Wall clock time and date at job start Tue Mar 31 2020 16:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35649 * 117.00068 * 2 1 4 4 C 1.39338 * 120.54002 * 359.97248 * 3 2 1 5 5 C 1.38303 * 118.43708 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.27722 * 179.97438 * 5 4 3 7 7 C 1.38766 * 119.44693 * 0.02562 * 5 4 3 8 8 N 1.31378 * 121.06869 * 359.73721 * 7 5 4 9 9 C 1.32857 * 121.69130 * 0.53125 * 8 7 5 10 10 C 1.47834 * 119.78404 * 179.75382 * 9 8 7 11 11 O 1.21549 * 120.00081 * 179.72576 * 10 9 8 12 12 N 1.34778 * 119.99606 * 359.72347 * 10 9 8 13 13 C 1.47347 * 125.53000 * 0.02562 * 12 10 9 14 14 C 1.54937 * 104.89080 * 156.52546 * 13 12 10 15 15 C 1.54798 * 101.50291 * 37.23383 * 14 13 12 16 16 H 1.09005 * 112.63771 * 85.34224 * 15 14 13 17 17 C 1.53265 * 109.75291 * 212.29206 * 15 14 13 18 18 N 1.46579 * 108.15535 * 95.76449 * 17 15 14 19 19 C 1.36942 * 125.30286 * 177.92701 * 18 17 15 20 20 H 1.07998 * 119.99932 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99903 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99735 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47233 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46809 * 120.00380 * 23 21 19 26 26 H 1.48504 * 109.47082 * 239.99996 * 23 21 19 27 27 C 1.46606 * 109.39071 * 357.88728 * 18 17 15 28 28 C 1.47212 * 125.52737 * 180.02562 * 12 10 9 29 29 H 1.08998 * 112.29154 * 56.26261 * 28 12 10 30 30 H 1.09000 * 109.47312 * 300.00646 * 1 2 3 31 31 H 1.09006 * 109.46882 * 60.00024 * 1 2 3 32 32 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.78438 * 0.04432 * 4 3 2 34 34 H 1.08999 * 109.47199 * 89.99874 * 6 5 4 35 35 H 1.09005 * 109.47575 * 210.00487 * 6 5 4 36 36 H 1.09006 * 109.47231 * 329.99886 * 6 5 4 37 37 H 1.08002 * 119.46514 * 179.97438 * 7 5 4 38 38 H 1.09000 * 110.35388 * 37.67613 * 13 12 10 39 39 H 1.08993 * 110.35952 * 275.37744 * 13 12 10 40 40 H 1.08999 * 111.02406 * 155.29677 * 14 13 12 41 41 H 1.09005 * 111.01821 * 279.18315 * 14 13 12 42 42 H 1.08996 * 109.73961 * 215.45201 * 17 15 14 43 43 H 1.09000 * 109.73558 * 336.09992 * 17 15 14 44 44 H 0.97001 * 119.99569 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.91319 * 258.45211 * 27 18 17 46 46 H 1.09004 * 109.91142 * 137.17402 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 -0.0006 5 6 1.9697 3.5927 -0.0011 6 6 1.2021 4.8896 -0.0023 7 6 3.3573 3.6011 -0.0016 8 7 4.0420 2.4798 0.0036 9 6 3.4410 1.2950 -0.0009 10 6 4.2531 0.0597 -0.0003 11 8 3.7074 -1.0264 0.0006 12 7 5.5986 0.1378 -0.0007 13 6 6.3839 1.3846 -0.0013 14 6 7.7584 0.9897 0.5949 15 6 7.9602 -0.4233 -0.0042 16 1 8.4035 -0.3976 -0.9997 17 6 8.7455 -1.2963 0.9808 18 7 7.7848 -2.0788 1.7639 19 6 8.1100 -3.0048 2.7189 20 1 9.1467 -3.2063 2.9448 21 6 7.1072 -3.6846 3.3966 22 7 5.8438 -3.4394 3.1208 23 14 7.5509 -4.9482 4.6988 24 1 9.0283 -5.0378 4.8186 25 1 6.9729 -4.5381 6.0037 26 1 7.0041 -6.2730 4.3097 27 6 6.4215 -1.7150 1.3660 28 6 6.5221 -1.0086 -0.0007 29 1 6.3450 -1.6822 -0.8391 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2175 2.3528 -0.0003 34 1 1.0166 5.2030 1.0250 35 1 1.7831 5.6553 -0.5165 36 1 0.2513 4.7487 -0.5165 37 1 3.8829 4.5445 -0.0024 38 1 5.9018 2.1366 0.6233 39 1 6.5047 1.7562 -1.0187 40 1 8.5402 1.6716 0.2604 41 1 7.7157 0.9503 1.6834 42 1 9.4064 -1.9672 0.4322 43 1 9.3332 -0.6634 1.6458 44 1 5.1430 -3.9142 3.5946 45 1 5.9877 -1.0388 2.1026 46 1 5.8091 -2.6123 1.2759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075892134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:06 Heat of formation + Delta-G solvation = 16.824871 kcal Electronic energy + Delta-G solvation = -29368.578185 eV Core-core repulsion = 25453.310083 eV Total energy + Delta-G solvation = -3915.268101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02838 -39.59607 -38.31010 -37.44353 -34.79530 -33.87921 -32.04624 -31.06451 -30.46812 -28.81486 -28.12116 -27.35910 -26.35799 -24.39000 -23.74818 -22.75433 -21.99058 -20.57172 -19.81344 -18.81123 -17.70352 -17.48422 -17.02682 -16.64383 -16.06483 -15.51162 -15.25189 -14.65363 -14.52187 -14.27474 -14.19763 -13.95203 -13.73163 -13.39802 -13.19211 -13.01586 -12.88438 -12.56652 -12.39396 -12.29167 -11.97882 -11.78595 -11.57328 -11.53278 -11.36398 -11.02964 -10.94496 -10.72495 -10.40147 -10.11306 -9.89132 -9.71438 -9.66533 -9.58985 -9.56491 -9.18494 -8.49983 -8.48603 -7.89890 -6.70054 -5.51779 -2.93983 0.62200 1.11093 3.04369 3.07286 3.40268 3.47833 3.52206 3.55642 3.97025 4.20179 4.35984 4.53420 4.59436 4.68929 4.73807 4.89955 4.99785 5.06061 5.10999 5.20365 5.22983 5.31771 5.40724 5.43307 5.58411 5.62789 5.69167 5.80800 5.86128 5.88962 5.98232 6.09482 6.13623 6.23601 6.34424 6.39512 6.57456 6.69276 6.78286 6.89042 7.04085 7.13460 7.65228 7.73627 7.76614 8.04701 8.16748 8.49794 8.76756 9.35329 9.96480 10.59464 11.52206 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003686 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.115255 B = 7595.366218 C = 8795.160944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.268 6.268 3 C 0.142 3.858 4 C -0.181 4.181 5 C -0.081 4.081 6 C -0.113 4.113 7 C 0.051 3.949 8 N -0.411 5.411 9 C 0.051 3.949 10 C 0.578 3.422 11 O -0.505 6.505 12 N -0.591 5.591 13 C 0.109 3.891 14 C -0.127 4.127 15 C -0.110 4.110 16 H 0.086 0.914 17 C 0.146 3.854 18 N -0.602 5.602 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.912 5.912 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.167 3.833 28 C 0.115 3.885 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.251 0.749 45 H 0.019 0.981 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 18.697 -9.478 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.177 6.177 3 C 0.091 3.909 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.170 4.170 7 C -0.110 4.110 8 N -0.122 5.122 9 C -0.088 4.088 10 C 0.364 3.636 11 O -0.378 6.378 12 N -0.324 5.324 13 C -0.014 4.014 14 C -0.165 4.165 15 C -0.129 4.129 16 H 0.104 0.896 17 C 0.020 3.980 18 N -0.329 5.329 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.560 5.560 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.041 3.959 28 C 0.011 3.989 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.161 0.839 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.170 17.695 -9.325 22.004 hybrid contribution -1.025 -0.339 0.742 1.310 sum -10.195 17.356 -8.583 21.882 Atomic orbital electron populations 1.23208 0.78756 1.04739 1.00881 1.86491 1.20711 1.24330 1.86134 1.20041 0.92272 0.85685 0.92925 1.21580 1.00770 0.91270 1.07060 1.20942 0.95290 0.95608 0.96443 1.20792 0.99788 0.93436 1.02979 1.22654 0.90568 0.96659 1.01084 1.67940 1.38700 0.97361 1.08173 1.20815 0.88587 0.92928 1.06444 1.17155 0.80871 0.87124 0.78476 1.90880 1.70585 1.27369 1.49003 1.48272 1.04135 1.08449 1.71581 1.22524 0.90866 0.87370 1.00687 1.22875 0.96229 0.95929 1.01472 1.22865 0.95549 0.95431 0.99073 0.89595 1.20973 0.92594 0.92510 0.91963 1.44188 1.00709 1.44708 1.43298 1.19068 0.92544 1.12863 1.11305 0.90370 1.24853 0.95331 1.00236 1.00088 1.69959 0.98102 1.44250 1.43672 0.86050 0.77343 0.81171 0.81228 1.20547 1.21870 1.21763 1.21650 0.87323 0.99021 0.87856 1.22976 0.86703 0.87596 1.01581 0.90059 0.92605 0.92733 0.87564 0.83858 0.90360 0.90658 0.91208 0.82081 0.88509 0.92326 0.90666 0.90269 0.95987 0.95749 0.93773 0.96266 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.19 16 2 O -0.27 -4.32 8.56 -40.60 -0.35 -4.67 16 3 C 0.14 2.15 6.71 -38.55 -0.26 1.89 16 4 C -0.18 -1.95 8.80 -39.15 -0.34 -2.30 16 5 C -0.08 -0.75 5.90 -104.40 -0.62 -1.37 16 6 C -0.11 -0.61 10.03 36.00 0.36 -0.25 16 7 C 0.05 0.54 10.85 -17.55 -0.19 0.35 16 8 N -0.41 -5.92 6.59 -9.71 -0.06 -5.99 16 9 C 0.05 0.89 6.73 -82.88 -0.56 0.33 16 10 C 0.58 12.22 7.65 -12.33 -0.09 12.12 16 11 O -0.50 -12.49 15.25 -16.63 -0.25 -12.74 16 12 N -0.59 -11.77 2.85 -162.77 -0.46 -12.23 16 13 C 0.11 1.72 5.90 -2.56 -0.02 1.71 16 14 C -0.13 -2.02 6.23 -24.76 -0.15 -2.17 16 15 C -0.11 -1.99 3.91 -88.33 -0.35 -2.34 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.15 3.15 6.65 -3.86 -0.03 3.12 16 18 N -0.60 -16.33 3.37 -172.20 -0.58 -16.91 16 19 C -0.23 -6.70 10.25 -15.06 -0.15 -6.85 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 22 N -0.91 -28.72 10.17 55.49 0.56 -28.15 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 C 0.17 4.51 4.79 -3.37 -0.02 4.49 16 28 C 0.11 2.49 3.88 -65.73 -0.26 2.24 16 29 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 31 H 0.05 0.42 7.70 -51.93 -0.40 0.02 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.14 1.11 6.46 -52.49 -0.34 0.77 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 36 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 37 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.10 1.50 5.91 -51.93 -0.31 1.20 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.44 7.88 -51.93 -0.41 1.03 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.52 7.74 -51.93 -0.40 0.11 16 44 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.02 0.58 7.94 -51.93 -0.41 0.17 16 46 H 0.10 2.99 6.22 -51.93 -0.32 2.66 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -37.12 366.18 -9.18 -46.30 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.76 Total: -0.99 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -1.77 Total: 11.81 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.54 Total: -63.29 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.60 Total: -17.42 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.12 -9.18 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075892134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.128 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds