Wall clock time and date at job start Tue Mar 31 2020 16:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38350 * 120.34689 * 2 1 4 4 N 1.31931 * 121.08040 * 179.97438 * 3 2 1 5 5 C 1.31698 * 121.87653 * 359.97438 * 4 3 2 6 6 C 1.39519 * 120.56593 * 359.97438 * 5 4 3 7 7 C 1.47843 * 120.55827 * 180.02562 * 6 5 4 8 8 O 1.21560 * 119.99481 * 314.20702 * 7 6 5 9 9 N 1.34770 * 120.00386 * 134.21594 * 7 6 5 10 10 C 1.46977 * 120.71764 * 4.30817 * 9 7 6 11 11 C 1.53161 * 108.44511 * 234.51268 * 10 9 7 12 12 C 1.52509 * 109.79405 * 305.47642 * 11 10 9 13 13 H 1.09002 * 108.93201 * 179.67134 * 12 11 10 14 14 O 1.42690 * 110.62443 * 298.71855 * 12 11 10 15 15 C 1.43067 * 113.87718 * 185.34281 * 14 12 11 16 16 C 1.53229 * 109.45088 * 298.36159 * 15 14 12 17 17 N 1.47176 * 108.69679 * 51.57656 * 16 15 14 18 18 C 1.36936 * 121.22373 * 129.02499 * 17 16 15 19 19 H 1.07998 * 120.00327 * 206.81019 * 18 17 16 20 20 C 1.38811 * 119.99964 * 26.80844 * 18 17 16 21 21 N 1.31622 * 120.00129 * 14.56488 * 20 18 17 22 22 Si 1.86803 * 120.00140 * 194.56367 * 20 18 17 23 23 H 1.48496 * 109.47011 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47191 * 120.00299 * 22 20 18 25 25 H 1.48504 * 109.47179 * 240.00113 * 22 20 18 26 26 C 1.47587 * 117.54968 * 309.05329 * 17 16 15 27 27 H 1.09001 * 110.31981 * 172.30880 * 26 17 16 28 28 C 1.46792 * 120.71910 * 184.03443 * 9 7 6 29 29 C 1.38352 * 120.34956 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47304 * 89.99792 * 1 2 3 31 31 H 1.08999 * 109.47040 * 210.00183 * 1 2 3 32 32 H 1.09001 * 109.46668 * 329.99892 * 1 2 3 33 33 H 1.07999 * 119.46273 * 0.25595 * 3 2 1 34 34 H 1.08001 * 119.71573 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.64261 * 354.19640 * 10 9 7 36 36 H 1.09003 * 109.64324 * 114.82944 * 10 9 7 37 37 H 1.09000 * 109.41716 * 65.58025 * 11 10 9 38 38 H 1.09007 * 109.41596 * 185.37666 * 11 10 9 39 39 H 1.08997 * 109.47396 * 178.36565 * 15 14 12 40 40 H 1.09001 * 109.47522 * 58.35208 * 15 14 12 41 41 H 1.09008 * 109.59685 * 291.81821 * 16 15 14 42 42 H 1.08998 * 109.60265 * 171.34917 * 16 15 14 43 43 H 0.96999 * 120.00044 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.51958 * 245.64224 * 28 9 7 45 45 H 1.08998 * 109.52071 * 5.82691 * 28 9 7 46 46 H 1.08007 * 120.85230 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5252 1.2108 0.0005 5 6 4.2350 0.1015 0.0015 6 6 3.6054 -1.1436 0.0027 7 6 4.4023 -2.3889 0.0044 8 8 5.3485 -2.5059 -0.7498 9 7 4.0797 -3.3943 0.8418 10 6 2.8843 -3.3084 1.6926 11 6 3.3071 -3.5365 3.1469 12 6 4.0659 -4.8543 3.2636 13 1 4.3648 -4.9996 4.3017 14 8 3.2355 -5.9483 2.8768 15 6 3.8381 -7.2308 3.0742 16 6 5.1028 -7.3379 2.2157 17 7 5.9506 -6.1634 2.4759 18 6 7.2758 -6.3006 2.7924 19 1 7.7713 -5.5438 3.3823 20 6 7.9823 -7.4126 2.3551 21 7 7.4804 -8.1825 1.4129 22 14 9.6455 -7.8164 3.1037 23 1 9.9828 -6.8034 4.1358 24 1 9.5930 -9.1618 3.7298 25 1 10.6826 -7.8052 2.0408 26 6 5.3198 -4.8323 2.3838 27 1 6.0098 -4.0618 2.7280 28 6 4.9113 -4.6014 0.9197 29 6 2.2061 -1.1939 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6630 2.1274 0.0042 34 1 5.3136 0.1560 0.0023 35 1 2.4336 -2.3210 1.5927 36 1 2.1672 -4.0736 1.3953 37 1 3.9505 -2.7180 3.4699 38 1 2.4210 -3.5712 3.7808 39 1 3.1348 -8.0113 2.7842 40 1 4.1012 -7.3508 4.1252 41 1 4.8277 -7.3639 1.1612 42 1 5.6460 -8.2462 2.4766 43 1 7.9739 -8.9597 1.1075 44 1 4.3438 -5.4586 0.5575 45 1 5.8035 -4.4691 0.3076 46 1 1.6858 -2.1404 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074200746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:23 Heat of formation + Delta-G solvation = -24.954800 kcal Electronic energy + Delta-G solvation = -29560.522174 eV Core-core repulsion = 25643.442370 eV Total energy + Delta-G solvation = -3917.079804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06778 -40.93798 -39.79433 -37.29460 -36.46856 -34.69318 -33.90791 -33.22934 -32.79509 -30.98035 -29.27607 -28.18864 -26.95316 -25.71877 -24.88711 -24.53553 -23.45551 -22.94003 -21.01535 -19.86749 -18.94803 -18.42638 -18.05763 -17.70308 -17.11942 -17.11136 -16.91083 -16.49214 -16.17691 -15.69666 -15.34431 -15.21236 -15.01414 -14.87643 -14.47646 -14.45538 -14.24085 -13.91728 -13.86290 -13.54520 -13.38412 -13.32400 -13.07417 -12.89766 -12.78736 -12.65665 -12.47546 -12.31138 -12.08960 -11.89211 -11.76794 -11.31426 -11.26745 -10.78732 -10.70406 -10.56455 -10.43748 -9.97995 -9.76402 -8.73104 -7.94522 -5.43523 -0.28512 0.12689 1.41488 1.44009 1.51550 1.54462 1.84126 2.43892 2.68706 2.86174 3.20399 3.21467 3.42211 3.51171 3.74334 3.79655 3.84551 3.91941 3.96574 4.08092 4.12789 4.19441 4.26280 4.41170 4.47032 4.54271 4.56035 4.59897 4.74679 4.77114 4.82474 4.86392 4.91426 4.93163 4.96579 5.00935 5.18627 5.22556 5.26451 5.28707 5.38575 5.54163 5.59463 5.63593 6.24144 6.29771 6.34115 6.84315 6.96375 7.03000 7.68578 8.22559 9.10036 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018978 B = 0.003396 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.037963 B = 8241.809574 C = 9097.629614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C 0.113 3.887 4 N -0.500 5.500 5 C 0.128 3.872 6 C -0.178 4.178 7 C 0.555 3.445 8 O -0.586 6.586 9 N -0.593 5.593 10 C 0.098 3.902 11 C -0.116 4.116 12 C 0.086 3.914 13 H 0.051 0.949 14 O -0.381 6.381 15 C 0.052 3.948 16 C 0.144 3.856 17 N -0.603 5.603 18 C -0.266 4.266 19 H 0.066 0.934 20 C -0.045 4.045 21 N -0.931 5.931 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.295 1.295 26 C 0.132 3.868 27 H 0.062 0.938 28 C 0.125 3.875 29 C -0.051 4.051 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.193 0.807 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.046 0.954 41 H 0.002 0.998 42 H 0.069 0.931 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.937 15.044 2.714 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.129 4.129 3 C -0.044 4.044 4 N -0.208 5.208 5 C -0.029 4.029 6 C -0.183 4.183 7 C 0.343 3.657 8 O -0.467 6.467 9 N -0.325 5.325 10 C -0.022 4.022 11 C -0.154 4.154 12 C 0.027 3.973 13 H 0.069 0.931 14 O -0.300 6.300 15 C -0.026 4.026 16 C 0.018 3.982 17 N -0.326 5.326 18 C -0.396 4.396 19 H 0.084 0.916 20 C -0.241 4.241 21 N -0.576 5.576 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.222 1.222 26 C 0.024 3.976 27 H 0.081 0.919 28 C 0.000 4.000 29 C -0.077 4.077 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.210 0.790 34 H 0.167 0.833 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.090 15.633 2.219 24.774 hybrid contribution 1.796 -1.805 -0.148 2.551 sum -17.293 13.828 2.071 22.239 Atomic orbital electron populations 1.20859 0.86625 1.05127 1.03965 1.21248 0.99734 0.92442 0.99488 1.23548 0.89148 0.99541 0.92191 1.67794 1.09619 1.30199 1.13138 1.22733 1.00529 0.86432 0.93254 1.20716 0.95673 0.93640 1.08281 1.18725 0.83581 0.83621 0.79739 1.90786 1.31989 1.82060 1.41910 1.48215 1.27349 1.16913 1.39977 1.22382 0.86024 1.04480 0.89362 1.21845 1.02191 0.94021 0.97323 1.22253 0.90244 0.88242 0.96576 0.93129 1.87718 1.41328 1.14204 1.86766 1.23171 0.95427 0.85179 0.98779 1.21335 0.90297 0.91438 0.95095 1.44534 1.06613 1.00103 1.81313 1.19495 0.86835 1.07093 1.26166 0.91605 1.25818 1.01285 0.99872 0.97133 1.70156 1.40103 1.18045 1.29340 0.85174 0.79442 0.77909 0.77707 1.19164 1.21049 1.22205 1.21839 0.94494 0.88388 0.92912 0.91933 1.21902 0.93632 0.85506 0.98985 1.21981 0.91129 1.00704 0.93873 0.89710 0.89756 0.88899 0.79042 0.83276 0.86411 0.89358 0.89601 0.86633 0.87228 0.93584 0.97999 0.91271 0.93878 0.92530 0.93721 0.82067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.03 71.24 0.71 0.17 16 2 C -0.13 -1.63 5.89 -19.81 -0.12 -1.74 16 3 C 0.11 1.70 10.85 84.70 0.92 2.62 16 4 N -0.50 -11.36 10.35 -194.75 -2.01 -13.37 16 5 C 0.13 3.34 10.87 85.02 0.92 4.26 16 6 C -0.18 -4.60 5.20 -19.99 -0.10 -4.70 16 7 C 0.55 19.27 7.32 86.79 0.64 19.91 16 8 O -0.59 -26.40 16.43 -3.90 -0.06 -26.47 16 9 N -0.59 -19.38 2.95 -821.51 -2.43 -21.81 16 10 C 0.10 2.20 5.12 86.34 0.44 2.64 16 11 C -0.12 -2.61 5.82 30.49 0.18 -2.43 16 12 C 0.09 2.81 2.73 30.50 0.08 2.90 16 13 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 14 O -0.38 -12.86 9.58 -148.98 -1.43 -14.29 16 15 C 0.05 1.89 6.97 72.06 0.50 2.39 16 16 C 0.14 6.80 4.92 86.33 0.42 7.23 16 17 N -0.60 -30.17 2.71 -671.55 -1.82 -31.99 16 18 C -0.27 -14.74 9.70 84.03 0.82 -13.92 16 19 H 0.07 3.60 7.87 -2.91 -0.02 3.58 16 20 C -0.05 -2.53 5.01 84.86 0.43 -2.10 16 21 N -0.93 -54.89 11.04 21.65 0.24 -54.66 16 22 Si 0.97 45.24 29.58 68.60 2.03 47.27 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 C 0.13 5.51 3.04 45.10 0.14 5.64 16 27 H 0.06 2.74 7.99 -2.39 -0.02 2.72 16 28 C 0.12 5.27 5.63 86.58 0.49 5.76 16 29 C -0.05 -0.90 7.14 22.73 0.16 -0.73 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.29 8.09 -2.39 -0.02 0.27 16 32 H 0.09 0.16 8.09 -2.39 -0.02 0.14 16 33 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 35 H 0.12 1.94 4.18 -2.39 -0.01 1.93 16 36 H 0.09 1.88 7.94 -2.39 -0.02 1.86 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 41 H 0.00 0.10 7.17 -2.38 -0.02 0.08 16 42 H 0.07 3.67 6.09 -2.39 -0.01 3.65 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.06 2.54 6.57 -2.39 -0.02 2.52 16 45 H 0.04 2.28 7.02 -2.39 -0.02 2.26 16 46 H 0.16 2.23 6.64 -2.91 -0.02 2.21 16 Total: -1.00 -75.24 361.11 2.13 -73.11 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.99 Total: 14.33 kcal Atomic # 6 Polarization: 21.26 SS G_CDS: 6.63 Total: 27.88 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -6.03 Total: -121.83 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -1.49 Total: -40.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -75.24 2.13 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074200746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.156 kcal (2) G-P(sol) polarization free energy of solvation -75.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds