5.99669 6.03472 6.11057 6.25240 6.30625 6.37249 6.39150 6.58616 6.67970 6.87546 7.05594 7.45911 7.59035 7.67579 7.70202 7.84303 8.25709 8.31328 9.05473 9.66347 10.23422 11.18134 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.003396 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.037963 B = 8241.809574 C = 9097.629614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.482 5.482 5 C 0.143 3.857 6 C -0.164 4.164 7 C 0.556 3.444 8 O -0.531 6.531 9 N -0.596 5.596 10 C 0.100 3.900 11 C -0.122 4.122 12 C 0.080 3.920 13 H 0.052 0.948 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.137 3.863 17 N -0.584 5.584 18 C -0.255 4.255 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.907 3.093 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.135 3.865 27 H 0.076 0.924 28 C 0.106 3.894 29 C -0.051 4.051 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.029 0.971 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.138 13.032 1.130 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C -0.046 4.046 4 N -0.189 5.189 5 C -0.015 4.015 6 C -0.170 4.170 7 C 0.342 3.658 8 O -0.408 6.408 9 N -0.328 5.328 10 C -0.023 4.023 11 C -0.161 4.161 12 C 0.021 3.979 13 H 0.070 0.930 14 O -0.308 6.308 15 C -0.039 4.039 16 C 0.011 3.989 17 N -0.307 5.307 18 C -0.384 4.384 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.026 3.974 27 H 0.094 0.906 28 C -0.017 4.017 29 C -0.077 4.077 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.238 13.591 0.600 20.427 hybrid contribution 0.692 -1.306 0.402 1.532 sum -14.545 12.285 1.002 19.066 Atomic orbital electron populations 1.20733 0.89694 1.03406 1.02844 1.20881 0.97853 0.93778 1.02180 1.22860 0.90034 0.97559 0.94168 1.67765 1.07984 1.30848 1.12347 1.22890 1.00703 0.85921 0.91983 1.21081 0.94615 0.95917 1.05339 1.18114 0.84088 0.82682 0.80887 1.90822 1.29367 1.80976 1.39682 1.48227 1.26757 1.18380 1.39467 1.22068 0.87626 1.02254 0.90375 1.21799 1.01094 0.96694 0.96518 1.22240 0.91358 0.86344 0.97969 0.92973 1.87702 1.41843 1.14443 1.86803 1.23343 0.97015 0.83862 0.99649 1.21501 0.88805 0.92842 0.95717 1.44313 1.06941 0.98318 1.81089 1.19223 0.85420 1.07227 1.26574 0.91265 1.25091 0.97979 0.99727 0.96543 1.70002 1.38838 1.17664 1.27955 0.86150 0.83568 0.78004 0.78617 1.20186 1.21488 1.21521 1.21697 0.93084 0.90444 0.92185 0.90627 1.22489 0.94934 0.84237 1.00030 1.21768 0.92674 0.98953 0.94328 0.90730 0.91008 0.90963 0.82522 0.81864 0.89626 0.90309 0.90459 0.90374 0.90117 0.94098 0.95337 0.88379 0.93441 0.91032 0.89085 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.03 36.01 0.36 -0.22 16 2 C -0.14 -1.24 5.89 -104.54 -0.62 -1.85 16 3 C 0.11 1.04 10.85 -17.47 -0.19 0.85 16 4 N -0.48 -5.86 10.35 -12.91 -0.13 -6.00 16 5 C 0.14 1.86 10.87 -17.13 -0.19 1.67 16 6 C -0.16 -2.18 5.20 -104.82 -0.55 -2.72 16 7 C 0.56 9.34 7.32 -12.33 -0.09 9.25 16 8 O -0.53 -11.10 16.43 5.31 0.09 -11.01 16 9 N -0.60 -9.65 2.95 -173.63 -0.51 -10.17 16 10 C 0.10 1.25 5.12 -3.70 -0.02 1.23 16 11 C -0.12 -1.59 5.82 -26.90 -0.16 -1.74 16 12 C 0.08 1.37 2.73 -26.88 -0.07 1.30 16 13 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 14 O -0.39 -6.96 9.58 -35.23 -0.34 -7.29 16 15 C 0.04 0.73 6.97 37.28 0.26 0.99 16 16 C 0.14 3.12 4.92 -3.55 -0.02 3.10 16 17 N -0.58 -14.04 2.71 -163.61 -0.44 -14.48 16 18 C -0.26 -6.79 9.70 -15.06 -0.15 -6.94 16 19 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 20 C 0.01 0.15 5.01 -17.43 -0.09 0.07 16 21 N -0.90 -25.34 11.04 55.49 0.61 -24.73 16 22 Si 0.91 21.34 29.58 -169.99 -5.03 16.31 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 C 0.13 2.73 3.04 -66.85 -0.20 2.53 16 27 H 0.08 1.58 7.99 -51.93 -0.42 1.17 16 28 C 0.11 2.13 5.63 -3.49 -0.02 2.11 16 29 C -0.05 -0.53 7.14 -38.87 -0.28 -0.80 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 35 H 0.09 0.88 4.18 -51.93 -0.22 0.66 16 36 H 0.08 0.99 7.94 -51.93 -0.41 0.57 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.03 0.69 7.17 -51.92 -0.37 0.32 16 42 H 0.10 2.48 6.09 -51.93 -0.32 2.17 16 43 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.07 1.52 6.57 -51.93 -0.34 1.18 16 45 H 0.09 2.12 7.02 -51.93 -0.36 1.76 16 46 H 0.14 1.28 6.64 -52.48 -0.35 0.93 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -31.65 361.11 -8.88 -40.53 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.56 Total: 2.59 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.01 Total: 8.81 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.48 Total: -55.38 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.25 Total: -18.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.65 -8.88 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.574 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds