Wall clock time and date at job start Tue Mar 31 2020 16:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38630 * 120.47096 * 2 1 4 4 C 1.38586 * 118.48774 * 180.28463 * 3 2 1 5 5 C 1.38605 * 119.35144 * 359.72283 * 4 3 2 6 6 N 1.31498 * 120.89726 * 0.02562 * 5 4 3 7 7 C 1.32737 * 121.64488 * 0.02562 * 6 5 4 8 8 C 1.48176 * 119.72081 * 179.97438 * 7 6 5 9 9 O 1.21519 * 119.99391 * 103.79932 * 8 7 6 10 10 N 1.34773 * 119.99934 * 283.79858 * 8 7 6 11 11 C 1.46981 * 120.71576 * 175.69221 * 10 8 7 12 12 C 1.53157 * 108.44629 * 125.48413 * 11 10 8 13 13 C 1.52518 * 109.79821 * 54.51445 * 12 11 10 14 14 H 1.08993 * 108.93459 * 180.34290 * 13 12 11 15 15 O 1.42691 * 110.62698 * 61.30108 * 13 12 11 16 16 C 1.43070 * 113.86934 * 174.64260 * 15 13 12 17 17 C 1.52811 * 109.51843 * 61.51500 * 16 15 13 18 18 N 1.47169 * 108.92722 * 308.65913 * 17 16 15 19 19 C 1.36934 * 121.22353 * 230.90670 * 18 17 16 20 20 H 1.07997 * 120.00006 * 150.31886 * 19 18 17 21 21 C 1.38812 * 120.00171 * 330.32283 * 19 18 17 22 22 N 1.31620 * 120.00261 * 144.69536 * 21 19 18 23 23 Si 1.86803 * 119.99770 * 324.69929 * 21 19 18 24 24 H 1.48500 * 109.47142 * 270.00107 * 23 21 19 25 25 H 1.48503 * 109.46999 * 30.00211 * 23 21 19 26 26 H 1.48504 * 109.47163 * 150.00175 * 23 21 19 27 27 C 1.47595 * 117.55374 * 50.63118 * 18 17 16 28 28 H 1.08998 * 110.31603 * 186.93608 * 27 18 17 29 29 C 1.46795 * 120.72385 * 355.71470 * 10 8 7 30 30 H 1.09000 * 109.47783 * 272.99569 * 1 2 3 31 31 H 1.09007 * 109.46865 * 32.99445 * 1 2 3 32 32 H 1.09002 * 109.46747 * 152.99254 * 1 2 3 33 33 H 1.08001 * 120.75718 * 359.97438 * 3 2 1 34 34 H 1.08000 * 120.32541 * 179.75396 * 4 3 2 35 35 H 1.07994 * 119.54668 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.64059 * 245.16455 * 11 10 8 37 37 H 1.08992 * 109.64551 * 5.79663 * 11 10 8 38 38 H 1.08996 * 109.42187 * 174.61238 * 12 11 10 39 39 H 1.08998 * 109.42026 * 294.41835 * 12 11 10 40 40 H 1.09001 * 109.47489 * 181.64329 * 16 15 13 41 41 H 1.09003 * 109.47331 * 301.65757 * 16 15 13 42 42 H 1.09007 * 109.53111 * 188.79530 * 17 16 15 43 43 H 1.09005 * 109.43965 * 68.46901 * 17 16 15 44 44 H 0.96999 * 119.99998 * 354.90313 * 22 21 19 45 45 H 1.09007 * 109.51960 * 114.36948 * 29 10 8 46 46 H 1.08997 * 109.57228 * 354.21623 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 -0.0061 5 6 4.2322 -0.0840 -0.0060 6 7 3.5406 -1.2024 -0.0009 7 6 2.2132 -1.2003 0.0040 8 6 1.4766 -2.4860 0.0091 9 8 0.9605 -2.8864 1.0339 10 7 1.3790 -3.2113 -1.1226 11 6 0.7341 -4.5320 -1.1147 12 6 -0.3721 -4.5375 -2.1739 13 6 0.2049 -4.1299 -3.5256 14 1 -0.5943 -4.1326 -4.2667 15 8 1.2088 -5.0540 -3.9430 16 6 1.7126 -4.8064 -5.2589 17 6 2.3657 -3.4256 -5.3041 18 7 1.4240 -2.4340 -4.7603 19 6 1.1255 -1.2875 -5.4469 20 1 0.1566 -0.8249 -5.3302 21 6 2.0682 -0.7197 -6.2929 22 7 1.6841 -0.1309 -7.4056 23 14 3.8821 -0.7915 -5.8522 24 1 4.2446 0.4053 -5.0512 25 1 4.1507 -2.0179 -5.0592 26 1 4.6930 -0.8188 -7.0960 27 6 0.8082 -2.7238 -3.4506 28 1 0.0455 -1.9806 -3.2183 29 6 1.9149 -2.6995 -2.3898 30 1 -0.3635 0.0537 1.0262 31 1 -0.3633 0.8620 -0.5597 32 1 -0.3633 -0.9156 -0.4667 33 1 1.6902 2.1415 -0.0004 34 1 4.1722 2.0597 -0.0102 35 1 5.3114 -0.1251 -0.0112 36 1 1.4703 -5.3006 -1.3499 37 1 0.3018 -4.7228 -0.1325 38 1 -0.7975 -5.5383 -2.2486 39 1 -1.1529 -3.8335 -1.8862 40 1 2.4500 -5.5672 -5.5149 41 1 0.8914 -4.8407 -5.9748 42 1 2.6093 -3.1713 -6.3357 43 1 3.2750 -3.4345 -4.7029 44 1 0.7517 -0.1578 -7.6717 45 1 2.7446 -3.3276 -2.7145 46 1 2.2647 -1.6765 -2.2517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074211708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:31 Heat of formation + Delta-G solvation = -26.420291 kcal Electronic energy + Delta-G solvation = -30562.554615 eV Core-core repulsion = 26645.411263 eV Total energy + Delta-G solvation = -3917.143352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.10166 -41.00408 -39.81696 -37.19823 -36.61389 -34.71465 -33.91640 -33.69137 -32.73448 -31.38909 -29.25268 -28.58387 -26.83524 -25.49765 -24.95315 -24.61622 -23.34912 -22.74630 -21.41727 -20.17349 -19.50979 -18.78248 -17.88480 -17.66238 -17.25005 -17.07592 -16.61557 -16.61344 -15.96040 -15.82522 -15.58521 -15.48647 -15.19924 -15.07114 -14.75878 -14.32700 -14.13133 -14.07982 -13.97863 -13.80256 -13.79050 -13.51815 -13.34612 -12.90699 -12.79918 -12.63586 -12.45695 -12.30543 -11.91190 -11.70945 -11.45714 -11.43237 -11.16671 -10.97593 -10.81231 -10.52232 -10.34593 -9.96817 -9.89329 -9.01811 -8.60212 -5.53413 -0.15733 0.21597 1.27216 1.47407 1.50900 1.70212 1.76082 2.52711 2.66026 2.74675 2.86904 3.01459 3.32190 3.58561 3.65691 3.77968 3.89799 3.94595 3.97810 4.01753 4.07055 4.12622 4.27831 4.34743 4.36539 4.43583 4.46727 4.49133 4.59642 4.64629 4.66362 4.75275 4.78624 4.84357 4.88019 4.91891 4.99414 5.07754 5.11223 5.15034 5.17731 5.36236 5.61741 5.78002 6.12632 6.20286 6.23176 6.75131 6.80084 6.87939 7.46113 8.04583 8.73874 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.006375 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.256955 B = 4391.201434 C = 6048.907724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.113 4.113 3 C -0.079 4.079 4 C -0.146 4.146 5 C 0.081 3.919 6 N -0.486 5.486 7 C 0.063 3.937 8 C 0.583 3.417 9 O -0.563 6.563 10 N -0.590 5.590 11 C 0.115 3.885 12 C -0.112 4.112 13 C 0.086 3.914 14 H 0.048 0.952 15 O -0.379 6.379 16 C 0.052 3.948 17 C 0.100 3.900 18 N -0.603 5.603 19 C -0.347 4.347 20 H 0.033 0.967 21 C -0.033 4.033 22 N -0.929 5.929 23 Si 1.052 2.948 24 H -0.295 1.295 25 H -0.241 1.241 26 H -0.296 1.296 27 C 0.132 3.868 28 H 0.066 0.934 29 C 0.123 3.877 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.172 0.828 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -2.748 13.341 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.116 4.116 3 C -0.105 4.105 4 C -0.165 4.165 5 C -0.078 4.078 6 N -0.197 5.197 7 C -0.075 4.075 8 C 0.369 3.631 9 O -0.442 6.442 10 N -0.322 5.322 11 C -0.006 4.006 12 C -0.150 4.150 13 C 0.027 3.973 14 H 0.066 0.934 15 O -0.298 6.298 16 C -0.026 4.026 17 C -0.025 4.025 18 N -0.328 5.328 19 C -0.476 4.476 20 H 0.051 0.949 21 C -0.233 4.233 22 N -0.568 5.568 23 Si 0.877 3.123 24 H -0.223 1.223 25 H -0.165 1.165 26 H -0.223 1.223 27 C 0.025 3.975 28 H 0.085 0.915 29 C -0.002 4.002 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.205 0.795 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.138 0.862 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.421 -3.450 13.470 14.114 hybrid contribution -2.013 1.023 -0.278 2.275 sum 0.408 -2.427 13.192 13.419 Atomic orbital electron populations 1.20797 0.88966 1.03305 1.03659 1.21084 0.98622 0.92988 0.98863 1.21917 0.94827 0.98299 0.95446 1.22772 0.95331 1.00658 0.97736 1.23383 1.01739 0.87324 0.95344 1.67544 1.06644 1.33731 1.11781 1.20820 0.90980 0.93434 1.02277 1.18156 0.78794 0.83059 0.83059 1.90715 1.49467 1.71328 1.32721 1.48144 1.57052 1.19059 1.07924 1.21727 0.95597 0.82604 1.00655 1.21793 0.97465 1.04560 0.91188 1.22208 0.89784 0.88522 0.96825 0.93365 1.87780 1.56850 1.52339 1.32860 1.23048 0.98541 0.97146 0.83833 1.22082 0.92752 0.89574 0.98118 1.44573 1.52273 1.19275 1.16642 1.19792 0.97865 1.05387 1.24507 0.94925 1.27029 1.07446 0.95267 0.93576 1.70990 1.18442 1.47624 1.19731 0.84156 0.73729 0.78337 0.76064 1.22291 1.16531 1.22317 1.21757 0.94455 0.96263 0.85051 0.91538 1.22003 0.97453 0.98418 0.82336 0.89244 0.88817 0.93201 0.81013 0.80396 0.79466 0.90053 0.88474 0.87219 0.89573 0.86165 0.93796 0.92177 0.93869 0.93455 0.91799 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 9.68 71.24 0.69 -2.03 16 2 C -0.11 -3.18 5.93 -19.52 -0.12 -3.30 16 3 C -0.08 -1.75 9.87 22.45 0.22 -1.52 16 4 C -0.15 -2.92 10.11 22.44 0.23 -2.70 16 5 C 0.08 1.99 11.18 84.83 0.95 2.94 16 6 N -0.49 -15.81 10.25 -184.91 -1.90 -17.71 16 7 C 0.06 2.11 4.49 41.90 0.19 2.29 16 8 C 0.58 20.63 5.75 86.88 0.50 21.13 16 9 O -0.56 -21.83 16.53 -3.78 -0.06 -21.90 16 10 N -0.59 -19.56 2.96 -821.97 -2.43 -21.99 16 11 C 0.12 3.20 6.27 86.34 0.54 3.74 16 12 C -0.11 -2.82 5.82 30.49 0.18 -2.64 16 13 C 0.09 2.77 2.73 30.50 0.08 2.85 16 14 H 0.05 1.64 8.11 -2.39 -0.02 1.62 16 15 O -0.38 -12.30 9.59 -148.98 -1.43 -13.72 16 16 C 0.05 1.69 6.96 71.92 0.50 2.20 16 17 C 0.10 3.97 4.04 86.19 0.35 4.32 16 18 N -0.60 -26.96 2.39 -673.16 -1.61 -28.57 16 19 C -0.35 -18.55 9.78 84.03 0.82 -17.73 16 20 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 21 C -0.03 -1.85 4.85 84.86 0.41 -1.44 16 22 N -0.93 -55.66 13.70 21.65 0.30 -55.36 16 23 Si 1.05 48.97 27.14 68.60 1.86 50.83 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 25 H -0.24 -10.04 4.68 99.48 0.47 -9.58 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 C 0.13 5.05 3.03 44.95 0.14 5.18 16 28 H 0.07 2.69 7.99 -2.39 -0.02 2.67 16 29 C 0.12 4.49 5.52 86.43 0.48 4.97 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.92 8.12 -2.38 -0.02 1.90 16 32 H 0.05 1.40 6.98 -2.39 -0.02 1.38 16 33 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 35 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.08 2.21 7.95 -2.39 -0.02 2.19 16 37 H 0.10 2.62 7.00 -2.39 -0.02 2.60 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 42 H 0.06 2.58 6.22 -2.38 -0.01 2.57 16 43 H 0.04 1.71 5.47 -2.38 -0.01 1.70 16 44 H 0.26 15.45 8.73 -92.71 -0.81 14.64 16 45 H 0.06 2.45 6.58 -2.38 -0.02 2.44 16 46 H 0.06 2.37 6.33 -2.39 -0.02 2.35 16 Total: -1.00 -70.94 359.85 1.59 -69.35 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.71 Total: 20.82 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 6.15 Total: 18.26 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -5.64 Total: -123.64 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.49 Total: -35.62 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.86 Total: 50.83 kcal Total: -70.94 1.59 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074211708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.928 kcal (2) G-P(sol) polarization free energy of solvation -70.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds