Wall clock time and date at job start Tue Mar 31 2020 16:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35649 * 117.00068 * 2 1 4 4 C 1.39338 * 120.54002 * 359.97248 * 3 2 1 5 5 C 1.38303 * 118.43708 * 180.02562 * 4 3 2 6 6 C 1.50698 * 120.27722 * 179.97438 * 5 4 3 7 7 C 1.38766 * 119.44693 * 0.02562 * 5 4 3 8 8 N 1.31378 * 121.06869 * 359.73721 * 7 5 4 9 9 C 1.32857 * 121.69130 * 0.53125 * 8 7 5 10 10 C 1.47834 * 119.78404 * 179.75382 * 9 8 7 11 11 O 1.21549 * 120.00081 * 179.72576 * 10 9 8 12 12 N 1.34778 * 119.99606 * 359.72347 * 10 9 8 13 13 C 1.47347 * 125.53000 * 0.02562 * 12 10 9 14 14 C 1.54937 * 104.89080 * 156.52546 * 13 12 10 15 15 C 1.54798 * 101.50291 * 37.23383 * 14 13 12 16 16 H 1.09005 * 112.63771 * 85.34224 * 15 14 13 17 17 C 1.53265 * 109.75291 * 212.29206 * 15 14 13 18 18 N 1.46579 * 108.15535 * 95.76449 * 17 15 14 19 19 C 1.36942 * 125.30286 * 177.92701 * 18 17 15 20 20 H 1.07998 * 119.99932 * 359.97438 * 19 18 17 21 21 C 1.38815 * 119.99903 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99735 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47233 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46809 * 120.00380 * 23 21 19 26 26 H 1.48504 * 109.47082 * 239.99996 * 23 21 19 27 27 C 1.46606 * 109.39071 * 357.88728 * 18 17 15 28 28 C 1.47212 * 125.52737 * 180.02562 * 12 10 9 29 29 H 1.08998 * 112.29154 * 56.26261 * 28 12 10 30 30 H 1.09000 * 109.47312 * 300.00646 * 1 2 3 31 31 H 1.09006 * 109.46882 * 60.00024 * 1 2 3 32 32 H 1.08997 * 109.47388 * 180.02562 * 1 2 3 33 33 H 1.07996 * 120.78438 * 0.04432 * 4 3 2 34 34 H 1.08999 * 109.47199 * 89.99874 * 6 5 4 35 35 H 1.09005 * 109.47575 * 210.00487 * 6 5 4 36 36 H 1.09006 * 109.47231 * 329.99886 * 6 5 4 37 37 H 1.08002 * 119.46514 * 179.97438 * 7 5 4 38 38 H 1.09000 * 110.35388 * 37.67613 * 13 12 10 39 39 H 1.08993 * 110.35952 * 275.37744 * 13 12 10 40 40 H 1.08999 * 111.02406 * 155.29677 * 14 13 12 41 41 H 1.09005 * 111.01821 * 279.18315 * 14 13 12 42 42 H 1.08996 * 109.73961 * 215.45201 * 17 15 14 43 43 H 1.09000 * 109.73558 * 336.09992 * 17 15 14 44 44 H 0.97001 * 119.99569 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.91319 * 258.45211 * 27 18 17 46 46 H 1.09004 * 109.91142 * 137.17402 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 -0.0006 5 6 1.9697 3.5927 -0.0011 6 6 1.2021 4.8896 -0.0023 7 6 3.3573 3.6011 -0.0016 8 7 4.0420 2.4798 0.0036 9 6 3.4410 1.2950 -0.0009 10 6 4.2531 0.0597 -0.0003 11 8 3.7074 -1.0264 0.0006 12 7 5.5986 0.1378 -0.0007 13 6 6.3839 1.3846 -0.0013 14 6 7.7584 0.9897 0.5949 15 6 7.9602 -0.4233 -0.0042 16 1 8.4035 -0.3976 -0.9997 17 6 8.7455 -1.2963 0.9808 18 7 7.7848 -2.0788 1.7639 19 6 8.1100 -3.0048 2.7189 20 1 9.1467 -3.2063 2.9448 21 6 7.1072 -3.6846 3.3966 22 7 5.8438 -3.4394 3.1208 23 14 7.5509 -4.9482 4.6988 24 1 9.0283 -5.0378 4.8186 25 1 6.9729 -4.5381 6.0037 26 1 7.0041 -6.2730 4.3097 27 6 6.4215 -1.7150 1.3660 28 6 6.5221 -1.0086 -0.0007 29 1 6.3450 -1.6822 -0.8391 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 0.2175 2.3528 -0.0003 34 1 1.0166 5.2030 1.0250 35 1 1.7831 5.6553 -0.5165 36 1 0.2513 4.7487 -0.5165 37 1 3.8829 4.5445 -0.0024 38 1 5.9018 2.1366 0.6233 39 1 6.5047 1.7562 -1.0187 40 1 8.5402 1.6716 0.2604 41 1 7.7157 0.9503 1.6834 42 1 9.4064 -1.9672 0.4322 43 1 9.3332 -0.6634 1.6458 44 1 5.1430 -3.9142 3.5946 45 1 5.9877 -1.0388 2.1026 46 1 5.8091 -2.6123 1.2759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075892134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:05 Heat of formation + Delta-G solvation = -8.510153 kcal Electronic energy + Delta-G solvation = -29369.676794 eV Core-core repulsion = 25453.310083 eV Total energy + Delta-G solvation = -3916.366710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12603 -41.08401 -39.30886 -39.07851 -36.62251 -34.84043 -33.93397 -32.20757 -32.01819 -30.50055 -29.09749 -28.55877 -27.76985 -26.43150 -24.83126 -23.85214 -23.12931 -22.34883 -21.36256 -20.41398 -18.98165 -18.75227 -18.53758 -18.07668 -17.20844 -16.95064 -16.84144 -16.30977 -15.89614 -15.67520 -15.14160 -15.06302 -14.96603 -14.87942 -14.55130 -14.32199 -14.09001 -13.74186 -13.56911 -13.47245 -13.43759 -13.21173 -13.01414 -12.90748 -12.80900 -12.59318 -12.41602 -12.37621 -12.10821 -11.88113 -11.74111 -11.53088 -11.39421 -11.10055 -10.77744 -10.51350 -10.37815 -9.68371 -9.34691 -8.92532 -7.79019 -5.25514 -0.38572 0.21469 1.41321 1.44653 1.55347 1.77251 1.96282 2.20015 2.47697 2.79019 3.12190 3.31304 3.51305 3.53814 3.67493 3.70409 3.82582 3.91856 4.04132 4.07225 4.19035 4.23364 4.30009 4.37161 4.42462 4.51784 4.59229 4.61230 4.70016 4.82791 4.85556 4.88257 4.92751 4.99147 5.11890 5.17501 5.20519 5.23452 5.34451 5.47421 5.49755 5.51497 5.62174 5.79974 6.21610 6.23344 6.58915 6.75858 7.05716 7.24216 7.77164 8.38897 9.23501 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.003686 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.115255 B = 7595.366218 C = 8795.160944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.315 6.315 3 C 0.126 3.874 4 C -0.176 4.176 5 C -0.059 4.059 6 C -0.111 4.111 7 C 0.053 3.947 8 N -0.422 5.422 9 C 0.002 3.998 10 C 0.564 3.436 11 O -0.565 6.565 12 N -0.596 5.596 13 C 0.111 3.889 14 C -0.117 4.117 15 C -0.093 4.093 16 H 0.130 0.870 17 C 0.138 3.862 18 N -0.625 5.625 19 C -0.241 4.241 20 H 0.092 0.908 21 C -0.075 4.075 22 N -0.952 5.952 23 Si 0.985 3.015 24 H -0.257 1.257 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.191 3.809 28 C 0.116 3.884 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.203 0.797 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.048 0.952 42 H 0.034 0.966 43 H 0.038 0.962 44 H 0.242 0.758 45 H -0.028 1.028 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 22.897 -10.451 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.225 6.225 3 C 0.075 3.925 4 C -0.202 4.202 5 C -0.061 4.061 6 C -0.168 4.168 7 C -0.110 4.110 8 N -0.133 5.133 9 C -0.134 4.134 10 C 0.353 3.647 11 O -0.444 6.444 12 N -0.328 5.328 13 C -0.010 4.010 14 C -0.154 4.154 15 C -0.112 4.112 16 H 0.148 0.852 17 C 0.013 3.987 18 N -0.351 5.351 19 C -0.370 4.370 20 H 0.109 0.891 21 C -0.267 4.267 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.180 1.180 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.064 3.936 28 C 0.011 3.989 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.194 0.806 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.219 0.781 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.144 0.856 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.051 0.949 45 H -0.010 1.010 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.477 21.928 -10.320 25.675 hybrid contribution -1.310 -1.491 1.039 2.241 sum -9.787 20.437 -9.280 24.486 Atomic orbital electron populations 1.23501 0.76197 1.05643 1.03024 1.86429 1.23678 1.25955 1.86481 1.20291 0.92016 0.86779 0.93406 1.21968 1.02217 0.90093 1.05935 1.21498 0.95158 0.96875 0.92560 1.20942 1.00220 0.91256 1.04346 1.23443 0.91682 0.96683 0.99221 1.67784 1.39485 0.97301 1.08761 1.20247 0.89114 0.92304 1.11715 1.18002 0.81371 0.88209 0.77110 1.90815 1.71807 1.29975 1.51764 1.48423 1.04118 1.09175 1.71115 1.22747 0.90082 0.85680 1.02468 1.22887 0.97685 0.95303 0.99568 1.22925 0.91965 0.95736 1.00542 0.85238 1.21254 0.92212 0.92821 0.92362 1.44517 1.01859 1.45153 1.43603 1.19577 0.93112 1.12870 1.11416 0.89055 1.25857 0.95158 1.02835 1.02891 1.70317 0.99262 1.45581 1.44954 0.84906 0.78211 0.77831 0.77763 1.18033 1.22086 1.22031 1.21089 0.86692 0.95977 0.89826 1.22687 0.90105 0.88528 0.97537 0.91341 0.90781 0.90003 0.87547 0.80603 0.88913 0.88499 0.89616 0.78080 0.88033 0.89415 0.85618 0.93287 0.94778 0.94409 0.94889 1.00966 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.83 113.37 1.11 1.33 16 2 O -0.31 -10.97 8.56 -68.65 -0.59 -11.55 16 3 C 0.13 3.94 6.71 22.94 0.15 4.09 16 4 C -0.18 -3.43 8.80 22.55 0.20 -3.23 16 5 C -0.06 -0.88 5.90 -19.72 -0.12 -0.99 16 6 C -0.11 -0.59 10.03 71.24 0.71 0.12 16 7 C 0.05 0.95 10.85 84.89 0.92 1.87 16 8 N -0.42 -11.78 6.59 -184.62 -1.22 -13.00 16 9 C 0.00 0.06 6.73 41.93 0.28 0.34 16 10 C 0.56 25.94 7.65 86.78 0.66 26.60 16 11 O -0.57 -31.28 15.25 17.12 0.26 -31.02 16 12 N -0.60 -24.96 2.85 -787.16 -2.24 -27.21 16 13 C 0.11 3.41 5.90 86.88 0.51 3.92 16 14 C -0.12 -3.45 6.23 31.87 0.20 -3.25 16 15 C -0.09 -3.24 3.91 -9.31 -0.04 -3.27 16 16 H 0.13 3.50 8.14 -2.38 -0.02 3.48 16 17 C 0.14 5.89 6.65 86.45 0.58 6.47 16 18 N -0.62 -35.32 3.37 -698.72 -2.36 -37.68 16 19 C -0.24 -14.53 10.25 84.03 0.86 -13.66 16 20 H 0.09 5.13 7.83 -2.91 -0.02 5.10 16 21 C -0.08 -4.68 5.48 84.86 0.47 -4.21 16 22 N -0.95 -64.56 10.17 21.65 0.22 -64.34 16 23 Si 0.99 49.30 29.55 68.60 2.03 51.32 16 24 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 26 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 27 C 0.19 11.16 4.79 86.76 0.42 11.58 16 28 C 0.12 5.31 3.88 46.03 0.18 5.48 16 29 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.07 1.18 7.70 -2.39 -0.02 1.16 16 31 H 0.08 1.16 7.70 -2.38 -0.02 1.14 16 32 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.18 2.12 6.46 -2.91 -0.02 2.10 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.10 0.20 8.09 -2.38 -0.02 0.18 16 36 H 0.09 0.28 8.09 -2.38 -0.02 0.26 16 37 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.10 3.05 5.91 -2.39 -0.01 3.04 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.05 1.76 7.88 -2.38 -0.02 1.74 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.53 7.74 -2.39 -0.02 1.51 16 44 H 0.24 16.02 8.31 -92.71 -0.77 15.25 16 45 H -0.03 -1.83 7.94 -2.39 -0.02 -1.85 16 46 H 0.04 2.68 6.22 -2.39 -0.01 2.66 16 Total: -1.00 -94.11 366.18 4.20 -89.91 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.99 Total: 10.38 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 7.10 Total: 33.19 kcal Atomic # 7 Polarization: -136.63 SS G_CDS: -5.60 Total: -142.23 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.33 Total: -42.58 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.03 Total: 51.32 kcal Total: -94.11 4.20 -89.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075892134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.400 kcal (2) G-P(sol) polarization free energy of solvation -94.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds