Wall clock time and date at job start Tue Mar 31 2020 16:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35432 * 116.99649 * 2 1 4 4 N 1.32238 * 119.80055 * 0.29217 * 3 2 1 5 5 C 1.31882 * 121.79731 * 180.32969 * 4 3 2 6 6 C 1.50704 * 119.40441 * 179.67398 * 5 4 3 7 7 C 1.38353 * 121.18665 * 359.66112 * 5 4 3 8 8 C 1.38338 * 119.45927 * 0.02562 * 7 5 4 9 9 C 1.39984 * 118.34808 * 359.97438 * 8 7 5 10 10 C 1.47523 * 120.59523 * 180.02562 * 9 8 7 11 11 O 1.21587 * 120.00162 * 215.63509 * 10 9 8 12 12 N 1.34772 * 119.99977 * 35.64225 * 10 9 8 13 13 C 1.47363 * 125.53158 * 356.76337 * 12 10 9 14 14 C 1.54940 * 105.10288 * 156.51692 * 13 12 10 15 15 C 1.54792 * 101.50167 * 36.73163 * 14 13 12 16 16 H 1.08995 * 113.15869 * 85.61986 * 15 14 13 17 17 C 1.53271 * 109.74802 * 212.29626 * 15 14 13 18 18 N 1.46584 * 108.16112 * 95.76092 * 17 15 14 19 19 C 1.36928 * 125.30769 * 177.88391 * 18 17 15 20 20 H 1.08002 * 119.99908 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00301 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99733 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00256 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46907 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46856 * 119.99961 * 23 21 19 26 26 H 1.48489 * 109.47098 * 240.00263 * 23 21 19 27 27 C 1.46615 * 109.38732 * 357.89167 * 18 17 15 28 28 C 1.47222 * 125.53177 * 175.71861 * 12 10 9 29 29 H 1.09002 * 112.28264 * 56.24317 * 28 12 10 30 30 H 1.09006 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47363 * 299.99851 * 1 2 3 32 32 H 1.09004 * 109.47359 * 60.00000 * 1 2 3 33 33 H 1.09001 * 109.47462 * 269.98499 * 6 5 4 34 34 H 1.08998 * 109.46866 * 29.98841 * 6 5 4 35 35 H 1.09002 * 109.46865 * 149.98535 * 6 5 4 36 36 H 1.08006 * 120.26855 * 180.02562 * 7 5 4 37 37 H 1.07999 * 120.82384 * 180.02562 * 8 7 5 38 38 H 1.09002 * 110.68062 * 37.36964 * 13 12 10 39 39 H 1.09005 * 109.82637 * 275.21614 * 13 12 10 40 40 H 1.09005 * 111.01765 * 278.67363 * 14 13 12 41 41 H 1.09001 * 111.05425 * 154.80464 * 14 13 12 42 42 H 1.09003 * 109.73449 * 215.44832 * 17 15 14 43 43 H 1.08998 * 109.73350 * 336.07408 * 17 15 14 44 44 H 0.97000 * 120.00002 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.90893 * 258.45251 * 27 18 17 46 46 H 1.09000 * 109.91539 * 137.16818 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3196 2.3132 0.0059 5 6 1.8769 3.5085 -0.0004 6 6 0.9997 4.7339 -0.0006 7 6 3.2524 3.6576 -0.0064 8 6 4.0586 2.5335 -0.0064 9 6 3.4449 1.2754 0.0003 10 6 4.2570 0.0438 0.0012 11 8 3.8748 -0.9369 -0.6075 12 7 5.4225 0.0056 0.6768 13 6 6.0326 1.1376 1.3966 14 6 6.9600 0.4900 2.4555 15 6 7.5048 -0.7345 1.6810 16 1 8.3790 -0.5026 1.0726 17 6 7.7549 -1.8928 2.6532 18 7 6.5781 -2.7666 2.6351 19 6 6.4453 -3.9301 3.3447 20 1 7.2487 -4.2684 3.9823 21 6 5.2781 -4.6748 3.2447 22 7 4.2992 -4.2628 2.4673 23 14 5.0967 -6.2617 4.2133 24 1 6.3293 -6.5013 5.0061 25 1 3.9330 -6.1522 5.1293 26 1 4.8835 -7.3927 3.2750 27 6 5.5653 -2.2006 1.7387 28 6 6.2821 -1.1792 0.8337 29 1 6.5742 -1.6078 -0.1251 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7841 5.0262 -1.0284 34 1 0.0667 4.5129 0.5176 35 1 1.5140 5.5490 0.5086 36 1 3.6931 4.6437 -0.0110 37 1 5.1348 2.6243 -0.0106 38 1 5.2669 1.7426 1.8822 39 1 6.6147 1.7456 0.7039 40 1 6.3933 0.1774 3.3326 41 1 7.7674 1.1667 2.7352 42 1 8.6348 -2.4539 2.3386 43 1 7.9080 -1.5023 3.6592 44 1 3.4834 -4.7829 2.3977 45 1 4.7912 -1.7013 2.3214 46 1 5.1246 -2.9905 1.1305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076330697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:32 Heat of formation + Delta-G solvation = 12.177663 kcal Electronic energy + Delta-G solvation = -29459.728356 eV Core-core repulsion = 25544.258737 eV Total energy + Delta-G solvation = -3915.469619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00206 -39.75500 -38.02052 -37.57123 -34.96779 -33.29721 -32.07214 -31.83091 -30.61675 -28.85909 -28.37468 -27.12621 -26.35478 -24.52180 -23.49418 -23.06998 -22.05788 -20.64629 -19.85152 -18.86516 -18.09505 -17.24046 -16.84749 -16.64564 -16.09958 -15.45716 -15.34941 -14.77123 -14.53233 -14.30780 -14.20847 -13.96685 -13.64836 -13.52323 -13.32319 -12.83856 -12.64271 -12.55795 -12.44487 -12.32611 -12.09322 -11.87156 -11.66492 -11.51088 -11.18342 -11.06411 -11.00991 -10.77291 -10.44570 -10.17619 -10.00190 -9.98431 -9.87371 -9.71747 -9.65767 -9.31986 -8.54752 -8.48265 -8.11066 -6.76473 -5.56911 -2.99531 0.71658 1.16617 3.01206 3.14463 3.29313 3.44810 3.49226 3.52737 3.78402 4.00256 4.48515 4.54386 4.61521 4.81553 4.84902 5.00315 5.04032 5.17916 5.24986 5.29719 5.32243 5.35014 5.37831 5.46935 5.54370 5.62226 5.68332 5.69238 5.72491 5.78737 5.84189 5.89569 5.95822 6.05217 6.25624 6.28007 6.36618 6.56290 6.66160 6.71570 6.91980 7.26106 7.60001 7.69342 7.72079 7.94961 8.03859 8.43558 8.64619 9.29784 9.90843 10.53012 11.47156 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003876 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.655551 B = 7222.898323 C = 8620.090439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.273 6.273 3 C 0.375 3.625 4 N -0.545 5.545 5 C 0.183 3.817 6 C -0.106 4.106 7 C -0.222 4.222 8 C -0.014 4.014 9 C -0.200 4.200 10 C 0.578 3.422 11 O -0.506 6.506 12 N -0.604 5.604 13 C 0.098 3.902 14 C -0.122 4.122 15 C -0.110 4.110 16 H 0.088 0.912 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.232 4.232 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.912 5.912 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.166 3.834 28 C 0.116 3.884 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.252 0.748 45 H 0.019 0.981 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 20.952 -4.974 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.177 6.177 3 C 0.195 3.805 4 N -0.271 5.271 5 C 0.045 3.955 6 C -0.163 4.163 7 C -0.243 4.243 8 C -0.040 4.040 9 C -0.206 4.206 10 C 0.365 3.635 11 O -0.381 6.381 12 N -0.339 5.339 13 C -0.025 4.025 14 C -0.160 4.160 15 C -0.129 4.129 16 H 0.106 0.894 17 C 0.019 3.981 18 N -0.328 5.328 19 C -0.360 4.360 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.559 5.559 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.040 3.960 28 C 0.013 3.987 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.949 19.849 -5.320 20.760 hybrid contribution 0.485 -0.543 0.589 0.936 sum -2.464 19.306 -4.731 20.030 Atomic orbital electron populations 1.22932 0.77342 1.03458 1.01942 1.86522 1.22585 1.23006 1.85609 1.19761 0.88046 0.84888 0.87790 1.67251 1.40294 0.98175 1.21386 1.21114 0.92156 0.91932 0.90275 1.20786 0.99369 0.92813 1.03344 1.21676 0.93823 0.99715 1.09069 1.21847 1.01051 0.90249 0.90831 1.19974 0.91656 0.95300 1.13686 1.17319 0.79634 0.86866 0.79653 1.90855 1.69170 1.35527 1.42524 1.48380 1.21349 1.12338 1.51814 1.22498 0.96257 0.89723 0.94059 1.22804 0.98526 0.96738 0.97947 1.22874 0.97117 0.95933 0.96976 0.89384 1.20986 0.91661 0.89949 0.95529 1.44171 1.13173 1.23494 1.52007 1.19055 1.00458 0.96685 1.19830 0.90342 1.24858 0.96393 0.99181 0.99964 1.69945 1.06272 1.38788 1.40886 0.86048 0.77423 0.83242 0.79056 1.20532 1.21820 1.21707 1.21656 0.89525 0.94013 0.90818 1.22949 0.89645 0.86782 0.99316 0.89848 0.88232 0.92348 0.92402 0.90004 0.90300 0.90249 0.84152 0.83329 0.90968 0.91746 0.89897 0.90287 0.95876 0.95733 0.93683 0.96289 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 101.05 1.05 1.57 16 2 O -0.27 -5.10 9.14 -35.46 -0.32 -5.42 16 3 C 0.38 6.37 7.48 -16.61 -0.12 6.25 16 4 N -0.55 -7.76 9.11 -9.21 -0.08 -7.85 16 5 C 0.18 2.01 6.78 -82.53 -0.56 1.46 16 6 C -0.11 -0.74 10.16 36.01 0.37 -0.37 16 7 C -0.22 -2.17 9.71 -39.50 -0.38 -2.56 16 8 C -0.01 -0.17 8.05 -38.89 -0.31 -0.48 16 9 C -0.20 -3.30 5.54 -104.69 -0.58 -3.88 16 10 C 0.58 11.59 7.22 -12.48 -0.09 11.50 16 11 O -0.51 -12.38 16.19 -12.18 -0.20 -12.58 16 12 N -0.60 -10.97 2.88 -162.87 -0.47 -11.44 16 13 C 0.10 1.29 5.13 -2.55 -0.01 1.28 16 14 C -0.12 -1.71 6.24 -24.76 -0.15 -1.86 16 15 C -0.11 -1.83 3.91 -88.33 -0.35 -2.18 16 16 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 17 C 0.15 2.98 6.65 -3.86 -0.03 2.96 16 18 N -0.60 -15.84 3.37 -172.21 -0.58 -16.42 16 19 C -0.23 -6.64 10.25 -15.06 -0.15 -6.80 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 22 N -0.91 -28.30 10.17 55.49 0.56 -27.73 16 23 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 C 0.17 4.33 4.91 -3.38 -0.02 4.31 16 28 C 0.12 2.38 3.83 -65.74 -0.25 2.13 16 29 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.15 1.39 5.50 -52.49 -0.29 1.10 16 38 H 0.07 0.88 6.67 -51.93 -0.35 0.54 16 39 H 0.06 0.65 7.18 -51.93 -0.37 0.28 16 40 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 44 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.02 0.56 7.96 -51.93 -0.41 0.14 16 46 H 0.10 2.96 6.22 -51.93 -0.32 2.63 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -36.86 368.08 -9.01 -45.87 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.74 Total: -0.77 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -1.69 Total: 13.02 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.57 Total: -63.44 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.52 Total: -18.00 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.86 -9.01 -45.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076330697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.045 kcal (2) G-P(sol) polarization free energy of solvation -36.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds